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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ZNF536 Gene

protein-coding GIFtS: 48
GCID: GC19P030720

zinc finger protein 536

Explore 2 diseases affiliated with
ZNF536 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Zinc Finger Protein 536¹ ²
KIAA0390¹ ³

External Ids:	HGNC: 29025¹	Entrez Gene: 9745²	Ensembl: ENSG00000198597⁷	UniProtKB: O15090³

Export aliases for ZNF536 gene to outside databases

Previous GC identifers: GC19P035555 GC19P030864 GC19P027369

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZN536_HUMAN, O15090

Function: May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence

5'-CCCCCA-3'

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000019.9 NC_018930.1 NT_011109.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ZNF536 gene promoter:
Nkx3-1 E2F-3a E2F-4 E2F-5 Nkx3-1 v4 MyoD CUTL1 E2F-2 E2F E2F-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZNF536 promoter sequence

Search SABiosciences Chromatin IP Primers for ZNF536

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF536

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q12 Ensembl cytogenetic band: 19q12 HGNC cytogenetic band: 19q13.11

ZNF536 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF536 gene location

GeneLoc information about chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19P030720: view genomic region (about GC identifiers)

Start:	30,719,197 bp from pter	End:	31,201,777 bp from pter
Size:	482,581 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZN536_HUMAN, O15090 (See protein sequence)

Recommended Name: Zinc finger protein 536

Size: 1300 amino acids; 141417 Da

Subcellular location: Nucleus (Probable)

Sequence caution: Sequence=BAA20844.2; Type=Erroneous initiation;

Secondary accessions: A2RU18

Explore the universe of human proteins at neXtProt for ZNF536: NX_O15090

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_O15090

ZNF536 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_055532.1

ENSEMBL proteins:

ENSP00000465771 ENSP00000465268 ENSP00000347730 ENSP00000467909

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	Uscn Proteins for ZNF536

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

ZNF536 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ZNF536 for domains About GeneDecksing

3 InterPro domains/families:

IPR015880 Znf_C2H2-like

IPR013087 Znf_C2H2/integrase_DNA-bd

IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry O15090

ProtoNet protein and cluster: O15090

1 Blocks protein family: IPB007086 C2H2-type zinc finger signature

UniProtKB/Swiss-Prot: ZN536_HUMAN, O15090

Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family

Similarity: Contains 9 C2H2-type zinc fingers

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: ZN536_HUMAN, O15090

Function: May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence

5'-CCCCCA-3'

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In Situ Assay
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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008270	zinc ion binding	IEA	--
GO:0044323	retinoic acid-responsive element binding	IEA	--

ZNF536 for ontologies About GeneDecksing

4 GenomeRNAi human phenotypes for ZNF536:

Decreased TP53 protein express

Decreased p24 protein expressi

Downregulation of NF-kappaB pa

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ZNF536

1 Interacting protein for ZNF536 (O15090³) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
WNK1	Q9H4A3³	I2D: score=2

About this table

Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006351	transcription, DNA-dependent	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	IEA	--
GO:0045665	negative regulation of neuron differentiation	IEA	--
GO:0048387	negative regulation of retinoic acid receptor signaling pathway	IEA	--

ZNF536 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for ZNF536
Search CenterWatch for drugs/clinical trials and news about ZNF536 / ZN536

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for ZNF536 gene:

NM_014717.1

Unigene Cluster for ZNF536:

Zinc finger protein 536

Hs.378901 [show with all ESTs]

Unigene Representative Sequence: BC150171

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000590564 ENST00000585628 ENST00000591488 ENST00000355537(uc002nsu.1 uc010edd.1)

ENST00000592773

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		hsa-miR-205 hsa-miR-576-5p hsa-miR-3942-5p hsa-miR-944 hsa-miR-192 hsa-miR-1911* hsa-miR-942 hsa-miR-338-5p

		SwitchGear 3'UTR luciferase reporter plasmid: ZNF536 3' UTR sequence

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Additional cDNA sequence:

AB002388.1 AK091043.1 AK091070.1 AK128073.1 BC132720.1 BC132722.1 BC146757.1 BC150171.1

4 DOTS entries:

DT.212458 DT.100018069 DT.40254417 DT.75150258

24/61 AceView cDNA sequences (see all 61):

AK091043 AB002388 AI796857 Z40380 CA393365 N34714 AA232953 BM721099

AA233043 T16745 BM676961 AW138670 BU734995 T06949 Z44455 AK128073

AW072330 BM705798 AI418999 BM679519 BX119279 H41094 N49972 AA515497

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZNF536 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image

ZNF536 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

2 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Eye

Kidney

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Pancreatic endoderm/endocrine precursor-like cells (A scalable, suspensi...)

