Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF436-AS1 Gene

Subcategory (RNA class) for ZNF436-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF436-AS1 Gene

  • ZNF436 Antisense RNA 1 2 3 4 5
  • C1orf213 3 4
  • Chromosome 1 Open Reading Frame 213 2
  • ZNF436 Antisense Gene Protein 1 4

External Ids for ZNF436-AS1 Gene

Previous HGNC Symbols for ZNF436-AS1 Gene

  • C1orf213

Summaries for ZNF436-AS1 Gene

GeneCards Summary for ZNF436-AS1 Gene

ZNF436-AS1 (ZNF436 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF436-AS1 Gene

Genomics for ZNF436-AS1 Gene

Regulatory Elements for ZNF436-AS1 Gene

Enhancers for ZNF436-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G023625 0.9 dbSUPER 52 +256.7 256681 0.8 HDGF PKNOX1 FOXA2 ATF1 SIN3A YBX1 GLI4 TCF12 ZNF207 FOS ZNF436-AS1 LINC01355 RPL11 PNRC2 MDS2 ID3 E2F2 ELOA GC01P023610 LOC729856
GH01G023383 1.4 Ensembl ENCODE dbSUPER 28.2 +15.8 15828 2.4 HDAC1 PKNOX1 FOXA2 CBX3 ZBTB40 ZNF766 ELK1 FOS SMARCA5 ZNF263 ZNF436-AS1 TCEA3 ENSG00000271420 GC01M023400
GH01G023553 1.9 FANTOM5 ENCODE dbSUPER 18.3 +190.3 190250 12.2 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZNF436-AS1 LINC01355 MDS2 E2F2 ASAP3 ID3 ZNF436 TCEA3 GC01M023559 LOC105376859
GH01G023975 2.7 Ensembl ENCODE dbSUPER 12.4 +609.9 609866 6.4 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF436-AS1 CNR2 SRSF10 PNRC2
GH01G023401 1.6 Ensembl ENCODE dbSUPER 20.3 +34.2 34169 3.1 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF143 FOS DEK ZNF436-AS1 ZNF436 GC01M023399 ENSG00000232482
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF436-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF436-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000003018 -71 2601 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D

Genomic Location for ZNF436-AS1 Gene

Chromosome:
1
Start:
23,368,971 bp from pter
End:
23,371,839 bp from pter
Size:
2,869 bases
Orientation:
Plus strand

Genomic View for ZNF436-AS1 Gene

Genes around ZNF436-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF436-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF436-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF436-AS1 Gene

Proteins for ZNF436-AS1 Gene

  • Protein details for ZNF436-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NC38-CA213_HUMAN
    Recommended name:
    Putative uncharacterized protein ZNF436-AS1
    Protein Accession:
    Q8NC38
    Secondary Accessions:
    • Q2VPR7

    Protein attributes for ZNF436-AS1 Gene

    Size:
    126 amino acids
    Molecular mass:
    14381 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF436-AS1 Gene

Post-translational modifications for ZNF436-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF436-AS1 Gene

Domains & Families for ZNF436-AS1 Gene

Protein Domains for ZNF436-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF436-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF436-AS1 Gene

Function for ZNF436-AS1 Gene

Phenotypes for ZNF436-AS1 Gene

GenomeRNAi human phenotypes for ZNF436-AS1:
genes like me logo Genes that share phenotypes with ZNF436-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF436-AS1 Gene

Localization for ZNF436-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF436-AS1 Gene

Pathways & Interactions for ZNF436-AS1 Gene

SuperPathways for ZNF436-AS1 Gene

No Data Available

Interacting Proteins for ZNF436-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF436-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF436-AS1 Gene

Drugs & Compounds for ZNF436-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF436-AS1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF436-AS1 Gene

No ASD Table

Relevant External Links for ZNF436-AS1 Gene

GeneLoc Exon Structure for
ZNF436-AS1
ECgene alternative splicing isoforms for
ZNF436-AS1

Expression for ZNF436-AS1 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF436-AS1 Gene

Orthologs for ZNF436-AS1 Gene

Evolution for ZNF436-AS1 Gene

ENSEMBL:
Gene Tree for ZNF436-AS1 (if available)
TreeFam:
Gene Tree for ZNF436-AS1 (if available)

No data available for Orthologs for ZNF436-AS1 Gene

Paralogs for ZNF436-AS1 Gene

No data available for Paralogs for ZNF436-AS1 Gene

Variants for ZNF436-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF436-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000557919 -- 23,368,497(+) CTGTG(C/G)CTGCC intron-variant, upstream-variant-2KB
rs1000702933 -- 23,368,136(+) AGTTC(C/T)GGCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000724348 -- 23,367,878(+) ACTAA(A/T)CCCAG intron-variant, upstream-variant-2KB
rs1000844257 -- 23,368,750(+) AATTT(A/G)GGCGC intron-variant, upstream-variant-2KB
rs1001675912 -- 23,371,658(+) CTCCA(C/T)TGGCT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF436-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv525446 CNV gain 19592680

Variation tolerance for ZNF436-AS1 Gene

Gene Damage Index Score: 0.45; 9.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF436-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF436-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF436-AS1 Gene

Disorders for ZNF436-AS1 Gene

Relevant External Links for ZNF436-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF436-AS1

No disorders were found for ZNF436-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF436-AS1 Gene

Publications for ZNF436-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for ZNF436-AS1 Gene

Sources for ZNF436-AS1 Gene

Content
Loading form....