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Aliases for ZNF555 Gene

Aliases for ZNF555 Gene

  • Zinc Finger Protein 555 2 3

External Ids for ZNF555 Gene

Summaries for ZNF555 Gene

GeneCards Summary for ZNF555 Gene

ZNF555 (Zinc Finger Protein 555) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF709.

UniProtKB/Swiss-Prot for ZNF555 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF555 Gene

Genomics for ZNF555 Gene

Genomic Location for ZNF555 Gene

Start:
2,841,435 bp from pter
End:
2,860,484 bp from pter
Size:
19,050 bases
Orientation:
Plus strand

Genomic View for ZNF555 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF555 Gene

Regulatory Elements for ZNF555 Gene

Transcription factor binding sites by QIAGEN in the ZNF555 gene promoter:

Proteins for ZNF555 Gene

  • Protein details for ZNF555 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEP9-ZN555_HUMAN
    Recommended name:
    Zinc finger protein 555
    Protein Accession:
    Q8NEP9
    Secondary Accessions:
    • A8KA89
    • K7EQM2
    • Q8NA46
    • Q96MP1

    Protein attributes for ZNF555 Gene

    Size:
    628 amino acids
    Molecular mass:
    73084 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF555 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF555 Gene

Proteomics data for ZNF555 Gene at MOPED

Post-translational modifications for ZNF555 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF555 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF555 Gene

Domains for ZNF555 Gene

Gene Families for ZNF555 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF555 Gene

Suggested Antigen Peptide Sequences for ZNF555 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NEP9

UniProtKB/Swiss-Prot:

ZN555_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q8NEP9
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q8NEP9
Similarity:
  • Contains 15 C2H2-type zinc fingers.:
    • Q8NEP9
genes like me logo Genes that share domains with ZNF555: view

Function for ZNF555 Gene

Molecular function for ZNF555 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF555 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF555: view

miRNA for ZNF555 Gene

miRTarBase miRNAs that target ZNF555

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF555 Gene

Localization for ZNF555 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF555 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF555 Gene COMPARTMENTS Subcellular localization image for ZNF555 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF555 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF555: view

Pathways for ZNF555 Gene

SuperPathways for ZNF555 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF555: view

Pathways by source for ZNF555 Gene

2 Reactome pathways for ZNF555 Gene

Gene Ontology (GO) - Biological Process for ZNF555 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF555: view

Transcripts for ZNF555 Gene

Unigene Clusters for ZNF555 Gene

Zinc finger protein 555:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF555 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b · 4c
SP1:
SP2: -
SP3:

Relevant External Links for ZNF555 Gene

GeneLoc Exon Structure for
ZNF555
ECgene alternative splicing isoforms for
ZNF555

Expression for ZNF555 Gene

mRNA expression in normal human tissues for ZNF555 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF555 Gene

SOURCE GeneReport for Unigene cluster for ZNF555 Gene Hs.47712

genes like me logo Genes that share expressions with ZNF555: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF555 Gene

Orthologs for ZNF555 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF555 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF555 35
  • 99.15 (n)
  • 98.72 (a)
ZNF555 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZNF555 35
  • 85.36 (n)
  • 84.94 (a)
ZNF555 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF555 35
  • 85.81 (n)
  • 86.08 (a)
ZNF555 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm14391 36
  • 50 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 47 (a)
ManyToMany
-- 36
  • 53 (a)
ManyToMany
-- 36
  • 49 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 47 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 45 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 36
  • 42 (a)
ManyToMany
CT573234.2 36
  • 42 (a)
ManyToMany
Species with no ortholog for ZNF555:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF555 Gene

ENSEMBL:
Gene Tree for ZNF555 (if available)
TreeFam:
Gene Tree for ZNF555 (if available)

Paralogs for ZNF555 Gene

Selected SIMAP similar genes for ZNF555 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZNF555 Gene

genes like me logo Genes that share paralogs with ZNF555: view

Variants for ZNF555 Gene

Sequence variations from dbSNP and Humsavar for ZNF555 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs758769 -- 2,845,585(+) catgt(A/G)taagc intron-variant
rs917653 -- 2,844,961(+) GGAAT(C/T)ATTAt intron-variant
rs1006715 -- 2,839,515(+) aaatt(A/T)aaaaa upstream-variant-2KB
rs1006716 -- 2,839,727(+) gatac(A/G)ttcct upstream-variant-2KB
rs1006717 -- 2,841,362(+) GCCAG(A/G)GGACG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF555 Gene

Variant ID Type Subtype PubMed ID
nsv910692 CNV Loss 21882294
nsv509715 CNV Insertion 20534489
nsv528638 CNV Gain 19592680
esv27111 CNV Loss 19812545
nsv482209 CNV Loss 20164927
esv2670441 CNV Deletion 23128226

Relevant External Links for ZNF555 Gene

HapMap Linkage Disequilibrium report
ZNF555

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF555 Gene

Disorders for ZNF555 Gene

Relevant External Links for ZNF555

Genetic Association Database (GAD)
ZNF555
genes like me logo Genes that share disorders with ZNF555: view

No data available for UniProtKB/Swiss-Prot for ZNF555 Gene

Publications for ZNF555 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  5. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3

Products for ZNF555 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF555
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF555
  • Block miRNA regulation of ZNF555 using miScript Target Protectors
  • antibodies-online peptides for ZNF555
  • antibodies-online antibodies for ZNF555
  • antibodies-online kits for ZNF555

Sources for ZNF555 Gene

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