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Aliases for ZNF561 Gene

Aliases for ZNF561 Gene

  • Zinc Finger Protein 561 2 3

External Ids for ZNF561 Gene

Summaries for ZNF561 Gene

GeneCards Summary for ZNF561 Gene

ZNF561 (Zinc Finger Protein 561) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF426.

UniProtKB/Swiss-Prot for ZNF561 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF561 Gene

Genomics for ZNF561 Gene

Genomic Location for ZNF561 Gene

Start:
9,604,680 bp from pter
End:
9,621,399 bp from pter
Size:
16,720 bases
Orientation:
Minus strand

Genomic View for ZNF561 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF561 Gene

Regulatory Elements for ZNF561 Gene

Proteins for ZNF561 Gene

  • Protein details for ZNF561 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N587-ZN561_HUMAN
    Recommended name:
    Zinc finger protein 561
    Protein Accession:
    Q8N587
    Secondary Accessions:
    • B4E2Q8
    • Q6PJS0

    Protein attributes for ZNF561 Gene

    Size:
    486 amino acids
    Molecular mass:
    55197 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH12144.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH32668.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF561 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF561 Gene

Proteomics data for ZNF561 Gene at MOPED

Post-translational modifications for ZNF561 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF561 Gene

No data available for DME Specific Peptides for ZNF561 Gene

Domains for ZNF561 Gene

Gene Families for ZNF561 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

UniProtKB/Swiss-Prot:

ZN561_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q8N587
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q8N587
Similarity:
  • Contains 12 C2H2-type zinc fingers.:
    • Q8N587
genes like me logo Genes that share domains with ZNF561: view

Function for ZNF561 Gene

Molecular function for ZNF561 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF561 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF561: view

miRNA for ZNF561 Gene

miRTarBase miRNAs that target ZNF561

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF561 Gene

Localization for ZNF561 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF561 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF561 Gene COMPARTMENTS Subcellular localization image for ZNF561 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF561 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF561: view

Pathways for ZNF561 Gene

SuperPathways for ZNF561 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF561: view

Pathways by source for ZNF561 Gene

2 Reactome pathways for ZNF561 Gene

Interacting Proteins for ZNF561 Gene

Gene Ontology (GO) - Biological Process for ZNF561 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF561: view

Transcripts for ZNF561 Gene

Unigene Clusters for ZNF561 Gene

Zinc finger protein 561:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF561 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d · 8e ^ 9
SP1: - - - - - -
SP2: - - - - - - - -
SP3: - - -
SP4: - - - -
SP5: - - - -
SP6: - - - - - - - - -
SP7: - - -
SP8: - - - - - - - -
SP9: - - -
SP10: - - - - - - -
SP11:
SP12:

Relevant External Links for ZNF561 Gene

GeneLoc Exon Structure for
ZNF561
ECgene alternative splicing isoforms for
ZNF561

Expression for ZNF561 Gene

mRNA expression in normal human tissues for ZNF561 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF561 Gene

SOURCE GeneReport for Unigene cluster for ZNF561 Gene Hs.720081

genes like me logo Genes that share expressions with ZNF561: view

Orthologs for ZNF561 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF561 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF561 36
  • 99.04 (n)
  • 98.15 (a)
ZNF561 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 29 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 40 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp266 37
  • 49 (a)
OneToMany
Species with no ortholog for ZNF561:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF561 Gene

ENSEMBL:
Gene Tree for ZNF561 (if available)
TreeFam:
Gene Tree for ZNF561 (if available)

Paralogs for ZNF561 Gene

Paralogs for ZNF561 Gene

Selected SIMAP similar genes for ZNF561 Gene using alignment to 10 proteins:

Pseudogenes.org Pseudogenes for ZNF561 Gene

genes like me logo Genes that share paralogs with ZNF561: view

Variants for ZNF561 Gene

Sequence variations from dbSNP and Humsavar for ZNF561 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs7250247 -- 9,613,786(+) tgttg(A/G)gatta intron-variant
rs8100797 -- 9,607,911(+) tgttg(C/T)ccagg utr-variant-3-prime
rs8100913 -- 9,608,016(+) gcagg(C/T)acccg utr-variant-3-prime
rs8101008 -- 9,608,081(+) ttaac(C/T)aggac utr-variant-3-prime
rs8105951 -- 9,607,996(+) cctcc(C/T)gagta utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF561 Gene

Variant ID Type Subtype PubMed ID
esv2718156 CNV Deletion 23290073
nsv138179 CNV Loss 16902084
esv994852 CNV Insertion 20482838

Relevant External Links for ZNF561 Gene

HapMap Linkage Disequilibrium report
ZNF561

Disorders for ZNF561 Gene

No disorders were found for ZNF561 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF561 Gene

Publications for ZNF561 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3

Products for ZNF561 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF561
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF561
    • Block miRNA regulation of ZNF561 using miScript Target Protectors

    Sources for ZNF561 Gene

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