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Aliases for ZNF420 Gene

Aliases for ZNF420 Gene

  • Zinc Finger Protein 420 2 3
  • ATM And P53-Associated KZNF Protein 3
  • APAK 3

External Ids for ZNF420 Gene

Previous GeneCards Identifiers for ZNF420 Gene

  • GC00U900995
  • GC19P042262
  • GC19P037569
  • GC19P034038
  • GC19P037498

Summaries for ZNF420 Gene

GeneCards Summary for ZNF420 Gene

ZNF420 (Zinc Finger Protein 420) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF630.

UniProtKB/Swiss-Prot for ZNF420 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF420 Gene

Genomics for ZNF420 Gene

Regulatory Elements for ZNF420 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF420 Gene

Start:
37,007,857 bp from pter
End:
37,130,357 bp from pter
Size:
122,501 bases
Orientation:
Plus strand

Genomic View for ZNF420 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF420 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF420 Gene

Proteins for ZNF420 Gene

  • Protein details for ZNF420 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAQ5-ZN420_HUMAN
    Recommended name:
    Zinc finger protein 420
    Protein Accession:
    Q8TAQ5
    Secondary Accessions:
    • B2RDY6
    • Q96ML5

    Protein attributes for ZNF420 Gene

    Size:
    688 amino acids
    Molecular mass:
    80247 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF420 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF420 Gene

Proteomics data for ZNF420 Gene at MOPED

Post-translational modifications for ZNF420 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF420 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for ZNF420

No data available for DME Specific Peptides for ZNF420 Gene

Domains for ZNF420 Gene

Gene Families for ZNF420 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZNF420 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TAQ5

UniProtKB/Swiss-Prot:

ZN420_HUMAN :
  • Q8TAQ5
Domain:
  • Contains 1 KRAB domain.
Similarity:
  • Contains 19 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF420: view

Function for ZNF420 Gene

Molecular function for ZNF420 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF420 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IBA --
GO:0005515 protein binding IPI 20713054
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF420: view

Phenotypes for ZNF420 Gene

genes like me logo Genes that share phenotypes with ZNF420: view

Animal Model Products

CRISPR Products

miRNA for ZNF420 Gene

miRTarBase miRNAs that target ZNF420

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF420

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF420 Gene

Localization for ZNF420 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF420 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF420 Gene COMPARTMENTS Subcellular localization image for ZNF420 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF420 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with ZNF420: view

Pathways for ZNF420 Gene

SuperPathways for ZNF420 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF420: view

Pathways by source for ZNF420 Gene

2 Reactome pathways for ZNF420 Gene

Gene Ontology (GO) - Biological Process for ZNF420 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF420: view

Transcripts for ZNF420 Gene

Unigene Clusters for ZNF420 Gene

Zinc finger protein 420:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF420

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF420 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8
SP1: - -
SP2: - -
SP3: - - -
SP4:

Relevant External Links for ZNF420 Gene

GeneLoc Exon Structure for
ZNF420
ECgene alternative splicing isoforms for
ZNF420

Expression for ZNF420 Gene

mRNA expression in normal human tissues for ZNF420 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for ZNF420 Gene Hs.444992

genes like me logo Genes that share expressions with ZNF420: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ZNF420 Gene

Orthologs for ZNF420 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF420 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZNF420 35
  • 92.67 (n)
  • 95.34 (a)
ZNF420 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100682968 35
  • 90.61 (n)
  • 91.82 (a)
ZNF420 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp420 35
  • 85.18 (n)
  • 90.83 (a)
Zfp420 16
Zfp420 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC101059449 35
  • 99.76 (n)
  • 99.71 (a)
ZNF420 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfp383 35
  • 83.62 (n)
  • 92.04 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 55 (a)
OneToMany
Species with no ortholog for ZNF420:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF420 Gene

ENSEMBL:
Gene Tree for ZNF420 (if available)
TreeFam:
Gene Tree for ZNF420 (if available)

Paralogs for ZNF420 Gene

Selected SIMAP similar genes for ZNF420 Gene using alignment to 8 proteins:

Pseudogenes.org Pseudogenes for ZNF420 Gene

genes like me logo Genes that share paralogs with ZNF420: view

Variants for ZNF420 Gene

Sequence variations from dbSNP and Humsavar for ZNF420 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1148394 -- 37,095,086(+) AGATC(A/C/G)CGCCA intron-variant
rs1238294 -- 37,122,587(+) gtgca(C/T)atgta intron-variant
rs1402468 -- 37,129,346(+) TGATC(A/T)TTTTG utr-variant-3-prime, intron-variant
rs1521096 -- 37,126,872(+) TCTGC(A/C)TGTGT intron-variant
rs1521097 -- 37,126,948(+) GTTTT(A/G)TGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF420 Gene

Variant ID Type Subtype PubMed ID
nsv833818 CNV Gain 17160897
dgv3856n71 CNV Gain 21882294
nsv2477 CNV Loss 18451855

Relevant External Links for ZNF420 Gene

HapMap Linkage Disequilibrium report
ZNF420
Human Gene Mutation Database (HGMD)
ZNF420

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF420 Gene

Disorders for ZNF420 Gene

No disorders were found for ZNF420 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ZNF420 Gene

Publications for ZNF420 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. KRAB-type zinc-finger protein Apak specifically regulates p53-dependent apoptosis. (PMID: 19377469) Tian C. … He F. (Nat. Cell Biol. 2009) 3
  4. Differential regulation of Apak by various DNA damage signals. (PMID: 19629643) Wang S. … Chen H. (Mol. Cell. Biochem. 2010) 3
  5. ARF-dependent regulation of ATM and p53 associated KZNF (Apak) protein activity in response to oncogenic stress. (PMID: 20713054) Wang S. … Zhang L. (FEBS Lett. 2010) 3

Products for ZNF420 Gene

Sources for ZNF420 Gene

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