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ZNF503 Gene

protein-coding   GIFtS: 47
GCID: GC10M077157

Zinc Finger Protein 503

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 5031 2
NOLZ12 3 5
NOLZ-12

External Ids:    HGNC: 235891   Entrez Gene: 848582   Ensembl: ENSG000001656557   OMIM: 6139025   UniProtKB: Q96F453   

Export aliases for ZNF503 gene to outside databases

Previous GC identifers: GC10M076502 GC10M076827 GC10M071156 GC10M077040


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF503 Gene:
ZNF503 (zinc finger protein 503) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF703.

UniProtKB/Swiss-Prot: ZN503_HUMAN, Q96F45
Function: May function as a transcriptional repressor (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF503 gene promoter:
         E2F-4   E2F-3a   E2F-5   E2F-2   Nkx2-5   E47   Evi-1   E2F   E2F-1   Hand1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF503 promoter sequence
   Search Chromatin IP Primers for ZNF503

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF503


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q22.2   Ensembl cytogenetic band:  10q22.2   HGNC cytogenetic band: 10q22.3

ZNF503 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF503 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M077157:  view genomic region     (about GC identifiers)

Start:
77,157,588 bp from pter      End:
77,161,664 bp from pter
Size:
4,077 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN503_HUMAN, Q96F45 (See protein sequence)
Recommended Name: Zinc finger protein 503  
Size: 646 amino acids; 62555 Da
Sequence caution: Sequence=BAC03999.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q8NAC5 Q96E25 Q96IJ0
Alternative splicing: 3 isoforms:  Q96F45-1   Q96F45-2   Q96F45-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZNF503: NX_Q96F45

Explore proteomics data for ZNF503 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF503 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_116161.2  
    ENSEMBL proteins: 
     ENSP00000361602   ENSP00000438988  

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    antibodies-online peptides for ZNF503

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    antibodies-online antibodies for ZNF503 (29 products) 

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    Cloud-Clone Corp. ELISAs for ZNF503
    Cloud-Clone Corp. CLIAs for ZNF503
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    antibodies-online kits for ZNF503 (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR022129 Tscrpt_rep_NocA-like
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96F45

    ProtoNet protein and cluster: Q96F45

    UniProtKB/Swiss-Prot: ZN503_HUMAN, Q96F45
    Similarity: Belongs to the Elbow/Noc family
    Similarity: Contains 1 C2H2-type zinc finger


    Find genes that share domains with ZNF503           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN503_HUMAN, Q96F45
    Function: May function as a transcriptional repressor (By similarity)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF503           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF503:
     Decreased viability with pacli 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF503

    miRNA
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    miRTarBase miRNAs that target ZNF503:
    hsa-mir-181b-5p (MIRT047261), hsa-mir-92a-3p (MIRT049153), hsa-mir-331-3p (MIRT043572), hsa-mir-423-3p (MIRT042518), hsa-mir-335-5p (MIRT019148)

    Block miRNA regulation of human, mouse, rat ZNF503 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZNF503 (see all 39):
    hsa-miR-548j hsa-miR-142-5p hsa-miR-374c hsa-miR-124 hsa-miR-4325 hsa-miR-3613-3p hsa-miR-506 hsa-miR-548d-5p
    SwitchGear 3'UTR luciferase reporter plasmidZNF503 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF503


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN503_HUMAN, Q96F45: Nucleus (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    mitochondrion1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF503           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF503
    Interactions:

        Search GeneGlobe Interaction Network for ZNF503

    Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--
    GO:0008285negative regulation of cell proliferation IDA--
    GO:0010629negative regulation of gene expression IDA--
    GO:0061351neural precursor cell proliferation IEA--

    Find genes that share ontologies with ZNF503           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF503 (ZN503)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF503 gene: 
    NM_032772.4  

    Unigene Cluster for ZNF503:

    Zinc finger protein 503
    Hs.195710  [show with all ESTs]
    Unigene Representative Sequence: NM_032772
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000372524(uc001jxg.3) ENST00000535216
    miRNA
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    Block miRNA regulation of human, mouse, rat ZNF503 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZNF503 (see all 39):
    hsa-miR-548j hsa-miR-142-5p hsa-miR-374c hsa-miR-124 hsa-miR-4325 hsa-miR-3613-3p hsa-miR-506 hsa-miR-548d-5p
    SwitchGear 3'UTR luciferase reporter plasmidZNF503 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZNF503
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    GenScript: all cDNA clones in your preferred vector: ZNF503 (NM_032772)
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    OriGene qPCR primer pairs and template standards for ZNF503
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ZNF503
      QuantiTect SYBR Green Assays in human, mouse, rat ZNF503
      QuantiFast Probe-based Assays in human, mouse, rat ZNF503

    Additional mRNA sequence: 

