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Aliases for ZNF486 Gene

Aliases for ZNF486 Gene

  • Zinc Finger Protein 486 2 3
  • KRAB Domain Only Protein 2 3 4
  • KRAB Domain Only 2 2 3
  • KRBO2 3 4
  • KRAB Box Only Protein 2 3

External Ids for ZNF486 Gene

Previous HGNC Symbols for ZNF486 Gene

  • KRBO2

Previous GeneCards Identifiers for ZNF486 Gene

  • GC19P020139
  • GC19P019976
  • GC19P020278

Summaries for ZNF486 Gene

GeneCards Summary for ZNF486 Gene

ZNF486 (Zinc Finger Protein 486) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF253.

UniProtKB/Swiss-Prot for ZNF486 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF486 Gene

Genomics for ZNF486 Gene

Regulatory Elements for ZNF486 Gene

Genomic Location for ZNF486 Gene

Start:
20,167,214 bp from pter
End:
20,200,490 bp from pter
Size:
33,277 bases
Orientation:
Plus strand

Genomic View for ZNF486 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF486 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF486 Gene

Proteins for ZNF486 Gene

  • Protein details for ZNF486 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96H40-ZN486_HUMAN
    Recommended name:
    Zinc finger protein 486
    Protein Accession:
    Q96H40
    Secondary Accessions:
    • Q0VG00

    Protein attributes for ZNF486 Gene

    Size:
    463 amino acids
    Molecular mass:
    53631 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH08936.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAH08936.2; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305};

neXtProt entry for ZNF486 Gene

Proteomics data for ZNF486 Gene at MOPED

Post-translational modifications for ZNF486 Gene

  • Ubiquitination at Lys217 and Lys379
  • Modification sites at PhosphoSitePlus

Other Protein References for ZNF486 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF486 Gene

Domains for ZNF486 Gene

Gene Families for ZNF486 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF486 Gene

Suggested Antigen Peptide Sequences for ZNF486 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96H40

UniProtKB/Swiss-Prot:

ZN486_HUMAN :
  • Q96H40
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 10 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF486: view

Function for ZNF486 Gene

Molecular function for ZNF486 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF486 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF486: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF486 Gene

Localization for ZNF486 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF486 Gene

Gene Ontology (GO) - Cellular Components for ZNF486 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with ZNF486: view

No data available for Subcellular locations from COMPARTMENTS for ZNF486 Gene

Pathways for ZNF486 Gene

SuperPathways for ZNF486 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF486: view

Pathways by source for ZNF486 Gene

2 Reactome pathways for ZNF486 Gene

Interacting Proteins for ZNF486 Gene

Gene Ontology (GO) - Biological Process for ZNF486 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZNF486: view

Transcripts for ZNF486 Gene

mRNA/cDNA for ZNF486 Gene

(4) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF486 Gene

Zinc finger protein 486:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF486 Gene

No ASD Table

Relevant External Links for ZNF486 Gene

GeneLoc Exon Structure for
ZNF486
ECgene alternative splicing isoforms for
ZNF486

Expression for ZNF486 Gene

mRNA expression in normal human tissues for ZNF486 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF486 Gene

This gene is overexpressed in Thyroid (8.4).

SOURCE GeneReport for Unigene cluster for ZNF486 Gene Hs.590991

genes like me logo Genes that share expressions with ZNF486: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF486 Gene

Orthologs for ZNF486 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF486 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF486 36
  • 91 (a)
OneToOne
ZNF728 35
  • 99.14 (n)
  • 98.27 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 43 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 31 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp386 36
  • 31 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 30 (a)
ManyToMany
-- 36
  • 44 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 42 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
-- 36
  • 33 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
Species with no ortholog for ZNF486:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF486 Gene

ENSEMBL:
Gene Tree for ZNF486 (if available)
TreeFam:
Gene Tree for ZNF486 (if available)

Paralogs for ZNF486 Gene

Selected SIMAP similar genes for ZNF486 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF486: view

Variants for ZNF486 Gene

Sequence variations from dbSNP and Humsavar for ZNF486 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs836890 -- 20,168,377(+) Gggcc(A/G)ggcgc intron-variant
rs836891 -- 20,173,209(+) tttaa(A/G)tcttt intron-variant
rs836892 -- 20,173,323(+) gaatc(C/T)ttccc intron-variant
rs836893 -- 20,173,435(+) TTTTA(C/T)ATAAC intron-variant
rs836894 -- 20,174,349(+) gacaa(C/G)ctgca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF486 Gene

Variant ID Type Subtype PubMed ID
nsv519535 CNV Gain 19592680
esv2718296 CNV Deletion 23290073
dgv550e201 CNV Deletion 23290073
dgv3792n71 CNV Gain 21882294
nsv911320 CNV Gain 21882294
dgv630e199 CNV Deletion 23128226
nsv911321 CNV Gain 21882294
dgv3793n71 CNV Gain 21882294
dgv3794n71 CNV Loss 21882294
dgv1061e1 CNV Complex 17122850
esv34357 CNV Gain 17911159
nsv817820 CNV Gain 17921354
nsv911327 CNV Loss 21882294
nsv911328 CNV Gain 21882294
essv24619 CNV CNV 17122850
nsv520325 CNV Gain 19592680
esv2718305 CNV Deletion 23290073
nsv911329 CNV Loss 21882294
esv2663395 CNV Deletion 23128226

Relevant External Links for ZNF486 Gene

HapMap Linkage Disequilibrium report
ZNF486

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF486 Gene

Disorders for ZNF486 Gene

No disorders were found for ZNF486 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF486 Gene

Publications for ZNF486 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 3
  3. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZNF486 Gene

Sources for ZNF486 Gene

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