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Aliases for ZNF469 Gene

Aliases for ZNF469 Gene

  • Zinc Finger Protein 469 2 3 5
  • KIAA1858 4
  • BCS1 3
  • BCS 3

External Ids for ZNF469 Gene

Previous GeneCards Identifiers for ZNF469 Gene

  • GC16P087021
  • GC16P088493
  • GC16P074187

Summaries for ZNF469 Gene

Entrez Gene Summary for ZNF469 Gene

  • This gene encodes a zinc-finger protein. Low-percent homology to certain collagens suggests that it may function as a transcription factor or extra-nuclear regulator factor for the synthesis or organization of collagen fibers. Mutations in this gene cause brittle cornea syndrome. [provided by RefSeq, Jul 2008]

GeneCards Summary for ZNF469 Gene

ZNF469 (Zinc Finger Protein 469) is a Protein Coding gene. Diseases associated with ZNF469 include Brittle Cornea Syndrome 1 and Keratoconus 1.

UniProtKB/Swiss-Prot for ZNF469 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF469 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF469 Gene

Genomics for ZNF469 Gene

Regulatory Elements for ZNF469 Gene

Enhancers for ZNF469 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H088442 1.5 Ensembl ENCODE dbSUPER 12 +210.1 210128 2 HDGF ARID4B SIN3A ZNF2 ZBTB7B GLIS2 ZNF143 ZNF207 RUNX3 DEK ZC3H18 KLHDC4 GALNS ENSG00000259877 LOC100289580 ZNF469 TRAPPC2L CTU2 BANP ENSG00000260121
GH16H088524 1.5 Ensembl ENCODE dbSUPER 11.2 +293.4 293429 4 HDGF ATF1 ARID4B ZNF121 GLIS2 GATA2 ZNF143 ATF7 REST MIER2 ZC3H18 LOC100128882 ANKRD11 ZFPM1 ENSG00000268218 LINC00304 ZNF469 ENSG00000259877 BANP LOC101927863
GH16H088315 1.4 Ensembl ENCODE dbSUPER 11.8 +82.9 82855 1.4 ELF3 ATF1 DMAP1 ZBTB40 RAD21 RARA FOS MXD4 ELF1 NR2F2 ZNF469 GC16P088248 ZFPM1
GH16H088381 1.1 Ensembl ENCODE 12.3 +150.2 150177 3.6 RING1 SIX4 CTCF ESRRA NFIB MAX ZMYM3 BMI1 RAD21 ZIC2 ENSG00000259877 ZC3H18 LOC100128882 ZNF469 CTU2 ENSG00000268218 ZCCHC14 ZFPM1 GC16P088248
GH16H088386 1 Ensembl ENCODE 12.3 +154.9 154862 3.7 ELF3 GTF2F1 FOXA2 SAP130 SIN3A TEAD3 CTBP1 POLR2A SMARCE1 RFX1 ZNF469 ZFPM1 GC16P088248
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF469 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF469 Gene

Genomic Locations for ZNF469 Gene
207,743 bases
Plus strand

Genomic View for ZNF469 Gene

Genes around ZNF469 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF469 Gene

Proteins for ZNF469 Gene

  • Protein details for ZNF469 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 469
    Protein Accession:

    Protein attributes for ZNF469 Gene

    3925 amino acids
    Molecular mass:
    410202 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF469 Gene

Post-translational modifications for ZNF469 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF469 Gene

No data available for DME Specific Peptides for ZNF469 Gene

Domains & Families for ZNF469 Gene

Gene Families for ZNF469 Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF469 Gene


Suggested Antigen Peptide Sequences for ZNF469 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF469: view

Function for ZNF469 Gene

Molecular function for ZNF469 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF469 Gene

Gene Ontology (GO) - Molecular Function for ZNF469 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF469: view

Phenotypes for ZNF469 Gene

genes like me logo Genes that share phenotypes with ZNF469: view

Human Phenotype Ontology for ZNF469 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF469 Gene

Localization for ZNF469 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF469 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF469 gene
Compartment Confidence
nucleus 5

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ZNF469 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF469: view

Pathways & Interactions for ZNF469 Gene

SuperPathways for ZNF469 Gene

No Data Available

Interacting Proteins for ZNF469 Gene

Gene Ontology (GO) - Biological Process for ZNF469 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF469: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF469 Gene

Drugs & Compounds for ZNF469 Gene

No Compound Related Data Available

Transcripts for ZNF469 Gene

mRNA/cDNA for ZNF469 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF469 Gene

Zinc finger protein 469:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF469 Gene

No ASD Table

Relevant External Links for ZNF469 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF469 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF469 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZNF469 Gene

This gene is overexpressed in Serum (18.2), Spinal cord (11.0), Stomach (9.4), Heart (8.3), and Salivary gland (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZNF469 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF469 Gene:


SOURCE GeneReport for Unigene cluster for ZNF469 Gene:


mRNA Expression by UniProt/SwissProt for ZNF469 Gene:

Tissue specificity: Detected in cornea, sclera, skin fibroblasts and striated muscle.