    AK092897.1 AK125693.1 AK127647.1 AK225851.1 AK290311.1 BC007494.2 BC011625.2 BC013011.2 
    BC021165.2 

    10 DOTS entries:

    DT.426680  DT.40228435  DT.121248193  DT.40249070  DT.99993454  DT.121248184  DT.91806245  DT.92420612 
    DT.95352641  DT.314585 

    Selected AceView cDNA sequences (see all 111):

    AK092897 BM272508 AI928396 BM893951 CA454984 CK904943 BF791376 BQ185212 
    BM967294 AA287149 BM312777 BM055400 BG285263 NM_032772 AI261437 AK127647 
    BU542610 BX105802 BC021165 BQ574961 BC011625 BG751515 BC007494 BC013011 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF503 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CACATCCCCA
    ZNF503 Expression
    About this image


    ZNF503 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 14) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 4 entries
             Metencephalon
             Floor plate-like cells
     
     Eye (Sensory Organs)    fully expand to see all 2 entries
             GABAergic Amacrine Cells Inner Nuclear Layer
     
     Neurons
             GABAergic Amacrine Cells Inner Nuclear Layer
     
     Brain (Nervous System)    fully expand to see all 2 entries
             Cerebellum
     
     Neural Crest (Gastrulation Derivatives)
             PureStem 4D20.8, NCr-fac Progenitor
    ZNF503 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF503 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.195710
        Custom PCR Arrays for ZNF503
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF503 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp5031 , 5 zinc finger protein 5031, 5 89.35(n)1
    96.12(a)1
      14 (12.00 cM)5
    2188201  NM_145459.31  NP_663434.21 
     219839625 
    chicken
    (Gallus gallus)
    Aves ZNF5031 zinc finger protein 503 78.42(n)
    78.8(a)
      770136  XM_001233456.3  XP_001233457.2 
    lizard
    (Anolis carolinensis)
    Reptilia ZNF5036
    zinc finger protein 503
    69(a)
    1 ↔ 1
    GL343196.1(3191590-3197857)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.188102 Transcribed sequence with weak similarity to protein more 74.89(n)    AL851315.2 
    zebrafish
    (Danio rerio)
    Actinopterygii noz22 nocA related zinc finger 2 76.8(n)   324913  AY371081.1 


    ENSEMBL Gene Tree for ZNF503 (if available)
    TreeFam Gene Tree for ZNF503 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF503 gene
    ZNF7032  
    1 SIMAP similar gene for ZNF503 using alignment to 1 protein entry:     ZN503_HUMAN:
    ZNF703

    Find genes that share paralogs with ZNF503           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF503 (see all 65)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1840307711,2
    --77157154(+) CCCAGC/TGCGCT 1 -- int10--------
    rs1112402631,2
    C--77157183(+) CCCGGC/TCCAGG 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs1876040321,2
    C--77157237(+) AACCCA/CAATGC 1 -- int10--------
    rs1925557511,2
    --77157433(+) CTGGTA/GGCCCC 1 -- int10--------
    rs1405730781,2
    --77157454(+) TTTGCC/TTCCCA 1 -- int10--------
    rs1840511801,2
    C--77157466(+) AAAATC/TACAAC 1 -- int10--------
    rs107626661,2
    C,F,A,H--77157489(+) AATTCG/AGCCAC 1 -- int124Minor allele frequency- A:0.22NS EA NA WA CSA 2250
    rs1128251411,2
    C,F--77157544(+) CGGCCG/CAAACT 1 -- int11Minor allele frequency- C:0.50CSA 2
    rs115959411,2
    C,F,H--77157628(+) AATTTT/GAATCT 1 -- ut317Minor allele frequency- G:0.01NS EA NA 704
    rs1915959181,2
    --77157647(+) ATACAC/TTGTCT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF503 (77157588 - 77161664 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for ZNF503:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv895730CNV Loss21882294
    dgv163n67CNV Gain20364138

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF503
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 613902    OMIM disorders: --


    Find genes that share disorders with ZNF503           About GenesLikeMe


    Export disorders for ZNF503 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF503 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF503)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    3. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    5. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    6. Identification of a developmentally regulated striatum-enriched zinc-finger gene, Nolz-1, in the mammalian brain. (PubMed id 14983057)1 Chang C.W....Liu F.C. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    8. Gene expression profile of human bone marrow stromal cells: high-throughput expressed sequence tag sequencing analysis. (PubMed id 11827452)1 Jia L....Francomano C.A. (Genomics 2002)
    9. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)1 Maruyama K. and Sugano S. (Gene 1994)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 84858 HGNC: 23589 AceView: ZNF503 Ensembl:ENSG00000165655 euGenes: HUgn84858
    ECgene: ZNF503 H-InvDB: ZNF503

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for ZNF503 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF503 gene:
    Search GeneIP for patents involving ZNF503

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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