ZNF487P Gene
pseudogene GIFtS: 26
GCID: GC10P043935
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zinc finger protein 487, pseudogene(Previous names: KRAB domain only 1, zinc finger protein 487 )
(Previous symbols: KRBO1, ZNF487)
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Aliases
for ZNF487P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Finger Protein 487, Pseudogene1 2 | | KRBO11 2 3 | | ZNF4871 2 3 | | KRAB Domain Only 11 | | Zinc Finger Protein 4871 | | KRAB Domain Only Protein 13 |
Export aliases for ZNF487P gene to outside databasesPrevious GC identifer: GC10P040460 |
Summaries
for ZNF487P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: ZN487_HUMAN, B1APH4Function: May be involved in transcriptional regulation (By similarity)
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Genomic Views
for ZNF487P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000010.10 NC_018921.1 NT_033985.7
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ZNF487P
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZNF487P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF487P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 10q11.21 Ensembl cytogenetic band: 10q11.21 HGNC cytogenetic band: 10q11.21ZNF487P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P043935: view genomic region
(about GC identifiers)
Start:
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43,932,282 bp from pter |
End:
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43,991,517 bp from pter |
Size:
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59,236 bases |
Orientation:
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plus strand |
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Proteins
for ZNF487P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZN487_HUMAN, B1APH4 (See
protein sequence)Recommended Name: Putative zinc finger protein 487 Size: 448 amino acids; 51624 Da
Subcellular location: Nucleus (Probable)
Caution: Could be the product of a pseudogene
Sequence caution: Sequence=CAI15018.3; Type=Erroneous gene model prediction; Sequence=CAO03512.1; Type=Erroneous genemodel prediction;
Secondary accessions: B1APH5Explore the universe of human proteins at neXtProt for ZNF487P: NX_B1APH4
ZNF487P Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000314093 ENSP00000413773 ENSP00000395343 ENSP00000411348 ENSP00000395135 ENSP00000388421 ENSP00000392335
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
ZNF487P for ontologies About GeneDecksing
ZNF487P Antibody Products:
Assay Products for ZNF487P: |
Protein
Domains /
Families
for ZNF487P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZNF487P for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry B1APH4ProtoNet protein and cluster: B1APH4 UniProtKB/Swiss-Prot: ZN487_HUMAN, B1APH4Similarity: Belongs to the krueppel C2H2-type zinc-finger protein familySimilarity: Contains 3 C2H2-type zinc fingersSimilarity: Contains 2 KRAB domains |
Function
for ZNF487P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Function Summary:
UniProtKB/Swiss-Prot: ZN487_HUMAN, B1APH4Function: May be involved in transcriptional regulation (By similarity)
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF487P |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
ZNF487P for ontologies About GeneDecksing
|
Pathways & Interactions
for ZNF487P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF487P
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- |
ZNF487P for ontologies About GeneDecksing
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Drugs & Compounds
for ZNF487P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZNF487P
Search CenterWatch for drugs/clinical trials and news about ZNF487P 
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Transcripts
for ZNF487P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Cluster for ZNF487P: Zinc finger protein 487, pseudogene Hs.719657 [show with all ESTs]Unigene Representative Sequence: AK3024428 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000315429 ENST00000455398 ENST00000456416 ENST00000442349 ENST00000490208
ENST00000451167 ENST00000431662 ENST00000437590(uc010qfb.1)
Additional cDNA sequence: AK302442.1 NR_026693.1 1 DOTS entry: DT.92043112
GeneLoc Exon Structure
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Expression
for ZNF487P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZNF487P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See ZNF487P Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.719657
SABiosciences Custom PCR Arrays for ZNF487P
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ZNF487P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNF487P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF487P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF487P |
Orthologs
for ZNF487P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for ZNF487P (if available)
TreeFam Gene Tree for ZNF487P (if available) |
Paralogs
for ZNF487P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZNF487P gene
- ZNF3342 ENSG000002673602 ZNF7822 ZNF122 ZNF5102 ZNF5672 ZNF33A2 ZNF7172
- RBAK2 ZNF37A2 ZNF2482 ZNF33B2 ZNF3822
18/148 SIMAP similar genes for ZNF487P using alignment to 5 protein entries: ZN487_HUMAN (see all proteins)
(see all similar genes):ZNF624 ZNF776 ZNF81 ZNF420 ZNF510 ZNF718
ZNF669 ZNF28 ZNF66 ZNF561 POM121C ZNF250
ZNF300P1 ZNF506 ZNF169 ZNF823 ZNF33B MGC12518
ZNF487P for paralogs About GeneDecksing
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Genomic Variants
for ZNF487P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 10 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for ZNF487P (43932282 - 43991517 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZNF487P: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for ZNF487P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for ZNF487P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed article for ZNF487P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF487P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)2 Deloukas P.... Rogers J. (2004)
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External Searches for ZNF487P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing ZNF487P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing ZNF487P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZNF487P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZNF487P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for ZNF487P gene:
Search GeneIP for patents involving ZNF487P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZNF487P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZNF487P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNF487P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF487P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZNF487P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF487P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNF487P |
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| | | | Search Tocris compounds for ZNF487P |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF487P |
|  |  |  | | | | Search ThermoFisher Antibodies for ZNF487P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ZNF487P |
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