See ZNF536 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNF536

SOURCE GeneReport for Unigene cluster: Hs.378901

SABiosciences Custom PCR Arrays for ZNF536

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF536

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for ZNF536 gene from 4/10 species (see all 10) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zfp536^{1 , 5}	zinc finger protein 536^{1, 5}	85.22(n)¹ 88.84(a)¹		7 (24.57 cM)⁵ 243937¹ NM_172385.2¹ NP_759017.1¹ 37472135⁵
chicken (Gallus gallus)	Aves	ZNF536¹	zinc finger protein 536	75.68(n) 82.86(a)		415761 XM_414124.3 XP_414124.2
lizard (Anolis carolinensis)	Reptilia	ZNF536⁶	--	78(a)	1 ↔ 1	GL343299.1(991923-1074395)
zebrafish (Danio rerio)	Actinopterygii	znf536¹	zinc finger protein 536	63.03(n) 63.82(a)		565481 XM_688765.3 XP_693857.3

ENSEMBL Gene Tree for ZNF536 (if available)
TreeFam Gene Tree for ZNF536 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for ZNF536 gene

ZNF217² ZNF219² ZNF516²

18/25 SIMAP similar genes for ZNF536 using alignment to 5 protein entries: ZN536_HUMAN (see all proteins) (see all similar genes):

ZNF219 ZNF516 ZFX HZF16 ZNF410 ZFS-5

A-328A3.4 ZNF ZFP64 ZFS-6 KLF13 DKFZp434J0650

ZNF672 kr-znf3 PLZF ZNF345 ZNF823 KLF1

ZNF536 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 19 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs140145945^1,2	C	other	31039044(+)	`TGAGGG/AGGGCC`	2	/R /G	mis¹		1		NA	4518
rs142521266^1,2		--	30861328(+)	`CCATAA/CACATT`	1	--	us2k¹		0	--	--	--	--
rs146827444^1,2		--	30861447(+)	`CTTTTA/GTGCAC`	1	--	us2k¹		0	--	--	--	--
rs190250551^1,2		--	30861602(+)	`CAATAC/TTTAAC`	1	--	us2k¹		0	--	--	--	--
rs3810304^1,2	C,F,H,	--	30861683(-)	`TAATAC/TCCCCC`	1	--	us2k¹		24		NS EA NA WA CSA	2347
rs3810303^1,2	C,F,A,H,	--	30861745(-)	`TTGATT/GATTAA`	1	--	us2k¹ tfbs³		12		NA WA CSA EA	380
rs115676702^1,2	F,	--	30861878(+)	`CGTTCA/CTTTCA`	1	--	us2k¹		1		WA	118
rs181831650^1,2		--	30861890(+)	`GAAGCC/TGTTAT`	1	--	us2k¹		0	--	--	--	--
rs138719826^1,2		--	30862364(+)	`GTCCCC/TGGAGT`	1	--	us2k¹		0	--	--	--	--
rs11343587^1,2	C	--	30862466(+)	`TCTTG-/TTTTTT`	1	--	us2k¹ trp³		2		NA CSA	4

HapMap Linkage Disequilibrium report for ZNF536 (30719197 - 30969197 bp, first 250kb of ZNF536)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 7 variations for ZNF536
2 CNVs: 89195 78161
5 Indels: 89196 78162 61699 12023 11143

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ZNF536 for disorders About GeneDecksing

2 diseases for ZNF536: About MalaCards

microcephaly neuronitis

Human Genome Epidemiology (HuGE) Navigator: ZNF536 (2 documents)

Export disorders for ZNF536 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZNF536 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF536)

Utopia: connect your pdf to the dynamic
world of online information

Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9205841)^{1, 2, 3} Nagase T.... Ohara O. (1997)
Identification of the DNA binding specificity of the human ZNF219 protein and its function as a transcriptional repressor. (PubMed id 14621294)^{1, 2} Sakai T.... Maeda H. (2003)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
ZNF536, a novel zinc finger protein specifically expressed in the brain, negatively regulates neuron differentiation by repressing r etinoic acid-induced gene transcription. (PubMed id 19398580)¹ Qin Z....Chang Z. (2009)
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)² Mayya V.... Han D.K. (2009)
Genome-wide association with select biomarker traits in the Framingham Heart Study. (PubMed id 17903293)¹ Benjamin E.J....Vasan R.S. (2007)
Functional genomic analysis of oligodendrocyte differ entiation. (PubMed id 17065439)¹ Dugas J.C....Barres B.A. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 9745	HGNC: 29025	AceView: ZNF536	Ensembl:ENSG00000198597	euGenes: HUgn9745
ECgene: ZNF536	H-InvDB: ZNF536

(According to HUGE)
About This Section

HUGE: KIAA0390

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ZNF536	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZNF536 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for ZNF536 gene:
Search GeneIP for patents involving ZNF536

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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ZNF536 Gene

zinc finger protein 536

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ZNF536 Gene

zinc finger protein 536

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