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Aliases for ZNF542P Gene

Aliases for ZNF542P Gene

  • Zinc Finger Protein 542, Pseudogene 2 3 5
  • ZNF542 3 4
  • Zinc Finger Protein 542 Pseudogene 4
  • Zinc Finger Protein Pseudogene 3
  • Zinc Finger Protein 542 2

External Ids for ZNF542P Gene

Previous HGNC Symbols for ZNF542P Gene

  • ZNF542

Previous GeneCards Identifiers for ZNF542P Gene

  • GC19P056883

Summaries for ZNF542P Gene

GeneCards Summary for ZNF542P Gene

ZNF542P (Zinc Finger Protein 542, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for ZNF542P Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF542P Gene

Genomics for ZNF542P Gene

Regulatory Elements for ZNF542P Gene

Enhancers for ZNF542P Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZNF542P on UCSC Golden Path with GeneCards custom track

Promoters for ZNF542P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZNF542P on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNF542P Gene

Chromosome:
19
Start:
56,368,099 bp from pter
End:
56,379,828 bp from pter
Size:
11,730 bases
Orientation:
Plus strand

Genomic View for ZNF542P Gene

Genes around ZNF542P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF542P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF542P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF542P Gene

Proteins for ZNF542P Gene

  • Protein details for ZNF542P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5EBM4-ZN542_HUMAN
    Recommended name:
    Putative zinc finger protein 542
    Protein Accession:
    Q5EBM4
    Secondary Accessions:
    • B3KUG2
    • B4DLV1
    • Q6N061

    Protein attributes for ZNF542P Gene

    Size:
    170 amino acids
    Molecular mass:
    19729 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG53424.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAE45809.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF542P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF542P Gene

Proteomics data for ZNF542P Gene at MOPED

Post-translational modifications for ZNF542P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF542P Gene

Domains & Families for ZNF542P Gene

Gene Families for ZNF542P Gene

Protein Domains for ZNF542P Gene

Suggested Antigen Peptide Sequences for ZNF542P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5EBM4

UniProtKB/Swiss-Prot:

ZN542_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 3 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 3 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF542P: view

Function for ZNF542P Gene

Molecular function for ZNF542P Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes for ZNF542P Gene

genes like me logo Genes that share phenotypes with ZNF542P: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF542P Gene

Localization for ZNF542P Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF542P Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF542P Gene

Pathways & Interactions for ZNF542P Gene

SuperPathways for ZNF542P Gene

No Data Available

Interacting Proteins for ZNF542P Gene

Gene Ontology (GO) - Biological Process for ZNF542P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF542P Gene

Drugs & Compounds for ZNF542P Gene

No Compound Related Data Available

Transcripts for ZNF542P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF542P Gene

No ASD Table

Relevant External Links for ZNF542P Gene

GeneLoc Exon Structure for
ZNF542P
ECgene alternative splicing isoforms for
ZNF542P

Expression for ZNF542P Gene

mRNA expression in normal human tissues for ZNF542P Gene

genes like me logo Genes that share expression patterns with ZNF542P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ZNF542P Gene

Orthologs for ZNF542P Gene

Evolution for ZNF542P Gene

ENSEMBL:
Gene Tree for ZNF542P (if available)
TreeFam:
Gene Tree for ZNF542P (if available)

No data available for Orthologs for ZNF542P Gene

Paralogs for ZNF542P Gene

No data available for Paralogs for ZNF542P Gene

Variants for ZNF542P Gene

Sequence variations from dbSNP and Humsavar for ZNF542P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs28391848 -- 56,370,428(+) ATTTT(G/T)TTTGT intron-variant
rs140879305 -- 56,372,303(+) CTACC(C/G)TAAAA intron-variant
rs73937251 -- 56,374,061(+) GACCA(C/T)CCCCA intron-variant
rs73937252 -- 56,374,315(+) TTAGA(A/G)TTTAT intron-variant
rs185927487 -- 56,370,979(+) ATGGG(C/T)GTATT intron-variant

Relevant External Links for ZNF542P Gene

HapMap Linkage Disequilibrium report
ZNF542P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF542P Gene

Disorders for ZNF542P Gene

Relevant External Links for ZNF542P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF542P

No disorders were found for ZNF542P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF542P Gene

Publications for ZNF542P Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZNF542P Gene

Sources for ZNF542P Gene

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