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Aliases for ZNF558 Gene

Aliases for ZNF558 Gene

  • Zinc Finger Protein 558 2 3 5

External Ids for ZNF558 Gene

Previous GeneCards Identifiers for ZNF558 Gene

  • GC19M008782
  • GC19M008920
  • GC19M008497

Summaries for ZNF558 Gene

GeneCards Summary for ZNF558 Gene

ZNF558 (Zinc Finger Protein 558) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF557.

UniProtKB/Swiss-Prot for ZNF558 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF558 Gene

Genomics for ZNF558 Gene

Regulatory Elements for ZNF558 Gene

Enhancers for ZNF558 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F008388 1 Ensembl ENCODE 51.3 +439.5 439484 10.3 HDGF PKNOX1 ARNT CREB3L1 MLX SIN3A ARID4B ZNF2 YY1 ZNF143 ZNF558 ZNF699 HNRNPM ELAVL1 XAB2 ZNF559 MARCH2 LINC01862 ENSG00000261866 LYPLA2P2
GH19F008353 0.9 Ensembl ENCODE 43.5 +476.7 476694 4.5 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B FEZF1 YY1 ZNF766 ZNF558 ZNF699 ELAVL1 ZNF559 ZNF414 HNRNPM XAB2 ENSG00000269300 RAB11B ENSG00000267510
GH19F008324 0.5 ENCODE 42.4 +507.4 507417 0.2 PKNOX1 ARNT CREB3L1 ARID4B ZNF2 YY1 ZNF207 ZNF548 PAF1 SP3 ZNF558 ZNF699 ZNF559 ELAVL1 HNRNPM XAB2 RPS28 LINC01862 ENSG00000261866 LYPLA2P2
GH19F008326 0.6 ENCODE 42.4 +507.6 507597 0.2 ATF1 ARNT ZNF2 ZNF48 YY1 GLIS2 ZNF207 ZNF548 PAF1 YY2 ZNF558 ZNF699 ZNF559 ELAVL1 HNRNPM XAB2 LINC01862 ENSG00000261866 LYPLA2P2 RPL21P129
GH19F008239 0.8 Ensembl ENCODE 37.7 +591.3 591280 3.3 HDGF PKNOX1 ARNT MLX SIN3A ARID4B ZNF2 YY1 CBX5 ZNF416 HNRNPM ELAVL1 ZNF558 XAB2 ZNF414 CERS4 ENSG00000271717 GC19P008268
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF558 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF558 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000343109 -73 2399 ATF1 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GLIS2 ELK1 KLF13

Genomic Location for ZNF558 Gene

Chromosome:
19
Start:
8,806,170 bp from pter
End:
8,832,328 bp from pter
Size:
26,159 bases
Orientation:
Minus strand

Genomic View for ZNF558 Gene

Genes around ZNF558 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF558 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF558 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF558 Gene

Proteins for ZNF558 Gene

  • Protein details for ZNF558 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NG5-ZN558_HUMAN
    Recommended name:
    Zinc finger protein 558
    Protein Accession:
    Q96NG5
    Secondary Accessions:
    • A8K5F0
    • B7Z798

    Protein attributes for ZNF558 Gene

    Size:
    402 amino acids
    Molecular mass:
    45755 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF558 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF558 Gene

Post-translational modifications for ZNF558 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF558 Gene

No data available for DME Specific Peptides for ZNF558 Gene

Domains & Families for ZNF558 Gene

Gene Families for ZNF558 Gene

Protein Domains for ZNF558 Gene

Suggested Antigen Peptide Sequences for ZNF558 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NG5

UniProtKB/Swiss-Prot:

ZN558_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 9 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 9 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF558: view

Function for ZNF558 Gene

Molecular function for ZNF558 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF558: view

Phenotypes for ZNF558 Gene

GenomeRNAi human phenotypes for ZNF558:
genes like me logo Genes that share phenotypes with ZNF558: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF558 Gene

