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Aliases for ZNF544 Gene

Aliases for ZNF544 Gene

  • Zinc Finger Protein 544 2 3
  • Zinc Finger Protein AF020591 2

External Ids for ZNF544 Gene

Summaries for ZNF544 Gene

GeneCards Summary for ZNF544 Gene

ZNF544 (Zinc Finger Protein 544) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF10.

UniProtKB/Swiss-Prot for ZNF544 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF544 Gene

Genomics for ZNF544 Gene

Genomic Location for ZNF544 Gene

Start:
58,228,594 bp from pter
End:
58,277,495 bp from pter
Size:
48,902 bases
Orientation:
Plus strand

Genomic View for ZNF544 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF544 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF544 Gene

Regulatory Elements for ZNF544 Gene

Proteins for ZNF544 Gene

  • Protein details for ZNF544 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NX49-ZN544_HUMAN
    Recommended name:
    Zinc finger protein 544
    Protein Accession:
    Q6NX49
    Secondary Accessions:
    • A8K6J1
    • Q9UEX4

    Protein attributes for ZNF544 Gene

    Size:
    715 amino acids
    Molecular mass:
    81742 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF544 Gene

Proteomics data for ZNF544 Gene at MOPED

Post-translational modifications for ZNF544 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF544 Gene

Domains for ZNF544 Gene

Gene Families for ZNF544 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF544 Gene

UniProtKB/Swiss-Prot:

ZN544_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q6NX49
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q6NX49
Similarity:
  • Contains 13 C2H2-type zinc fingers.:
    • Q6NX49
genes like me logo Genes that share domains with ZNF544: view

Function for ZNF544 Gene

Molecular function for ZNF544 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF544 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IBA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF544: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF544 Gene

Localization for ZNF544 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF544 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF544 Gene COMPARTMENTS Subcellular localization image for ZNF544 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF544 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF544: view

Pathways for ZNF544 Gene

SuperPathways for ZNF544 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF544: view

Pathways by source for ZNF544 Gene

2 Reactome pathways for ZNF544 Gene

Gene Ontology (GO) - Biological Process for ZNF544 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF544: view

Transcripts for ZNF544 Gene

Unigene Clusters for ZNF544 Gene

Zinc finger protein 544:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF544 Gene

No ASD Table

Relevant External Links for ZNF544 Gene

GeneLoc Exon Structure for
ZNF544
ECgene alternative splicing isoforms for
ZNF544

Expression for ZNF544 Gene

mRNA expression in normal human tissues for ZNF544 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF544 Gene

SOURCE GeneReport for Unigene cluster for ZNF544 Gene Hs.438994

genes like me logo Genes that share expressions with ZNF544: view

Orthologs for ZNF544 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF544 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF544 36
  • 99.39 (n)
  • 98.87 (a)
ZNF544 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 42 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 47 (a)
ManyToMany
ZNF544 36
  • 73.03 (n)
  • 61.06 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 47 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 45 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 37 (a)
OneToMany
Species with no ortholog for ZNF544:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF544 Gene

ENSEMBL:
Gene Tree for ZNF544 (if available)
TreeFam:
Gene Tree for ZNF544 (if available)

Paralogs for ZNF544 Gene

Selected SIMAP similar genes for ZNF544 Gene using alignment to 9 proteins:

genes like me logo Genes that share paralogs with ZNF544: view

Variants for ZNF544 Gene

Sequence variations from dbSNP and Humsavar for ZNF544 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs48524 -- 58,233,567(+) GGTAG(A/G)TTATA intron-variant
rs63283 -- 58,229,124(+) GATCG(A/G)GATCT intron-variant
rs166343 -- 58,263,816(+) GGggc(C/T)gggca downstream-variant-500B
rs171851 -- 58,247,534(-) acctg(C/T)aatct intron-variant
rs171852 -- 58,243,020(-) tgaga(A/C)ccccc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF544 Gene

Variant ID Type Subtype PubMed ID
nsv833886 CNV Gain 17160897
nsv912537 CNV Loss 21882294
esv989961 CNV Insertion 20482838
esv1513336 CNV Insertion 17803354
esv2087272 CNV Deletion 18987734
esv2664815 CNV Deletion 23128226
esv1001037 CNV Deletion 20482838
esv1435930 CNV Deletion 17803354
nsv833887 CNV Loss 17160897

Relevant External Links for ZNF544 Gene

HapMap Linkage Disequilibrium report
ZNF544

Disorders for ZNF544 Gene

Relevant External Links for ZNF544

Genetic Association Database (GAD)
ZNF544
genes like me logo Genes that share disorders with ZNF544: view

No data available for UniProtKB/Swiss-Prot for ZNF544 Gene

Publications for ZNF544 Gene

  1. Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations. (PMID: 18821565) Lasky-Su J. … Faraone S.V. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2008) 3 49
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for ZNF544 Gene

  • antibodies-online proteins for ZNF544
  • antibodies-online antibodies for ZNF544
  • antibodies-online kits for ZNF544

Sources for ZNF544 Gene

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