Evidence on tissue expression from TISSUES for ZNF469 Gene

  • Nervous system(4)
  • Eye(2.2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF469 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
  • cardiovascular
  • integumentary
  • nervous
  • respiratory
  • skeletal muscle
  • skeleton
Head and neck:
  • brain
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • head
  • jaw
  • mandible
  • maxilla
  • middle ear
  • mouth
  • neck
  • outer ear
  • skull
  • tooth
  • chest wall
  • clavicle
  • heart
  • heart valve
  • lung
  • rib
  • rib cage
  • scapula
  • sternum
  • pelvis
  • ankle
  • arm
  • digit
  • elbow
  • femur
  • fibula
  • finger
  • foot
  • forearm
  • hand
  • hip
  • humerus
  • knee
  • lower limb
  • radius
  • shin
  • shoulder
  • thigh
  • tibia
  • toe
  • ulna
  • upper limb
  • wrist
  • hair
  • peripheral nervous system
  • skin
  • spinal column
  • vertebrae
genes like me logo Genes that share expression patterns with ZNF469: view

Primer Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for ZNF469 Gene

Orthologs for ZNF469 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF469 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZNF469 33 34
  • 98.25 (n)
(Bos Taurus)
Mammalia ZNF469 33 34
  • 72.23 (n)
(Canis familiaris)
Mammalia ZNF469 33 34
  • 71.37 (n)
(Mus musculus)
Mammalia Gm22 33 34
  • 65.62 (n)
Zfp469 16
(Rattus norvegicus)
Mammalia Zfp469 33
  • 65.19 (n)
(Monodelphis domestica)
Mammalia ZNF469 34
  • 35 (a)
(Ornithorhynchus anatinus)
Mammalia ZNF469 34
  • 34 (a)
(Gallus gallus)
Aves ZNF469 34
  • 27 (a)
(Anolis carolinensis)
Reptilia ZNF469 34
  • 26 (a)
Species where no ortholog for ZNF469 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF469 Gene

Gene Tree for ZNF469 (if available)
Gene Tree for ZNF469 (if available)

Paralogs for ZNF469 Gene

No data available for Paralogs for ZNF469 Gene

Variants for ZNF469 Gene

Sequence variations from dbSNP and Humsavar for ZNF469 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs273585616 Pathogenic 88,427,547(+) CAGCA(C/G)CCCGG reference, missense
rs273585617 Pathogenic 88,427,760(+) CCCAC(C/T)GGGGA reference, missense
rs273585618 Pathogenic 88,430,169(+) GCCCC(C/G/T)GCTCC reference, missense
rs273585619 Pathogenic 88,430,589(+) GAGGA(A/C)GGCTC reference, missense
rs273585620 Pathogenic 88,431,917(+) CGTTC(A/G/T)CATGT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ZNF469 Gene

Variant ID Type Subtype PubMed ID
nsv952070 CNV deletion 24416366
nsv827829 CNV gain 20364138
nsv827828 CNV gain 20364138
nsv528456 CNV loss 19592680
nsv471112 CNV gain 18288195
nsv471111 CNV loss 18288195
nsv1061590 CNV gain 25217958
esv2758669 CNV gain 17122850
dgv5293n54 CNV loss 21841781
dgv171n21 CNV loss 19592680

Variation tolerance for ZNF469 Gene

Gene Damage Index Score: 12.25; 94.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF469 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF469 Gene

Disorders for ZNF469 Gene

MalaCards: The human disease database

(6) MalaCards diseases for ZNF469 Gene - From: HGMD, OMIM, ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
brittle cornea syndrome 1
  • corneal fragility, keratoglobus, blue sclerae, joint hyperextensibility
keratoconus 1
  • ktcn1
brittle cornea syndrome 2
  • brittle cornea syndrome
  • conical cornea
refractive error
  • refractive errors
- elite association - COSMIC cancer census association via MalaCards


  • Brittle cornea syndrome 1 (BCS1) [MIM:229200]: A disorder characterized by extreme corneal thinning resulting in corneal rupture after minor trauma, blue sclerae, keratoconus or keratoglobus, hyperelasticity of the skin, and hypermobility of the joints. It shares some features with, but is much less severe than, the ocular form of Ehlers-Danlos syndrome (EDS6). {ECO:0000269 PubMed:18452888}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for ZNF469

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with ZNF469: view

No data available for Genatlas for ZNF469 Gene

Publications for ZNF469 Gene

  1. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11347906) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 2 3 4 60
  2. Common genetic variants near the Brittle Cornea Syndrome locus ZNF469 influence the blinding disease risk factor central corneal thickness. (PMID: 20485516) Lu Y … Mackey DA (PLoS genetics 2010) 3 45 60
  3. Deleterious mutations in the Zinc-Finger 469 gene cause brittle cornea syndrome. (PMID: 18452888) Abu A … Pras E (American journal of human genetics 2008) 3 4 60
  4. Evidence against ZNF469 being causative for keratoconus in Polish patients. (PMID: 26806788) Karolak JA … Gajecka M (Acta ophthalmologica 2016) 3 60
  5. Kelch Domain of Gigaxonin Interacts with Intermediate Filament Proteins Affected in Giant Axonal Neuropathy. (PMID: 26460568) Johnson-Kerner BL … Wichterle H (PloS one 2015) 3 60

Products for ZNF469 Gene

Sources for ZNF469 Gene

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