Localization for ZNF558 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF558 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF558 Gene COMPARTMENTS Subcellular localization image for ZNF558 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF558: view

Pathways & Interactions for ZNF558 Gene

SuperPathways for ZNF558 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF558: view

Pathways by source for ZNF558 Gene

2 Reactome pathways for ZNF558 Gene

Interacting Proteins for ZNF558 Gene

Gene Ontology (GO) - Biological Process for ZNF558 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZNF558: view

No data available for SIGNOR curated interactions for ZNF558 Gene

Transcripts for ZNF558 Gene

Unigene Clusters for ZNF558 Gene

Zinc finger protein 558:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF558 Gene

No ASD Table

Relevant External Links for ZNF558 Gene

GeneLoc Exon Structure for
ZNF558
ECgene alternative splicing isoforms for
ZNF558

Expression for ZNF558 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF558 Gene

Protein differential expression in normal tissues from HIPED for ZNF558 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF558 Gene



Protein tissue co-expression partners for ZNF558 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF558 Gene:

ZNF558

SOURCE GeneReport for Unigene cluster for ZNF558 Gene:

Hs.659797
genes like me logo Genes that share expression patterns with ZNF558: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF558 Gene

Orthologs for ZNF558 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF558 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF558 34 35
  • 98.92 (n)
dog
(Canis familiaris)
Mammalia ZNF558 34 35
  • 86.73 (n)
cow
(Bos Taurus)
Mammalia ZNF558 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp558 34 16 35
  • 82.26 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 55 (a)
ManyToMany
-- 35
  • 48 (a)
ManyToMany
-- 35
  • 47 (a)
ManyToMany
-- 35
  • 38 (a)
ManyToMany
-- 35
  • 37 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 25 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ZNF557 35
  • 20 (a)
OneToMany
Species where no ortholog for ZNF558 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF558 Gene

ENSEMBL:
Gene Tree for ZNF558 (if available)
TreeFam:
Gene Tree for ZNF558 (if available)

Paralogs for ZNF558 Gene

Paralogs for ZNF558 Gene

(535) SIMAP similar genes for ZNF558 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZNF558 Gene

genes like me logo Genes that share paralogs with ZNF558: view

Variants for ZNF558 Gene

Sequence variations from dbSNP and Humsavar for ZNF558 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401317 -- 8,832,537(+) GCCCT(A/G)GGGGC upstream-variant-2KB
rs10401394 -- 8,830,318(+) aaact(C/T)tcagg intron-variant
rs10407086 -- 8,833,011(+) CGGAG(A/G)CCAGT upstream-variant-2KB
rs10407106 -- 8,811,167(+) ttgcg(G/T)ggatc utr-variant-3-prime
rs10410655 -- 8,829,784(+) GCATG(A/G)TAAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF558 Gene

Variant ID Type Subtype PubMed ID
dgv48n68 CNV gain 17160897
esv2758744 CNV gain+loss 17122850
esv2762024 CNV gain 21179565
nsv1059126 CNV gain 25217958
nsv171 CNV deletion 15895083
nsv2402 CNV deletion 18451855
nsv428362 CNV gain+loss 18775914
nsv469648 CNV gain+loss 16826518
nsv483078 CNV gain+loss 15286789
nsv833738 CNV gain 17160897
nsv833739 CNV gain+loss 17160897

Variation tolerance for ZNF558 Gene

Residual Variation Intolerance Score: 17.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.88; 35.10% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF558 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF558

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF558 Gene

Disorders for ZNF558 Gene

Relevant External Links for ZNF558

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF558

No disorders were found for ZNF558 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF558 Gene

Publications for ZNF558 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  5. Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. (PMID: 21163940) Soler-LA^pez M. … Aloy P. (Genome Res. 2011) 3 64

Products for ZNF558 Gene

Sources for ZNF558 Gene

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