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Aliases for ZNF552 Gene

Aliases for ZNF552 Gene

  • Zinc Finger Protein 552 2 3

External Ids for ZNF552 Gene

Summaries for ZNF552 Gene

GeneCards Summary for ZNF552 Gene

ZNF552 (Zinc Finger Protein 552) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF17.

UniProtKB/Swiss-Prot for ZNF552 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF552 Gene

Genomics for ZNF552 Gene

Genomic Location for ZNF552 Gene

Start:
57,803,841 bp from pter
End:
57,815,161 bp from pter
Size:
11,321 bases
Orientation:
Minus strand

Genomic View for ZNF552 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF552 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF552 Gene

Regulatory Elements for ZNF552 Gene

Proteins for ZNF552 Gene

  • Protein details for ZNF552 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H707-ZN552_HUMAN
    Recommended name:
    Zinc finger protein 552
    Protein Accession:
    Q9H707
    Secondary Accessions:
    • B3KUE9
    • Q6P5A6

    Protein attributes for ZNF552 Gene

    Size:
    407 amino acids
    Molecular mass:
    46198 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15093.1; Type=Frameshift; Positions=388; Evidence={ECO:0000305};

neXtProt entry for ZNF552 Gene

Proteomics data for ZNF552 Gene at MOPED

Post-translational modifications for ZNF552 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF552 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF552 Gene

Domains for ZNF552 Gene

Gene Families for ZNF552 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZNF552 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H707

UniProtKB/Swiss-Prot:

ZN552_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q9H707
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q9H707
Similarity:
  • Contains 9 C2H2-type zinc fingers.:
    • Q9H707
genes like me logo Genes that share domains with ZNF552: view

Function for ZNF552 Gene

Molecular function for ZNF552 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF552 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF552: view

Phenotypes for ZNF552 Gene

genes like me logo Genes that share phenotypes with ZNF552: view

miRNA for ZNF552 Gene

miRTarBase miRNAs that target ZNF552

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF552 Gene

Localization for ZNF552 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF552 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF552 Gene COMPARTMENTS Subcellular localization image for ZNF552 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for ZNF552 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF552: view

Pathways for ZNF552 Gene

SuperPathways for ZNF552 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF552: view

Pathways by source for ZNF552 Gene

2 Reactome pathways for ZNF552 Gene

Interacting Proteins for ZNF552 Gene

Gene Ontology (GO) - Biological Process for ZNF552 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF552: view

Transcripts for ZNF552 Gene

Unigene Clusters for ZNF552 Gene

Zinc finger protein 552:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF552 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b
SP1: -
SP2:
SP3: - -

Relevant External Links for ZNF552 Gene

GeneLoc Exon Structure for
ZNF552
ECgene alternative splicing isoforms for
ZNF552

Expression for ZNF552 Gene

mRNA expression in normal human tissues for ZNF552 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF552 Gene

This gene is overexpressed in Bladder (5.4) and Whole Blood (5.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF552 Gene

SOURCE GeneReport for Unigene cluster for ZNF552 Gene Hs.560727

genes like me logo Genes that share expressions with ZNF552: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZNF552 Gene

Orthologs for ZNF552 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF552 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF552 35
  • 98.85 (n)
  • 97.54 (a)
ZNF552 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 41 (a)
OneToMany
Species with no ortholog for ZNF552:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF552 Gene

ENSEMBL:
Gene Tree for ZNF552 (if available)
TreeFam:
Gene Tree for ZNF552 (if available)

Paralogs for ZNF552 Gene

Selected SIMAP similar genes for ZNF552 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF552: view

Variants for ZNF552 Gene

Sequence variations from dbSNP and Humsavar for ZNF552 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs376870 -- 57,813,284(-) GTTGC(C/T)CACAC intron-variant
rs376917 -- 57,813,249(-) TCTGT(C/T)TTTCC intron-variant
rs417518 -- 57,813,325(-) GTGAC(G/T)CTGGA reference, synonymous-codon
rs2001798 -- 57,809,143(+) AACTC(G/T)GGTGG intron-variant
rs2288538 - 57,808,538(-) GTGTG(C/G)TGTGA missense, reference

Structural Variations from Database of Genomic Variants (DGV) for ZNF552 Gene

Variant ID Type Subtype PubMed ID
nsv912528 CNV Gain 21882294
nsv912529 CNV Loss 21882294
nsv520155 CNV Loss 19592680
nsv912530 CNV Gain 21882294
dgv4029n71 CNV Gain 21882294
nsv7311 OTHER Inversion 18451855

Relevant External Links for ZNF552 Gene

HapMap Linkage Disequilibrium report
ZNF552

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF552 Gene

Disorders for ZNF552 Gene

No disorders were found for ZNF552 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF552 Gene

Publications for ZNF552 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3
  4. ZNF552, a novel human KRAB/C2H2 zinc finger protein, inhibits AP-1- and SRE-mediated transcriptional activity. (PMID: 20356460) Deng Y. … Yuan W. (BMB Rep 2010) 3
  5. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3

Products for ZNF552 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF552
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF552
  • Block miRNA regulation of ZNF552 using miScript Target Protectors

Sources for ZNF552 Gene

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