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Aliases for ZNF485 Gene

Aliases for ZNF485 Gene

  • Zinc Finger Protein 485 2 3 5

External Ids for ZNF485 Gene

Previous GeneCards Identifiers for ZNF485 Gene

  • GC10P043256
  • GC10P043421
  • GC10P044101
  • GC10P040628

Summaries for ZNF485 Gene

GeneCards Summary for ZNF485 Gene

ZNF485 (Zinc Finger Protein 485) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF879.

UniProtKB/Swiss-Prot for ZNF485 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF485 Gene

Genomics for ZNF485 Gene

Regulatory Elements for ZNF485 Gene

Enhancers for ZNF485 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G043605 1 ENCODE 0.7 +0.3 255 1.7 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ETS1 GLIS2 CBX5 ZNF32 ZNF485 PIR33135
GH10G043623 0.9 Ensembl ENCODE 0.4 +17.1 17095 0.6 IRF2 MAFG ELF4 ZBTB40 ZNF507 FOXM1 ZNF318 IRF1 NFE2 MYC ENSG00000228426 PIR33135 ZNF485
GH10G043613 0.4 ENCODE 0.4 +7.4 7422 1.3 FOS ZNF32 ZNF32-AS2 ZNF239 ENSG00000229116 ZNF485 PIR33135
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF485 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF485 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027241 194 1200 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ETS1 GLIS2 CBX5

Genomic Location for ZNF485 Gene

Chromosome:
10
Start:
43,606,407 bp from pter
End:
43,617,904 bp from pter
Size:
11,498 bases
Orientation:
Plus strand

Genomic View for ZNF485 Gene

Genes around ZNF485 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF485 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF485 Gene

Proteins for ZNF485 Gene

  • Protein details for ZNF485 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCK3-ZN485_HUMAN
    Recommended name:
    Zinc finger protein 485
    Protein Accession:
    Q8NCK3
    Secondary Accessions:
    • B4DSE6
    • Q96CL0

    Protein attributes for ZNF485 Gene

    Size:
    441 amino acids
    Molecular mass:
    50280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14161.1; Type=Frameshift; Positions=3; Evidence={ECO:0000305}; Sequence=CAH73487.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF485 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF485 Gene

Post-translational modifications for ZNF485 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF485 Gene

No data available for DME Specific Peptides for ZNF485 Gene

Domains & Families for ZNF485 Gene

Gene Families for ZNF485 Gene

Protein Domains for ZNF485 Gene

Suggested Antigen Peptide Sequences for ZNF485 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NCK3

UniProtKB/Swiss-Prot:

ZN485_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF485: view

Function for ZNF485 Gene

Molecular function for ZNF485 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF485: view
genes like me logo Genes that share phenotypes with ZNF485: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF485 Gene

Localization for ZNF485 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF485 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF485 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF485: view

Pathways & Interactions for ZNF485 Gene

SuperPathways for ZNF485 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF485: view

Pathways by source for ZNF485 Gene

2 Reactome pathways for ZNF485 Gene

Interacting Proteins for ZNF485 Gene

Gene Ontology (GO) - Biological Process for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF485: view

No data available for SIGNOR curated interactions for ZNF485 Gene

Drugs & Compounds for ZNF485 Gene

No Compound Related Data Available

Transcripts for ZNF485 Gene

Unigene Clusters for ZNF485 Gene

Zinc finger protein 485:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF485 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZNF485 Gene

GeneLoc Exon Structure for
ZNF485
ECgene alternative splicing isoforms for
ZNF485

Expression for ZNF485 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF485 Gene

Protein differential expression in normal tissues from HIPED for ZNF485 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF485 Gene



Protein tissue co-expression partners for ZNF485 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF485 Gene:

ZNF485

SOURCE GeneReport for Unigene cluster for ZNF485 Gene:

Hs.147440

Evidence on tissue expression from TISSUES for ZNF485 Gene

  • Nervous system(4.3)
  • Skin(4.1)
genes like me logo Genes that share expression patterns with ZNF485: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF485 Gene

Orthologs for ZNF485 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF485 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF485 34 35
  • 99.7 (n)
dog
(Canis familiaris)
Mammalia ZNF485 34 35
  • 88.31 (n)
Species where no ortholog for ZNF485 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF485 Gene

ENSEMBL:
Gene Tree for ZNF485 (if available)
TreeFam:
Gene Tree for ZNF485 (if available)

Paralogs for ZNF485 Gene

(553) SIMAP similar genes for ZNF485 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for ZNF485 Gene

genes like me logo Genes that share paralogs with ZNF485: view

Variants for ZNF485 Gene

Sequence variations from dbSNP and Humsavar for ZNF485 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000095131 -- 43,615,564(+) GCCTG(A/C/G)CTAGT intron-variant
rs1000117163 -- 43,608,571(+) CCTCC(C/T)TCAGG intron-variant, utr-variant-5-prime
rs1000182789 -- 43,610,126(+) AACAC(A/T)TTGTT intron-variant
rs1000279872 -- 43,612,433(+) CATGA(C/T)AGCTG intron-variant
rs1000419870 -- 43,618,465(+) CGGAG(C/T)TTGCA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF485 Gene

Variant ID Type Subtype PubMed ID
nsv522992 CNV loss 19592680
nsv947897 CNV duplication 23825009

Variation tolerance for ZNF485 Gene

Residual Variation Intolerance Score: 36.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.74; 66.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF485 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF485

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF485 Gene

Disorders for ZNF485 Gene

Relevant External Links for ZNF485

Genetic Association Database (GAD)
ZNF485
Human Genome Epidemiology (HuGE) Navigator
ZNF485
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF485

No disorders were found for ZNF485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF485 Gene

Publications for ZNF485 Gene

  1. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF485 Gene

Sources for ZNF485 Gene

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