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Aliases for ZNF542P Gene

Aliases for ZNF542P Gene

  • Zinc Finger Protein 542, Pseudogene 2 3
  • ZNF542 3 4
  • Zinc Finger Protein 542 Pseudogene 4
  • Zinc Finger Protein Pseudogene 3
  • Zinc Finger Protein 542 2

External Ids for ZNF542P Gene

Previous HGNC Symbols for ZNF542P Gene

  • ZNF542

Previous GeneCards Identifiers for ZNF542P Gene

  • GC19P056883

Summaries for ZNF542P Gene

GeneCards Summary for ZNF542P Gene

ZNF542P (Zinc Finger Protein 542, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for ZNF542P Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF542P Gene

Genomics for ZNF542P Gene

Genomic Location for ZNF542P Gene

Start:
56,368,099 bp from pter
End:
56,379,828 bp from pter
Size:
11,730 bases
Orientation:
Plus strand

Genomic View for ZNF542P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF542P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF542P Gene

No data available for Regulatory Elements for ZNF542P Gene

Proteins for ZNF542P Gene

  • Protein details for ZNF542P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5EBM4-ZN542_HUMAN
    Recommended name:
    Putative zinc finger protein 542
    Protein Accession:
    Q5EBM4
    Secondary Accessions:
    • B3KUG2
    • B4DLV1
    • Q6N061

    Protein attributes for ZNF542P Gene

    Size:
    170 amino acids
    Molecular mass:
    19729 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG53424.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAE45809.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF542P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF542P Gene

Proteomics data for ZNF542P Gene at MOPED

Post-translational modifications for ZNF542P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF542P Gene

Domains for ZNF542P Gene

Gene Families for ZNF542P Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Graphical View of Domain Structure for InterPro Entry

Q5EBM4

UniProtKB/Swiss-Prot:

ZN542_HUMAN :
  • Q5EBM4
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 3 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF542P: view

No data available for Suggested Antigen Peptide Sequences for ZNF542P Gene

Function for ZNF542P Gene

Molecular function for ZNF542P Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

Phenotypes for ZNF542P Gene

GenomeRNAi human phenotypes for ZNF542P:
genes like me logo Genes that share phenotypes with ZNF542P: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF542P Gene

Localization for ZNF542P Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF542P Gene

Gene Ontology (GO) - Cellular Components for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Subcellular locations from COMPARTMENTS for ZNF542P Gene

Pathways for ZNF542P Gene

SuperPathways for ZNF542P Gene

No Data Available

Interacting Proteins for ZNF542P Gene

Gene Ontology (GO) - Biological Process for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Pathways by source for ZNF542P Gene

Transcripts for ZNF542P Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF542P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZNF542P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF542P Gene

No ASD Table

Relevant External Links for ZNF542P Gene

GeneLoc Exon Structure for
ZNF542P
ECgene alternative splicing isoforms for
ZNF542P

Expression for ZNF542P Gene

mRNA expression in normal human tissues for ZNF542P Gene

genes like me logo Genes that share expressions with ZNF542P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF542P Gene

Orthologs for ZNF542P Gene

Evolution for ZNF542P Gene

ENSEMBL:
Gene Tree for ZNF542P (if available)
TreeFam:
Gene Tree for ZNF542P (if available)

No data available for Orthologs for ZNF542P Gene

Paralogs for ZNF542P Gene

No data available for Paralogs for ZNF542P Gene

Variants for ZNF542P Gene

Sequence variations from dbSNP and Humsavar for ZNF542P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2288856 -- 56,368,605(+) AATGC(G/T)CGCGT intron-variant
rs2288857 -- 56,369,181(+) GGTCA(A/G)AGATA intron-variant
rs2288858 -- 56,369,217(+) TTATC(A/C/T)GGGGA intron-variant
rs2288859 -- 56,369,252(+) GAATA(C/T)TCAGT intron-variant
rs2904015 -- 56,371,260(+) ccaaa(C/T)gcagg intron-variant

Relevant External Links for ZNF542P Gene

HapMap Linkage Disequilibrium report
ZNF542P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF542P Gene

Disorders for ZNF542P Gene

No disorders were found for ZNF542P Gene.

No data available for UniProtKB/Swiss-Prot for ZNF542P Gene

Publications for ZNF542P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4

Products for ZNF542P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF542P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF542P
    • Block miRNA regulation of ZNF542P using miScript Target Protectors

    Sources for ZNF542P Gene

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