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Aliases for ZNF558 Gene

Aliases for ZNF558 Gene

  • Zinc Finger Protein 558 2 3

External Ids for ZNF558 Gene

Previous GeneCards Identifiers for ZNF558 Gene

  • GC19M008782
  • GC19M008920
  • GC19M008497

Summaries for ZNF558 Gene

GeneCards Summary for ZNF558 Gene

ZNF558 (Zinc Finger Protein 558) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF333.

UniProtKB/Swiss-Prot for ZNF558 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF558 Gene

Genomics for ZNF558 Gene

Regulatory Elements for ZNF558 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF558 Gene

Start:
8,806,170 bp from pter
End:
8,832,328 bp from pter
Size:
26,159 bases
Orientation:
Minus strand

Genomic View for ZNF558 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF558 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF558 Gene

Proteins for ZNF558 Gene

  • Protein details for ZNF558 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NG5-ZN558_HUMAN
    Recommended name:
    Zinc finger protein 558
    Protein Accession:
    Q96NG5
    Secondary Accessions:
    • A8K5F0
    • B7Z798

    Protein attributes for ZNF558 Gene

    Size:
    402 amino acids
    Molecular mass:
    45755 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF558 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF558 Gene

Proteomics data for ZNF558 Gene at MOPED

Post-translational modifications for ZNF558 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF558 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for ZNF558 Gene

Domains for ZNF558 Gene

Gene Families for ZNF558 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF558 Gene

Suggested Antigen Peptide Sequences for ZNF558 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NG5

UniProtKB/Swiss-Prot:

ZN558_HUMAN :
  • Q96NG5
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 9 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF558: view

Function for ZNF558 Gene

Molecular function for ZNF558 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF558: view

Animal Model Products

CRISPR Products

miRNA for ZNF558 Gene

miRTarBase miRNAs that target ZNF558

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF558

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF558 Gene

Localization for ZNF558 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF558 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF558 Gene COMPARTMENTS Subcellular localization image for ZNF558 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF558: view

Pathways for ZNF558 Gene

SuperPathways for ZNF558 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF558: view

Pathways by source for ZNF558 Gene

2 Reactome pathways for ZNF558 Gene

Interacting Proteins for ZNF558 Gene

Gene Ontology (GO) - Biological Process for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZNF558: view

Transcripts for ZNF558 Gene

Unigene Clusters for ZNF558 Gene

Zinc finger protein 558:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF558

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF558 Gene

No ASD Table

Relevant External Links for ZNF558 Gene

GeneLoc Exon Structure for
ZNF558
ECgene alternative splicing isoforms for
ZNF558

Expression for ZNF558 Gene

mRNA expression in normal human tissues for ZNF558 Gene

Protein differential expression in normal tissues for ZNF558 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF558 Gene

SOURCE GeneReport for Unigene cluster for ZNF558 Gene Hs.659797

genes like me logo Genes that share expressions with ZNF558: view

Expression partners for ZNF558 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF558 Gene

Orthologs for ZNF558 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF558 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia ZNF558 35
  • 86.73 (n)
  • 86.82 (a)
ZNF558 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp558 35
  • 82.26 (n)
  • 80.35 (a)
Zfp558 16
Zfp558 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZNF558 35
  • 98.92 (n)
  • 99.25 (a)
ZNF558 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZNF558 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 38 (a)
ManyToMany
-- 36
  • 48 (a)
ManyToMany
-- 36
  • 37 (a)
ManyToMany
-- 36
  • 36 (a)
ManyToMany
-- 36
  • 47 (a)
ManyToMany
-- 36
  • 55 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 25 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ZNF557 36
  • 20 (a)
OneToMany
Species with no ortholog for ZNF558:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF558 Gene

ENSEMBL:
Gene Tree for ZNF558 (if available)
TreeFam:
Gene Tree for ZNF558 (if available)

Paralogs for ZNF558 Gene

Selected SIMAP similar genes for ZNF558 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZNF558 Gene

genes like me logo Genes that share paralogs with ZNF558: view

Variants for ZNF558 Gene

Sequence variations from dbSNP and Humsavar for ZNF558 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs11787 -- 8,809,953(-) ACTTA(A/C/G/T)ATGGA utr-variant-3-prime
rs173653 -- 8,815,523(+) catgt(A/G)taatc intron-variant
rs189836 -- 8,814,879(+) TAACA(A/G)GAGTT intron-variant
rs191779 -- 8,815,112(+) CCCAT(A/T)ACAAG intron-variant
rs250313 -- 8,814,724(+) gccca(C/T)gtaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF558 Gene

Variant ID Type Subtype PubMed ID
nsv469648 CNV Complex 16826518
nsv2402 CNV Loss 18451855
nsv428362 CNV Gain+Loss 18775914
nsv483078 CNV Complex 15286789
nsv171 CNV Loss 15895083
nsv911019 CNV Gain 21882294
nsv833738 CNV Gain 17160897
nsv833739 CNV Gain+Loss 17160897
dgv48n68 CNV Gain 17160897
dgv1056e1 CNV Complex 17122850

Relevant External Links for ZNF558 Gene

HapMap Linkage Disequilibrium report
ZNF558

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF558 Gene

Disorders for ZNF558 Gene

No disorders were found for ZNF558 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ZNF558 Gene

Publications for ZNF558 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. A protein interaction framework for human mRNA degradation. (PMID: 15231747) Lehner B. … Sanderson C.M. (Genome Res. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. (PMID: 21163940) Soler-LA^pez M. … Aloy P. (Genome Res. 2011) 3

Products for ZNF558 Gene

Sources for ZNF558 Gene

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