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Aliases for ZNF554 Gene

Aliases for ZNF554 Gene

  • Zinc Finger Protein 554 2 3 5

External Ids for ZNF554 Gene

Previous GeneCards Identifiers for ZNF554 Gene

  • GC19P002771
  • GC19P002772
  • GC19P002591

Summaries for ZNF554 Gene

GeneCards Summary for ZNF554 Gene

ZNF554 (Zinc Finger Protein 554) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF8.

UniProtKB/Swiss-Prot for ZNF554 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF554 Gene

Genomics for ZNF554 Gene

Regulatory Elements for ZNF554 Gene

Enhancers for ZNF554 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G002781 1.4 ENCODE dbSUPER 33.3 -35.5 -35545 4.9 CREB3L1 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ZNF610 ZNF554 THOP1 SF3A2 LOC100288123 CACTIN CACTIN-AS1 ZNF77 APBA3 ENSG00000267139 SGTA
GH19G002788 0.9 ENCODE 33.2 -30.3 -30280 2.3 HDGF PKNOX1 TBL1XR1 DMAP1 YY1 RARA SLC30A9 EGR1 SCRT2 RELB ZNF554 THOP1 GC19P002822
GH19G002819 1.1 ENCODE 27 +0.1 82 1.5 CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143 KLF13 ZNF554 THOP1 ZNF556 ZNF57 LOC101928631 SLC39A3 ZNF77 GC19P002827
GH19G003034 2 FANTOM5 Ensembl ENCODE dbSUPER 14.1 +216.0 215956 3.6 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC TBX21 MEF2D ZNF77 CACTIN ZNF554 SF3A2 CACTIN-AS1 APBA3 DOHH THOP1 SGTA NCLN
GH19G002160 1.8 FANTOM5 ENCODE dbSUPER 14.1 -652.1 -652134 13.7 CREB3L1 MLX ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 SP3 ZNF77 SF3A2 LOC100288123 CIRBP GADD45B ENSG00000267139 DOT1L ENSG00000267317 ZNF554 ADAT3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF554 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF554 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000105947 227 1400 CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143 KLF13

Genomic Location for ZNF554 Gene

Chromosome:
19
Start:
2,819,874 bp from pter
End:
2,836,735 bp from pter
Size:
16,862 bases
Orientation:
Plus strand

Genomic View for ZNF554 Gene

Genes around ZNF554 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF554 Gene

Proteins for ZNF554 Gene

  • Protein details for ZNF554 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86TJ5-ZN554_HUMAN
    Recommended name:
    Zinc finger protein 554
    Protein Accession:
    Q86TJ5
    Secondary Accessions:
    • Q8NAT3
    • Q9BWN3

    Protein attributes for ZNF554 Gene

    Size:
    538 amino acids
    Molecular mass:
    60582 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH00113.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF554 Gene

Post-translational modifications for ZNF554 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF554 Gene

Domains & Families for ZNF554 Gene

Gene Families for ZNF554 Gene

Protein Domains for ZNF554 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF554 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86TJ5

UniProtKB/Swiss-Prot:

ZN554_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF554: view

Function for ZNF554 Gene

Molecular function for ZNF554 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF554 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF554: view
genes like me logo Genes that share phenotypes with ZNF554: view

Animal Model Products

CRISPR Products

miRNA for ZNF554 Gene

miRTarBase miRNAs that target ZNF554

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF554 Gene

Localization for ZNF554 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF554 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF554 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF554 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with ZNF554: view

Pathways & Interactions for ZNF554 Gene

SuperPathways for ZNF554 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF554: view

Pathways by source for ZNF554 Gene

2 Reactome pathways for ZNF554 Gene

Gene Ontology (GO) - Biological Process for ZNF554 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF554: view

No data available for SIGNOR curated interactions for ZNF554 Gene

Drugs & Compounds for ZNF554 Gene

No Compound Related Data Available

Transcripts for ZNF554 Gene

Unigene Clusters for ZNF554 Gene

Zinc finger protein 554:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF554 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b
SP1: - -
SP2:
SP3:

Relevant External Links for ZNF554 Gene

GeneLoc Exon Structure for
ZNF554
ECgene alternative splicing isoforms for
ZNF554

Expression for ZNF554 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF554 Gene

Protein differential expression in normal tissues from HIPED for ZNF554 Gene

This gene is overexpressed in Tlymphocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF554 Gene



Protein tissue co-expression partners for ZNF554 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF554 Gene:

ZNF554

SOURCE GeneReport for Unigene cluster for ZNF554 Gene:

Hs.307043

Evidence on tissue expression from TISSUES for ZNF554 Gene

  • Eye(4.1)
  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with ZNF554: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF554 Gene

Orthologs for ZNF554 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZNF554 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF554 34 35
  • 98.76 (n)
dog
(Canis familiaris)
Mammalia ZNF554 34 35
  • 79.06 (n)
cow
(Bos Taurus)
Mammalia ZNF554 34 35
  • 78.85 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG6654 35
  • 20 (a)
OneToMany
Species where no ortholog for ZNF554 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF554 Gene

ENSEMBL:
Gene Tree for ZNF554 (if available)
TreeFam:
Gene Tree for ZNF554 (if available)

Paralogs for ZNF554 Gene

Paralogs for ZNF554 Gene

(505) SIMAP similar genes for ZNF554 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF554: view

Variants for ZNF554 Gene

Sequence variations from dbSNP and Humsavar for ZNF554 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000127411 -- 2,823,334(+) ATTAC(A/G)GGATC intron-variant
rs1000207293 -- 2,825,404(+) CCTCC(C/T)GGGTT intron-variant, upstream-variant-2KB
rs1000213156 -- 2,830,831(+) CAATC(C/T)AGGCT intron-variant
rs1000263844 -- 2,830,584(+) CTGCC(A/G)TACTG intron-variant
rs1000448791 -- 2,820,145(+) TCCCG(C/T)GCCGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF554 Gene

Variant ID Type Subtype PubMed ID
esv2118962 CNV deletion 18987734
esv2673992 CNV deletion 23128226
esv2717914 CNV deletion 23290073
esv2717915 CNV deletion 23290073
esv2717916 CNV deletion 23290073
esv3643439 CNV loss 21293372
esv3643440 CNV loss 21293372
nsv1140363 CNV deletion 24896259
nsv509715 CNV insertion 20534489
nsv528638 CNV gain 19592680

Variation tolerance for ZNF554 Gene

Residual Variation Intolerance Score: 94.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.97; 68.13% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF554 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF554

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF554 Gene

Disorders for ZNF554 Gene

Relevant External Links for ZNF554

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF554

No disorders were found for ZNF554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF554 Gene

Publications for ZNF554 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3 64

Products for ZNF554 Gene

Sources for ZNF554 Gene

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