Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF560 Gene

Aliases for ZNF560 Gene

  • Zinc Finger Protein 560 2 3 5

External Ids for ZNF560 Gene

Previous GeneCards Identifiers for ZNF560 Gene

  • GC19M009268
  • GC19M009438
  • GC19M009577
  • GC19M009158
  • GC19M009466

Summaries for ZNF560 Gene

GeneCards Summary for ZNF560 Gene

ZNF560 (Zinc Finger Protein 560) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF562.

UniProtKB/Swiss-Prot for ZNF560 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF560 Gene

Genomics for ZNF560 Gene

Regulatory Elements for ZNF560 Gene

Enhancers for ZNF560 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZNF560 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNF560 Gene

9,445,826 bp from pter
9,506,689 bp from pter
60,864 bases
Minus strand

Genomic View for ZNF560 Gene

Genes around ZNF560 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF560 Gene

Proteins for ZNF560 Gene

  • Protein details for ZNF560 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 560
    Protein Accession:
    Secondary Accessions:
    • Q495S9
    • Q495T1

    Protein attributes for ZNF560 Gene

    790 amino acids
    Molecular mass:
    91121 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF560 Gene

Proteomics data for ZNF560 Gene at MOPED

Post-translational modifications for ZNF560 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF560 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF560 Gene

Domains & Families for ZNF560 Gene

Gene Families for ZNF560 Gene

Protein Domains for ZNF560 Gene

Suggested Antigen Peptide Sequences for ZNF560 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 2 KRAB domains.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 15 C2H2-type zinc fingers.
  • Contains 2 KRAB domains.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 15 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF560: view

Function for ZNF560 Gene

Molecular function for ZNF560 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.
genes like me logo Genes that share phenotypes with ZNF560: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF560 Gene

Localization for ZNF560 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF560 Gene

Subcellular locations from

Jensen Localization Image for ZNF560 Gene COMPARTMENTS Subcellular localization image for ZNF560 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for ZNF560 Gene

Pathways & Interactions for ZNF560 Gene

SuperPathways for ZNF560 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF560: view

Pathways by source for ZNF560 Gene

2 Reactome pathways for ZNF560 Gene

Interacting Proteins for ZNF560 Gene

Gene Ontology (GO) - Biological Process for ZNF560 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF560: view

No data available for SIGNOR curated interactions for ZNF560 Gene

Drugs & Compounds for ZNF560 Gene

No Compound Related Data Available

Transcripts for ZNF560 Gene

mRNA/cDNA for ZNF560 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF560 Gene

Zinc finger protein 560:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF560 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b

Relevant External Links for ZNF560 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF560 Gene

mRNA expression in normal human tissues for ZNF560 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ZNF560 Gene

This gene is overexpressed in Testis (x40.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF560 Gene

SOURCE GeneReport for Unigene cluster for ZNF560 Gene Hs.631613

genes like me logo Genes that share expression patterns with ZNF560: view

Protein tissue co-expression partners for ZNF560 Gene

- Elite partner

Primer Products

No data available for Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF560 Gene

Orthologs for ZNF560 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF560 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Zfp560 35
  • 67.3 (n)
  • 49.93 (a)
Zfp560 16
Zfp560 36
  • 42 (a)
(Pan troglodytes)
Mammalia ZNF560 35
  • 98.44 (n)
  • 97.09 (a)
ZNF560 36
  • 97 (a)
(Rattus norvegicus)
Mammalia Zfp560 35
  • 67.02 (n)
  • 49.17 (a)
(Bos Taurus)
Mammalia -- 36
  • 36 (a)
Species with no ortholog for ZNF560:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF560 Gene

Gene Tree for ZNF560 (if available)
Gene Tree for ZNF560 (if available)

Paralogs for ZNF560 Gene

Paralogs for ZNF560 Gene

(307) SIMAP similar genes for ZNF560 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF560: view

Variants for ZNF560 Gene

Sequence variations from dbSNP and Humsavar for ZNF560 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
VAR_035588 A colorectal cancer sample
rs10416098 - 9,467,058(+) CCTTA(C/T)ATTCA nc-transcript-variant, reference, missense
rs7256452 -- 9,479,756(+) taagt(A/T)ttaca intron-variant
rs7257034 -- 9,469,920(+) AGAAA(A/C/T)AAGCA intron-variant
rs7257293 -- 9,465,980(+) cagag(C/T)gggac intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ZNF560 Gene

Variant ID Type Subtype PubMed ID
nsv911020 CNV Gain 21882294
nsv911024 CNV Loss 21882294
esv995010 CNV Deletion 20482838

Variation tolerance for ZNF560 Gene

Residual Variation Intolerance Score: 19.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.29; 40.98% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ZNF560 Gene

Disorders for ZNF560 Gene

Relevant External Links for ZNF560

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ZNF560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF560 Gene

Publications for ZNF560 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZNF560 Gene

Sources for ZNF560 Gene