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Aliases for ZNF542P Gene

Aliases for ZNF542P Gene

  • Zinc Finger Protein 542, Pseudogene 2 3 5
  • ZNF542 3 4
  • Zinc Finger Protein 542 Pseudogene 4
  • Zinc Finger Protein Pseudogene 3
  • Zinc Finger Protein 542 2

External Ids for ZNF542P Gene

Previous HGNC Symbols for ZNF542P Gene

  • ZNF542

Previous GeneCards Identifiers for ZNF542P Gene

  • GC19P056883

Summaries for ZNF542P Gene

GeneCards Summary for ZNF542P Gene

ZNF542P (Zinc Finger Protein 542, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for ZNF542P Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF542P Gene

Genomics for ZNF542P Gene

Regulatory Elements for ZNF542P Gene

Enhancers for ZNF542P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F055671 1.1 ENCODE 17.2 -691.6 -691597 10.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF583 ZNF470 ZNF582-AS1 ENSG00000269696 ZNF542P ZNF667-AS1 ENSG00000267224 ZFP28 ZNF667 LOC729999
GH19F057171 0.5 Ensembl ENCODE 12.1 +804.3 804302 2.0 ZNF48 ZNF2 ZNF366 ZNF548 SP3 CEBPB ZFP69B ZNF585B ZNF341 GLIS1 LOC100132009 ZNF17 ZNF134 ZNF773 ZNF417 ZNF805 ZNF606 ZNF549 AURKC ZNF256
GH19F056367 0.9 ENCODE 9.7 +0.4 394 2.0 ATF1 MLX CREB3L1 ARID4B GLI4 DMAP1 ZNF2 YY1 SLC30A9 GLIS2 ENSG00000267429 ZNF542P ENSG00000267192 ZSCAN5A PIR54720
GH19F056383 0.5 ENCODE 8.5 +16.2 16234 0.7 FOS ZNF667 ZNF667-AS1 ZNF542P SLC25A36P1 ENSG00000267459
GH19F056832 0.5 ENCODE 5.4 +464.4 464369 0.5 PAF1 HMG20A RARA ZNF335 SSRP1 POLR2A TCF7 NR2F6 ZNF542P PEG3 PIR35228 GC19M056816
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF542P on UCSC Golden Path with GeneCards custom track

Promoters for ZNF542P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001819012 402 1800 ATF1 CREB3L1 ARID4B GLI4 DMAP1 ZNF2 YY1 SLC30A9 GLIS2 ZNF143
ENSR00000642077 1601 200 TBP ELF3 MLX ARID4B DMAP1 RAD21 THRB ZSCAN9 RARA SLC30A9

Genomic Location for ZNF542P Gene

Chromosome:
19
Start:
56,368,099 bp from pter
End:
56,379,828 bp from pter
Size:
11,730 bases
Orientation:
Plus strand

Genomic View for ZNF542P Gene

Genes around ZNF542P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF542P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF542P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF542P Gene

Proteins for ZNF542P Gene

  • Protein details for ZNF542P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5EBM4-ZN542_HUMAN
    Recommended name:
    Putative zinc finger protein 542
    Protein Accession:
    Q5EBM4
    Secondary Accessions:
    • B3KUG2
    • B4DLV1
    • Q6N061

    Protein attributes for ZNF542P Gene

    Size:
    170 amino acids
    Molecular mass:
    19729 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG53424.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAE45809.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF542P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF542P Gene

Post-translational modifications for ZNF542P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF542P Gene

Domains & Families for ZNF542P Gene

Gene Families for ZNF542P Gene

Protein Domains for ZNF542P Gene

Suggested Antigen Peptide Sequences for ZNF542P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5EBM4

UniProtKB/Swiss-Prot:

ZN542_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 3 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 3 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF542P: view

Function for ZNF542P Gene

Molecular function for ZNF542P Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF542P: view
genes like me logo Genes that share phenotypes with ZNF542P: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF542P Gene

Localization for ZNF542P Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF542P Gene

Gene Ontology (GO) - Cellular Components for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Subcellular locations from COMPARTMENTS for ZNF542P Gene

Pathways & Interactions for ZNF542P Gene

SuperPathways for ZNF542P Gene

No Data Available

Interacting Proteins for ZNF542P Gene

Gene Ontology (GO) - Biological Process for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF542P Gene

Transcripts for ZNF542P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF542P Gene

No ASD Table

Relevant External Links for ZNF542P Gene

GeneLoc Exon Structure for
ZNF542P
ECgene alternative splicing isoforms for
ZNF542P

Expression for ZNF542P Gene

mRNA expression in normal human tissues for ZNF542P Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF542P Gene:

ZNF542P
genes like me logo Genes that share expression patterns with ZNF542P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF542P Gene

Orthologs for ZNF542P Gene

Evolution for ZNF542P Gene

ENSEMBL:
Gene Tree for ZNF542P (if available)
TreeFam:
Gene Tree for ZNF542P (if available)

No data available for Orthologs for ZNF542P Gene

Paralogs for ZNF542P Gene

No data available for Paralogs for ZNF542P Gene

Variants for ZNF542P Gene

Sequence variations from dbSNP and Humsavar for ZNF542P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10403557 -- 56,377,963(+) AAATT(C/T)AGCAA nc-transcript-variant
rs10413341 -- 56,366,798(+) ctaag(C/T)ttata intron-variant, upstream-variant-2KB
rs10414446 -- 56,367,276(+) ttcaa(A/T)ccagg intron-variant, upstream-variant-2KB
rs10419074 -- 56,367,767(+) ACACT(C/T)TACAG intron-variant, upstream-variant-2KB
rs10419213 -- 56,367,698(+) GTTCC(A/G)TGCAC intron-variant, upstream-variant-2KB

Relevant External Links for ZNF542P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF542P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF542P Gene

Disorders for ZNF542P Gene

Relevant External Links for ZNF542P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF542P

No disorders were found for ZNF542P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF542P Gene

Publications for ZNF542P Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for ZNF542P Gene

Sources for ZNF542P Gene

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