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Aliases for ZNF560 Gene

Aliases for ZNF560 Gene

  • Zinc Finger Protein 560 2 3

External Ids for ZNF560 Gene

Summaries for ZNF560 Gene

GeneCards Summary for ZNF560 Gene

ZNF560 (Zinc Finger Protein 560) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF426.

UniProtKB/Swiss-Prot for ZNF560 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF560 Gene

Genomics for ZNF560 Gene

Genomic Location for ZNF560 Gene

Start:
9,466,355 bp from pter
End:
9,498,607 bp from pter
Size:
32,253 bases
Orientation:
Minus strand

Genomic View for ZNF560 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF560 Gene

Regulatory Elements for ZNF560 Gene

Proteins for ZNF560 Gene

  • Protein details for ZNF560 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96MR9-ZN560_HUMAN
    Recommended name:
    Zinc finger protein 560
    Protein Accession:
    Q96MR9
    Secondary Accessions:
    • Q495S9
    • Q495T1

    Protein attributes for ZNF560 Gene

    Size:
    790 amino acids
    Molecular mass:
    91121 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF560 Gene

Proteomics data for ZNF560 Gene at MOPED

Post-translational modifications for ZNF560 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF560 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF560 Gene

Domains for ZNF560 Gene

Gene Families for ZNF560 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF560 Gene

Suggested Antigen Peptide Sequences for ZNF560 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96MR9

UniProtKB/Swiss-Prot:

ZN560_HUMAN
Domain:
  • Contains 2 KRAB domains.:
    • Q96MR9
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q96MR9
Similarity:
  • Contains 15 C2H2-type zinc fingers.:
    • Q96MR9
genes like me logo Genes that share domains with ZNF560: view

Function for ZNF560 Gene

Molecular function for ZNF560 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF560 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF560: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF560 Gene

Localization for ZNF560 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF560 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF560 Gene COMPARTMENTS Subcellular localization image for ZNF560 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF560 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF560: view

Pathways for ZNF560 Gene

SuperPathways for ZNF560 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF560: view

Pathways by source for ZNF560 Gene

2 Reactome pathways for ZNF560 Gene

Interacting Proteins for ZNF560 Gene

Gene Ontology (GO) - Biological Process for ZNF560 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF560: view

Transcripts for ZNF560 Gene

mRNA/cDNA for ZNF560 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF560 Gene

Zinc finger protein 560:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF560 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b
SP1:
SP2:

Relevant External Links for ZNF560 Gene

GeneLoc Exon Structure for
ZNF560
ECgene alternative splicing isoforms for
ZNF560

Expression for ZNF560 Gene

mRNA expression in normal human tissues for ZNF560 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF560 Gene

This gene is overexpressed in Testis (40.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF560 Gene

SOURCE GeneReport for Unigene cluster for ZNF560 Gene Hs.631613

genes like me logo Genes that share expressions with ZNF560: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZNF560 Gene

Orthologs for ZNF560 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF560 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF560 35
  • 98.44 (n)
  • 97.09 (a)
ZNF560 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 36 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp560 35
  • 67.3 (n)
  • 49.93 (a)
Zfp560 36
  • 42 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Zfp560 35
  • 67.02 (n)
  • 49.17 (a)
Species with no ortholog for ZNF560:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF560 Gene

ENSEMBL:
Gene Tree for ZNF560 (if available)
TreeFam:
Gene Tree for ZNF560 (if available)

Paralogs for ZNF560 Gene

Paralogs for ZNF560 Gene

Selected SIMAP similar genes for ZNF560 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF560: view

Variants for ZNF560 Gene

Sequence variations from dbSNP and Humsavar for ZNF560 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs971366 -- 9,487,911(+) GAAGA(C/T)ATCTG intron-variant
rs971367 -- 9,487,952(+) ACCCC(A/G)CTATG intron-variant
rs971368 -- 9,487,973(+) GGTCT(A/G)TCCCC intron-variant
rs1117268 -- 9,493,468(+) caagc(A/C)attct intron-variant
rs1821273 -- 9,468,884(-) GGCAT(A/G)GTGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF560 Gene

Variant ID Type Subtype PubMed ID
nsv911020 CNV Gain 21882294
nsv911024 CNV Loss 21882294
esv995010 CNV Deletion 20482838

Relevant External Links for ZNF560 Gene

HapMap Linkage Disequilibrium report
ZNF560

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF560 Gene

Disorders for ZNF560 Gene

No disorders were found for ZNF560 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF560 Gene

Publications for ZNF560 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  5. The consensus coding sequences of human breast and colorectal cancers. (PMID: 16959974) Sjoeblom T. … Velculescu V.E. (Science 2006) 4

Products for ZNF560 Gene

Sources for ZNF560 Gene

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