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Aliases for ZNF490 Gene

Aliases for ZNF490 Gene

  • Zinc Finger Protein 490 2 3 5
  • KIAA1198 4

External Ids for ZNF490 Gene

Previous GeneCards Identifiers for ZNF490 Gene

  • GC19M012547
  • GC19M012687
  • GC19M012259

Summaries for ZNF490 Gene

GeneCards Summary for ZNF490 Gene

ZNF490 (Zinc Finger Protein 490) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF14.

UniProtKB/Swiss-Prot for ZNF490 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF490 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF490 Gene

Genomics for ZNF490 Gene

Regulatory Elements for ZNF490 Gene

Enhancers for ZNF490 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H012983 2 FANTOM5 Ensembl ENCODE dbSUPER 20 -344.7 -344705 3.2 HDGF PKNOX1 FOXA2 MLX SIN3A ARID4B DMAP1 ZNF2 ZNF766 ZNF143 ZNF136 ZNF442 CCDC130 ZNF564 ZNF625 ZNF844 ZNF799 WDR83OS MRI1 ZNF44
GH19H012609 1.7 FANTOM5 Ensembl ENCODE 23.4 +27.7 27738 4.8 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF136 ZNF44 ZNF20 ZNF700 ZNF799 ZNF442 ZNF844 ZNF564 TRMT1 WDR83OS
GH19H012293 1.4 FANTOM5 ENCODE 22.6 +345.6 345582 2.9 PKNOX1 MLX ARID4B SIN3A YY1 ZNF766 CBX5 ZNF143 FOS SP3 ZNF44 ZNF136 ZNF20 ZNF763 ZNF700 ZNF878 TRMT1 ZNF490 TRIR ZNF564
GH19H013148 2.1 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -513.6 -513597 10.2 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 ZFP41 MEF2D ZNF610 ZNF136 CCDC130 TRMT1 ZNF709 ZNF564 ZNF791 ZNF44 ZNF442 TRIR ZNF625
GH19H012664 1.4 ENCODE dbSUPER 17.2 -27.6 -27565 6.6 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 WDR83OS ZNF490 MTCO1P27 ZNF20 ZNF44 ENSG00000267735 ZNF136 ZNF700 TRIR ZNF799
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF490 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF490 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107279 -202 201 ELF3 HDGF TBP RB1 ARID4B RAD21 CBX5 ZNF143 ATF7 RUNX3

Genomic Locations for ZNF490 Gene

Genomic Locations for ZNF490 Gene
63,993 bases
Minus strand

Genomic View for ZNF490 Gene

Genes around ZNF490 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF490 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF490 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF490 Gene

Proteins for ZNF490 Gene

  • Protein details for ZNF490 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 490
    Protein Accession:

    Protein attributes for ZNF490 Gene

    529 amino acids
    Molecular mass:
    61340 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA86512.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF490 Gene

Post-translational modifications for ZNF490 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF490 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF490 Gene

Domains & Families for ZNF490 Gene

Gene Families for ZNF490 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF490 Gene

Suggested Antigen Peptide Sequences for ZNF490 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF490: view

Function for ZNF490 Gene

Molecular function for ZNF490 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF490 Gene

Gene Ontology (GO) - Molecular Function for ZNF490 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0005515 protein binding IPI 21516116
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF490: view
genes like me logo Genes that share phenotypes with ZNF490: view

miRNA for ZNF490 Gene

miRTarBase miRNAs that target ZNF490

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF490 Gene

Localization for ZNF490 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF490 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF490 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF490 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF490: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZNF490 Gene

Pathways & Interactions for ZNF490 Gene

SuperPathways for ZNF490 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF490: view

Pathways by source for ZNF490 Gene

2 Reactome pathways for ZNF490 Gene

Gene Ontology (GO) - Biological Process for ZNF490 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA,IEA --
genes like me logo Genes that share ontologies with ZNF490: view

No data available for SIGNOR curated interactions for ZNF490 Gene

Drugs & Compounds for ZNF490 Gene

No Compound Related Data Available

Transcripts for ZNF490 Gene

mRNA/cDNA for ZNF490 Gene

Unigene Clusters for ZNF490 Gene

Zinc finger protein 490:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF490 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: - -
SP2: -

Relevant External Links for ZNF490 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF490 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF490 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF490 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF490 Gene:


SOURCE GeneReport for Unigene cluster for ZNF490 Gene:


Evidence on tissue expression from TISSUES for ZNF490 Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with ZNF490: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF490 Gene

Orthologs for ZNF490 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF490 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZNF490 33 34
  • 99.81 (n)
(Bos Taurus)
Mammalia -- 34
  • 52 (a)
Species where no ortholog for ZNF490 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF490 Gene

Gene Tree for ZNF490 (if available)
Gene Tree for ZNF490 (if available)

Paralogs for ZNF490 Gene

(449) SIMAP similar genes for ZNF490 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF490: view

Variants for ZNF490 Gene

Sequence variations from dbSNP and Humsavar for ZNF490 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000000748 -- 12,579,952(+) AAATT(A/T)CAAAA utr-variant-3-prime
rs1000166965 -- 12,601,434(+) TCACC(C/T)AGGCT intron-variant
rs1000217519 -- 12,605,046(+) TACTC(A/G)GGAGG intron-variant
rs1000275387 -- 12,601,767(+) GCGGG(C/T)GGATC intron-variant
rs1000362989 -- 12,611,378(+) AGTCC(C/T)TTCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF490 Gene

Variant ID Type Subtype PubMed ID
nsv828443 CNV loss 20364138
nsv828441 CNV loss 20364138
nsv821459 CNV deletion 20802225
nsv820210 CNV gain 19587683
nsv578634 CNV loss 21841781
nsv514889 CNV loss 21397061
nsv512563 CNV loss 21212237
nsv510755 CNV deletion 20534489
nsv498893 CNV loss 21111241
nsv2419 CNV deletion 18451855
nsv1160586 CNV duplication 26073780
nsv1151821 CNV deletion 26484159
nsv1125434 CNV deletion 24896259
nsv1071146 CNV deletion 25765185
esv997496 CNV deletion 20482838
esv996849 CNV gain 20482838
esv3643709 CNV loss 21293372
esv3583253 CNV loss 25503493
esv3556048 CNV deletion 23714750
esv2657078 CNV deletion 23128226
esv23136 CNV gain+loss 19812545
dgv79n73 CNV deletion 24416366
dgv6272n54 CNV gain+loss 21841781
dgv6271n54 CNV gain 21841781
dgv6270n54 CNV gain 21841781
dgv54n16 CNV deletion 17901297
dgv3437n100 CNV gain 25217958
dgv3436n100 CNV gain 25217958

Variation tolerance for ZNF490 Gene

Residual Variation Intolerance Score: 50% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.27; 25.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF490 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF490 Gene

Disorders for ZNF490 Gene

Relevant External Links for ZNF490

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ZNF490 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF490 Gene

Publications for ZNF490 Gene

  1. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y … Zhang H (Genetic epidemiology 2011) 3 45 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10574462) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1999) 3 4 60
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60

Products for ZNF490 Gene

Sources for ZNF490 Gene

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