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Aliases for ZNF542P Gene

Aliases for ZNF542P Gene

  • Zinc Finger Protein 542, Pseudogene 2 3 5
  • ZNF542 3 4
  • Zinc Finger Protein 542 Pseudogene 4
  • Zinc Finger Protein Pseudogene 3
  • Zinc Finger Protein 542 2

External Ids for ZNF542P Gene

Previous HGNC Symbols for ZNF542P Gene

  • ZNF542

Previous GeneCards Identifiers for ZNF542P Gene

  • GC19P056883

Summaries for ZNF542P Gene

GeneCards Summary for ZNF542P Gene

ZNF542P (Zinc Finger Protein 542, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for ZNF542P Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF542P Gene

Genomics for ZNF542P Gene

Regulatory Elements for ZNF542P Gene

Enhancers for ZNF542P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G055503 1.3 Ensembl ENCODE 46.2 -864.1 -864131 1.6 PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF416 FIZ1 ZNF667 ZNF667-AS1 ZNF582-AS1 NAT14 ZNF542P ZNF583 U2AF2 LOC729999 ZNF580
GH19G055519 1.6 FANTOM5 Ensembl ENCODE 32.7 -847.9 -847890 1.0 HDGF ATF1 ZNF493 ZNF133 YBX1 GLI4 ZNF416 FOS ZNF548 SP3 FIZ1 ZNF471 NAT14 ZNF580 ZNF667 ZNF582-AS1 ZNF667-AS1 ZNF542P U2AF2 ZNF583
GH19G056594 1 ENCODE 46.3 +227.3 227342 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF17 ENSG00000269696 ZNF549 ZNF773 ZNF543 U2AF2 ZFP28 ZNF667 ZNF470 FIZ1
GH19G056392 1.1 ENCODE 24.9 +25.4 25358 1.5 CREB3L1 ARNT SIN3A ZNF2 YY1 ZNF766 ZNF416 ZNF143 ZNF207 KLF13 ZNF582-AS1 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696 ZFP28
GH19G056403 1.1 ENCODE 24.8 +36.1 36051 2.0 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF416 ZNF143 ZNF582-AS1 ZFP28 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF542P on UCSC Golden Path with GeneCards custom track

Promoters for ZNF542P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111749 402 1800 ATF1 CREB3L1 ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 SLC30A9 GLIS2

Genomic Location for ZNF542P Gene

Chromosome:
19
Start:
56,368,099 bp from pter
End:
56,379,828 bp from pter
Size:
11,730 bases
Orientation:
Plus strand

Genomic View for ZNF542P Gene

Genes around ZNF542P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF542P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF542P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF542P Gene

Proteins for ZNF542P Gene

  • Protein details for ZNF542P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5EBM4-ZN542_HUMAN
    Recommended name:
    Putative zinc finger protein 542
    Protein Accession:
    Q5EBM4
    Secondary Accessions:
    • B3KUG2
    • B4DLV1
    • Q6N061

    Protein attributes for ZNF542P Gene

    Size:
    170 amino acids
    Molecular mass:
    19729 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG53424.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAE45809.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF542P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF542P Gene

Post-translational modifications for ZNF542P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF542P Gene

Domains & Families for ZNF542P Gene

Gene Families for ZNF542P Gene

Protein Domains for ZNF542P Gene

Suggested Antigen Peptide Sequences for ZNF542P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5EBM4

UniProtKB/Swiss-Prot:

ZN542_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF542P: view

Function for ZNF542P Gene

Molecular function for ZNF542P Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF542P: view
genes like me logo Genes that share phenotypes with ZNF542P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF542P Gene

Localization for ZNF542P Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF542P Gene

Gene Ontology (GO) - Cellular Components for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Subcellular locations from COMPARTMENTS for ZNF542P Gene

Pathways & Interactions for ZNF542P Gene

SuperPathways for ZNF542P Gene

No Data Available

Interacting Proteins for ZNF542P Gene

Gene Ontology (GO) - Biological Process for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF542P Gene

Drugs & Compounds for ZNF542P Gene

No Compound Related Data Available

Transcripts for ZNF542P Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF542P Gene

No ASD Table

Relevant External Links for ZNF542P Gene

GeneLoc Exon Structure for
ZNF542P
ECgene alternative splicing isoforms for
ZNF542P

Expression for ZNF542P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF542P Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF542P Gene:

ZNF542P
genes like me logo Genes that share expression patterns with ZNF542P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF542P Gene

Orthologs for ZNF542P Gene

Evolution for ZNF542P Gene

ENSEMBL:
Gene Tree for ZNF542P (if available)
TreeFam:
Gene Tree for ZNF542P (if available)

No data available for Orthologs for ZNF542P Gene

Paralogs for ZNF542P Gene

No data available for Paralogs for ZNF542P Gene

Variants for ZNF542P Gene

Sequence variations from dbSNP and Humsavar for ZNF542P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000011652 -- 56,380,218(+) TCGGC(C/T)TCCCA downstream-variant-500B
rs1000086638 -- 56,376,382(+) ACCCT(A/G)TCTGC intron-variant
rs1000781430 -- 56,376,058(+) GACCG(C/G)GGTTC intron-variant
rs1000854882 -- 56,375,791(+) TGCTA(A/C)AGTGG intron-variant
rs1001519014 -- 56,379,201(+) TAGGC(C/T)GGGCA nc-transcript-variant

Relevant External Links for ZNF542P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF542P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF542P Gene

Disorders for ZNF542P Gene

Relevant External Links for ZNF542P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF542P

No disorders were found for ZNF542P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF542P Gene

Publications for ZNF542P Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for ZNF542P Gene

Sources for ZNF542P Gene

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