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Aliases for ZNF425 Gene

Aliases for ZNF425 Gene

  • Zinc Finger Protein 425 2 3

External Ids for ZNF425 Gene

Previous GeneCards Identifiers for ZNF425 Gene

  • GC00U902913
  • GC07M148237
  • GC07M148430
  • GC07M148799
  • GC07M142877

Summaries for ZNF425 Gene

GeneCards Summary for ZNF425 Gene

ZNF425 (Zinc Finger Protein 425) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF786.

UniProtKB/Swiss-Prot for ZNF425 Gene

  • Acts as a transcriptional repressor.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF425 Gene

Genomics for ZNF425 Gene

Regulatory Elements for ZNF425 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF425 Gene

Start:
149,102,784 bp from pter
End:
149,126,346 bp from pter
Size:
23,563 bases
Orientation:
Minus strand

Genomic View for ZNF425 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF425 Gene

Proteins for ZNF425 Gene

  • Protein details for ZNF425 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6IV72-ZN425_HUMAN
    Recommended name:
    Zinc finger protein 425
    Protein Accession:
    Q6IV72
    Secondary Accessions:
    • B3KPM1
    • Q08AG3

    Protein attributes for ZNF425 Gene

    Size:
    752 amino acids
    Molecular mass:
    87721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF425 Gene

Proteomics data for ZNF425 Gene at MOPED

Post-translational modifications for ZNF425 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF425 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF425 Gene

Domains for ZNF425 Gene

Gene Families for ZNF425 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF425 Gene

Suggested Antigen Peptide Sequences for ZNF425 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6IV72

UniProtKB/Swiss-Prot:

ZN425_HUMAN :
  • Q6IV72
Domain:
  • The C2H2 domain is necessary for the transcriptional repression
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 19 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF425: view

Function for ZNF425 Gene

Molecular function for ZNF425 Gene

UniProtKB/Swiss-Prot Function: Acts as a transcriptional repressor.

Gene Ontology (GO) - Molecular Function for ZNF425 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF425: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF425

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF425 Gene

Localization for ZNF425 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF425 Gene

Nucleus. Cytoplasm. Note=Predominantly expressed in the nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF425 Gene COMPARTMENTS Subcellular localization image for ZNF425 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF425 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IDA 21266108
GO:0005737 cytoplasm IDA 21266108
genes like me logo Genes that share ontologies with ZNF425: view

Pathways for ZNF425 Gene

SuperPathways for ZNF425 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF425: view

Pathways by source for ZNF425 Gene

2 Reactome pathways for ZNF425 Gene

Interacting Proteins for ZNF425 Gene

Gene Ontology (GO) - Biological Process for ZNF425 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated --
GO:0045892 negative regulation of transcription, DNA-templated IDA 21266108
genes like me logo Genes that share ontologies with ZNF425: view

Transcripts for ZNF425 Gene

mRNA/cDNA for ZNF425 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF425 Gene

Zinc finger protein 425:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF425

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZNF425
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF425 Gene

No ASD Table

Relevant External Links for ZNF425 Gene

GeneLoc Exon Structure for
ZNF425
ECgene alternative splicing isoforms for
ZNF425

Expression for ZNF425 Gene

mRNA expression in normal human tissues for ZNF425 Gene

SOURCE GeneReport for Unigene cluster for ZNF425 Gene Hs.31743

genes like me logo Genes that share expressions with ZNF425: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF425 Gene

Orthologs for ZNF425 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF425 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF425 35
  • 99.47 (n)
  • 99.6 (a)
ZNF425 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF425 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 41 (a)
OneToMany
-- 36
  • 33 (a)
OneToMany
Species with no ortholog for ZNF425:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF425 Gene

ENSEMBL:
Gene Tree for ZNF425 (if available)
TreeFam:
Gene Tree for ZNF425 (if available)

Paralogs for ZNF425 Gene

Paralogs for ZNF425 Gene

Selected SIMAP similar genes for ZNF425 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF425: view

Variants for ZNF425 Gene

Sequence variations from dbSNP and Humsavar for ZNF425 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1137432 -- 149,104,566(-) CTGCA(A/G)CACAT synonymous-codon, reference
rs1969466 -- 149,113,773(-) GAGAT(C/T)GAGAC intron-variant
rs1969467 -- 149,113,212(-) ggatc(A/T)cttga intron-variant
rs1969468 -- 149,113,190(-) cgaga(C/T)tatcc intron-variant
rs3084478 -- 149,113,421(+) AGACT(-/G/GT/TG)TTAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF425 Gene

Variant ID Type Subtype PubMed ID
nsv889402 CNV Loss 21882294
esv2668984 CNV Deletion 23128226
esv2458810 CNV Deletion 19546169
esv2396942 CNV Deletion 18987734
esv2735327 CNV Deletion 23290073
esv1422572 CNV Deletion 17803354
esv7630 CNV Loss 19470904

Relevant External Links for ZNF425 Gene

HapMap Linkage Disequilibrium report
ZNF425

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF425 Gene

Disorders for ZNF425 Gene

No disorders were found for ZNF425 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF425 Gene

Publications for ZNF425 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A novel human KRAB-related zinc finger gene ZNF425 inhibits mitogen- activated protein kinase signaling pathway. (PMID: 21266108) Wang Y. … Wu X. (BMB Rep. 2011) 3 4
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ZNF425 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF425
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF425
    • Block miRNA regulation of ZNF425 using miScript Target Protectors

    Sources for ZNF425 Gene

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