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Aliases for ZNF503-AS2 Gene

Subcategory (RNA class) for ZNF503-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF503-AS2 Gene

  • ZNF503 Antisense RNA 2 2 3 4 5
  • ZNF503 Antisense RNA 2 (Non-Protein Coding) 2 3
  • NCRNA00245 3 4
  • C10orf41 3 4
  • Chromosome 10 Open Reading Frame 41 2
  • Non-Protein Coding RNA 245 2

External Ids for ZNF503-AS2 Gene

Previous HGNC Symbols for ZNF503-AS2 Gene

  • C10orf41
  • NCRNA00245

Previous GeneCards Identifiers for ZNF503-AS2 Gene

  • GC10P077164

Summaries for ZNF503-AS2 Gene

GeneCards Summary for ZNF503-AS2 Gene

ZNF503-AS2 (ZNF503 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF503-AS2 Gene

Genomics for ZNF503-AS2 Gene

Regulatory Elements for ZNF503-AS2 Gene

Enhancers for ZNF503-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G076033 3.1 VISTA FANTOM5 Ensembl ENCODE 11.2 +634.1 634119 5.0 HNRNPUL1 PKNOX1 FOXA2 ATF1 MLX ARID4B FEZF1 DMAP1 ZNF2 ZNF48 LRMDA ZNF503 ZNF503-AS2 ENSG00000236842 RNU6-673P GC10P075984 PIR51450
GH10G075282 2.3 Ensembl ENCODE dbSUPER 10.8 -117.7 -117706 2.0 PKNOX1 ATF1 ARNT INSM2 KLF17 FEZF1 ZNF366 SCRT2 ZNF391 OVOL3 ZNF503 ZNF503-AS2 DUSP13 ZNF503-AS1 DUPD1 ENSG00000223428 GC10M075276 HMGA1P5
GH10G075612 2.3 Ensembl ENCODE 9.9 +212.4 212365 2.2 PKNOX1 ARNT FEZF1 ZNF2 YY1 ZNF121 ZNF302 KLF7 ZNF263 ZNF488 LRMDA MIR606 ENSG00000236842 ZNF503 ZNF503-AS2 GC10M075584 GC10P075624
GH10G075764 1.8 ENCODE 10.1 +363.3 363339 0.2 HDAC1 PKNOX1 ZSCAN4 JUN TEAD3 FOSL1 CTBP1 ZNF791 ZSCAN29 FOS KAT6B ENSG00000236842 LRMDA ZNF503 ZNF503-AS2 GC10P075790 GC10M075724
GH10G075771 1.6 FANTOM5 Ensembl ENCODE 10.1 +371.4 371389 2.6 PKNOX1 FOXA2 SIN3A DMAP1 FEZF1 ZNF2 YY1 FOS ZNF263 SP5 KAT6B MIR606 ENSG00000236842 LRMDA ZNF503 ZNF503-AS2 GC10P075790 GC10M075724
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF503-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF503-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000030075 -1219 7801 HDGF PKNOX1 ARNT AGO1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143

Genomic Location for ZNF503-AS2 Gene

Chromosome:
10
Start:
75,401,519 bp from pter
End:
75,408,982 bp from pter
Size:
7,464 bases
Orientation:
Plus strand

Genomic View for ZNF503-AS2 Gene

Genes around ZNF503-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF503-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF503-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF503-AS2 Gene

Proteins for ZNF503-AS2 Gene

  • Protein details for ZNF503-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEH8-ZNAS2_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by ZNF503-AS2
    Protein Accession:
    A6NEH8

    Protein attributes for ZNF503-AS2 Gene

    Size:
    195 amino acids
    Molecular mass:
    20902 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF503-AS2 Gene

Post-translational modifications for ZNF503-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF503-AS2 Gene

Domains & Families for ZNF503-AS2 Gene

Protein Domains for ZNF503-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF503-AS2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF503-AS2 Gene

Function for ZNF503-AS2 Gene

Phenotypes for ZNF503-AS2 Gene

GenomeRNAi human phenotypes for ZNF503-AS2:
genes like me logo Genes that share phenotypes with ZNF503-AS2: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF503-AS2 Gene

Localization for ZNF503-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF503-AS2 gene
Compartment Confidence
plasma membrane 2
mitochondrion 2
extracellular 1
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZNF503-AS2 Gene

Pathways & Interactions for ZNF503-AS2 Gene

SuperPathways for ZNF503-AS2 Gene

No Data Available

Interacting Proteins for ZNF503-AS2 Gene

Gene Ontology (GO) - Biological Process for ZNF503-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF503-AS2 Gene

Drugs & Compounds for ZNF503-AS2 Gene

No Compound Related Data Available

Transcripts for ZNF503-AS2 Gene

mRNA/cDNA for ZNF503-AS2 Gene

(4) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF503-AS2 Gene

ZNF503 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF503-AS2 Gene

No ASD Table

Relevant External Links for ZNF503-AS2 Gene

GeneLoc Exon Structure for
ZNF503-AS2
ECgene alternative splicing isoforms for
ZNF503-AS2

Expression for ZNF503-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF503-AS2 Gene

Protein differential expression in normal tissues from HIPED for ZNF503-AS2 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZNF503-AS2 Gene



Protein tissue co-expression partners for ZNF503-AS2 Gene

SOURCE GeneReport for Unigene cluster for ZNF503-AS2 Gene:

Hs.534598
genes like me logo Genes that share expression patterns with ZNF503-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF503-AS2 Gene

Orthologs for ZNF503-AS2 Gene

Evolution for ZNF503-AS2 Gene

ENSEMBL:
Gene Tree for ZNF503-AS2 (if available)
TreeFam:
Gene Tree for ZNF503-AS2 (if available)

No data available for Orthologs for ZNF503-AS2 Gene

Paralogs for ZNF503-AS2 Gene

No data available for Paralogs for ZNF503-AS2 Gene

Variants for ZNF503-AS2 Gene

Sequence variations from dbSNP and Humsavar for ZNF503-AS2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000020860 -- 75,402,184(+) CCAGG(A/G)GCGAA nc-transcript-variant, upstream-variant-2KB
rs1000040967 -- 75,403,746(+) AATCT(C/T)CCCTC intron-variant, upstream-variant-2KB
rs1000173764 -- 75,399,910(+) CCGCC(C/T)ACGTC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000268383 -- 75,404,051(+) GAACT(C/T)TCCGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000299723 -- 75,403,872(+) GCCTG(A/G)AGACC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF503-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv163n67 CNV gain 20364138
nsv1042547 CNV gain 25217958
nsv1069060 CNV deletion 25765185
nsv950978 CNV deletion 24416366

Relevant External Links for ZNF503-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF503-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF503-AS2 Gene

Disorders for ZNF503-AS2 Gene

Relevant External Links for ZNF503-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF503-AS2

No disorders were found for ZNF503-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF503-AS2 Gene

Publications for ZNF503-AS2 Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF503-AS2 Gene

Sources for ZNF503-AS2 Gene

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