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Aliases for ZNF479 Gene

Aliases for ZNF479 Gene

  • Zinc Finger Protein 479 2 3
  • Zinc Finger Protein Kr19 3 4
  • HKr19 3 4
  • KRAB Zinc Finger Protein KR19 3
  • KR19 3

External Ids for ZNF479 Gene

Previous GeneCards Identifiers for ZNF479 Gene

  • GC07M056965
  • GC07M056449
  • GC07M056998
  • GC07Mh57320
  • GC07M057191

Summaries for ZNF479 Gene

GeneCards Summary for ZNF479 Gene

ZNF479 (Zinc Finger Protein 479) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF253.

UniProtKB/Swiss-Prot for ZNF479 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF479 Gene

Genomics for ZNF479 Gene

Regulatory Elements for ZNF479 Gene

Genomic Location for ZNF479 Gene

Start:
57,119,614 bp from pter
End:
57,139,864 bp from pter
Size:
20,251 bases
Orientation:
Minus strand

Genomic View for ZNF479 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF479 Gene

Proteins for ZNF479 Gene

  • Protein details for ZNF479 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JC4-ZN479_HUMAN
    Recommended name:
    Zinc finger protein 479
    Protein Accession:
    Q96JC4
    Secondary Accessions:

    Protein attributes for ZNF479 Gene

    Size:
    524 amino acids
    Molecular mass:
    60598 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF479 Gene

Proteomics data for ZNF479 Gene at MOPED

Post-translational modifications for ZNF479 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF479 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF479 Gene

Domains for ZNF479 Gene

Gene Families for ZNF479 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF479 Gene

Suggested Antigen Peptide Sequences for ZNF479 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96JC4

UniProtKB/Swiss-Prot:

ZN479_HUMAN :
  • Q96JC4
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 12 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF479: view

Function for ZNF479 Gene

Molecular function for ZNF479 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF479 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF479: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF479

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF479 Gene

Localization for ZNF479 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF479 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF479 Gene COMPARTMENTS Subcellular localization image for ZNF479 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF479 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF479: view

Pathways for ZNF479 Gene

SuperPathways for ZNF479 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF479: view

Pathways by source for ZNF479 Gene

2 Reactome pathways for ZNF479 Gene

Interacting Proteins for ZNF479 Gene

Gene Ontology (GO) - Biological Process for ZNF479 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF479: view

Transcripts for ZNF479 Gene

mRNA/cDNA for ZNF479 Gene

(16) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF479 Gene

Zinc finger protein 479:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF479

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZNF479
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF479 Gene

No ASD Table

Relevant External Links for ZNF479 Gene

GeneLoc Exon Structure for
ZNF479
ECgene alternative splicing isoforms for
ZNF479

Expression for ZNF479 Gene

mRNA expression in normal human tissues for ZNF479 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF479 Gene

This gene is overexpressed in Testis (52.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF479 Gene

SOURCE GeneReport for Unigene cluster for ZNF479 Gene Hs.616660

mRNA Expression by UniProt/SwissProt for ZNF479 Gene

Q96JC4-ZN479_HUMAN
Tissue specificity: Expressed primarily in testis and fetal tissues.
genes like me logo Genes that share expressions with ZNF479: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ZNF479 Gene

Orthologs for ZNF479 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF479 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100610454 35
  • 98.69 (n)
  • 97.73 (a)
ZNF479 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 52 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 37 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp456 36
  • 45 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 37 (a)
ManyToMany
-- 36
  • 51 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 51 (a)
ManyToMany
-- 36
  • 32 (a)
ManyToMany
-- 36
  • 39 (a)
ManyToMany
-- 36
  • 38 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 30 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
Species with no ortholog for ZNF479:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF479 Gene

ENSEMBL:
Gene Tree for ZNF479 (if available)
TreeFam:
Gene Tree for ZNF479 (if available)

Paralogs for ZNF479 Gene

Selected SIMAP similar genes for ZNF479 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZNF479 Gene

genes like me logo Genes that share paralogs with ZNF479: view

Variants for ZNF479 Gene

Sequence variations from dbSNP and Humsavar for ZNF479 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1985955 -- 57,129,479(+) ATACT(A/T)CTGCT intron-variant
rs3885715 -- 57,141,744(-) cctag(C/T)actta upstream-variant-2KB
rs3889851 -- 57,132,199(-) TTTCT(C/T)GCAGT intron-variant
rs3889852 -- 57,132,102(-) cctgg(C/G)accct intron-variant
rs4283994 -- 57,131,568(+) AAAAA(A/T)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF479 Gene

Variant ID Type Subtype PubMed ID
esv2752160 CNV Gain 17911159
esv2734468 CNV Deletion 23290073
nsv888071 CNV Gain 21882294
esv2734476 CNV Deletion 23290073

Relevant External Links for ZNF479 Gene

HapMap Linkage Disequilibrium report
ZNF479

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF479 Gene

Disorders for ZNF479 Gene

Relevant External Links for ZNF479

Human Genome Epidemiology (HuGE) Navigator
ZNF479
genes like me logo Genes that share disorders with ZNF479: view

No data available for UniProtKB/Swiss-Prot for ZNF479 Gene

Publications for ZNF479 Gene

  1. Molecular cloning and preliminary functional analysis of two novel human KRAB zinc finger proteins, HKr18 and HKr19. (PMID: 11410164) Mark C. … Hellman L. (DNA Cell Biol. 2001) 2 3 4
  2. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3

Products for ZNF479 Gene

Sources for ZNF479 Gene

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