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Aliases for ZNF543 Gene

Aliases for ZNF543 Gene

  • Zinc Finger Protein 543 2 3 5

External Ids for ZNF543 Gene

Previous GeneCards Identifiers for ZNF543 Gene

  • GC00U914381
  • GC19P062525
  • GC19P062523
  • GC19P057831
  • GC19P054146

Summaries for ZNF543 Gene

GeneCards Summary for ZNF543 Gene

ZNF543 (Zinc Finger Protein 543) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF805.

UniProtKB/Swiss-Prot for ZNF543 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF543 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF543 Gene

Genomics for ZNF543 Gene

Regulatory Elements for ZNF543 Gene

Enhancers for ZNF543 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H056594 1 ENCODE 86.7 -725.1 -725057 1 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 YY1 ETS1 U2AF2 ZNF17 ZNF264 ZNF773 ZNF543 ZNF549 ENSG00000269696 ZNF550 ZFP28 ZNF470
GH19H058181 1.1 ENCODE 69.3 +862.7 862740 2 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CBX5 ZNF134 ZNF606 ZNF17 ZNF417 ZNF549 ZNF773 ZNF550 ZNF543 ZNF256 LOC105372483
GH19H057809 1.6 FANTOM5 ENCODE dbSUPER 32 +492.7 492721 7 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 TRIM28 ZNF264 ZNF805 ZNF543 ENSG00000269867 ZNF134 ZNF587 ZNF324B ZNF586 ZNF416
GH19H058277 1.1 ENCODE 28.9 +958.6 958638 2 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 ZNF207 TRIM28 ZNF543 ZNF417 ZNF548 ZNF550 LOC105372482 ZNF17 ZNF606 ZNF134 ZNF549
GH19H057499 1 ENCODE 31.2 +179.7 179725 1 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 ETS1 ZNF419 ZNF264 ZNF805 ZNF543 ZNF548 ZNF550 ZNF134 ZNF773 VN1R1 ZNF417
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF543 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF543 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111792 104 1600 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 SP3

Genomic Location for ZNF543 Gene

Chromosome:
19
Start:
57,320,497 bp from pter
End:
57,330,776 bp from pter
Size:
10,280 bases
Orientation:
Plus strand

Genomic View for ZNF543 Gene

Genes around ZNF543 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF543 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF543 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF543 Gene

Proteins for ZNF543 Gene

  • Protein details for ZNF543 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q08ER8-ZN543_HUMAN
    Recommended name:
    Zinc finger protein 543
    Protein Accession:
    Q08ER8
    Secondary Accessions:
    • Q495U9
    • Q495V0
    • Q6ZMP4
    • Q8NCX4

    Protein attributes for ZNF543 Gene

    Size:
    600 amino acids
    Molecular mass:
    68404 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF543 Gene

Post-translational modifications for ZNF543 Gene

  • Ubiquitination at Lys337
  • Modification sites at PhosphoSitePlus

Other Protein References for ZNF543 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF543 Gene

Domains & Families for ZNF543 Gene

Gene Families for ZNF543 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF543 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF543 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q08ER8

UniProtKB/Swiss-Prot:

ZN543_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF543: view

Function for ZNF543 Gene

Molecular function for ZNF543 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF543 Gene

Gene Ontology (GO) - Molecular Function for ZNF543 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF543: view

Phenotypes for ZNF543 Gene

GenomeRNAi human phenotypes for ZNF543:
genes like me logo Genes that share phenotypes with ZNF543: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ZNF543
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF543 Gene

Localization for ZNF543 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF543 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF543 gene
Compartment Confidence
nucleus 5
cytosol 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nuclear speckles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZNF543 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF543: view

Pathways & Interactions for ZNF543 Gene

SuperPathways for ZNF543 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF543: view

Pathways by source for ZNF543 Gene

2 Reactome pathways for ZNF543 Gene

Gene Ontology (GO) - Biological Process for ZNF543 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF543: view

No data available for SIGNOR curated interactions for ZNF543 Gene

Drugs & Compounds for ZNF543 Gene

No Compound Related Data Available

Transcripts for ZNF543 Gene

mRNA/cDNA for ZNF543 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(24) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF543 Gene

Zinc finger protein 543:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ZNF543
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF543 Gene

No ASD Table

Relevant External Links for ZNF543 Gene

GeneLoc Exon Structure for
ZNF543
ECgene alternative splicing isoforms for
ZNF543

Expression for ZNF543 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF543 Gene

Protein differential expression in normal tissues from HIPED for ZNF543 Gene

This gene is overexpressed in Spinal cord (38.3) and Frontal cortex (30.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZNF543 Gene



Protein tissue co-expression partners for ZNF543 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF543 Gene:

ZNF543

SOURCE GeneReport for Unigene cluster for ZNF543 Gene:

Hs.202544
genes like me logo Genes that share expression patterns with ZNF543: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF543 Gene

Orthologs for ZNF543 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF543 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF543 33 34
  • 98.94 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 42 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii si:dkey-7j22.3 34
  • 51 (a)
ManyToMany
CU138542.3 34
  • 45 (a)
ManyToMany
Species where no ortholog for ZNF543 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF543 Gene

ENSEMBL:
Gene Tree for ZNF543 (if available)
TreeFam:
Gene Tree for ZNF543 (if available)

Paralogs for ZNF543 Gene

Paralogs for ZNF543 Gene

(496) SIMAP similar genes for ZNF543 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF543: view

Variants for ZNF543 Gene

Sequence variations from dbSNP and Humsavar for ZNF543 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000102991 -- 57,323,784(+) TGGAG(A/G)CCTGC reference, missense
rs1000267660 -- 57,327,058(+) GAGAT(A/G)GTCTT intron-variant
rs1000293496 -- 57,321,186(+) CTCTC(C/T)ATTTT intron-variant
rs1000324093 -- 57,321,401(+) ACGCA(C/T)TTGCC intron-variant
rs1000432277 -- 57,321,332(+) CTGGC(C/T)TCTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF543 Gene

Variant ID Type Subtype PubMed ID
dgv602n67 CNV gain 20364138
esv2531361 CNV insertion 19546169
esv25537 CNV gain 19812545
esv2659236 CNV deletion 23128226
esv3644901 CNV loss 21293372
esv3893257 CNV loss 25118596
nsv580400 CNV gain 21841781
nsv819727 CNV gain 19587683
nsv819877 CNV loss 19587683
nsv821238 CNV deletion 20802225

Variation tolerance for ZNF543 Gene

Residual Variation Intolerance Score: 69% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.17; 80.80% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF543 Gene

Human Gene Mutation Database (HGMD)
ZNF543
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF543

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF543 Gene

Disorders for ZNF543 Gene

Relevant External Links for ZNF543

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF543

No disorders were found for ZNF543 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF543 Gene

Publications for ZNF543 Gene

  1. Novel genes and variants associated with IgA nephropathy by co-segregating with the disease phenotypes in 10 IgAN families. (PMID: 26095808) Liu R … Wang Y (Gene 2015) 3 60
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3 60
  4. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for ZNF543 Gene

Sources for ZNF543 Gene

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