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Aliases for ZNF416 Gene

Aliases for ZNF416 Gene

  • Zinc Finger Protein 416 2 3 5

External Ids for ZNF416 Gene

Previous GeneCards Identifiers for ZNF416 Gene

  • GC00U900989
  • GC19M062775
  • GC19M058082
  • GC19M054395

Summaries for ZNF416 Gene

GeneCards Summary for ZNF416 Gene

ZNF416 (Zinc Finger Protein 416) is a Protein Coding gene. Among its related pathways are Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF211.

UniProtKB/Swiss-Prot for ZNF416 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF416 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF416 Gene

Genomics for ZNF416 Gene

GeneHancer (GH) Regulatory Elements for ZNF416 Gene

Promoters and enhancers for ZNF416 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I057578 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.4 350 1.6 PKNOX1 ATF1 ZNF133 ARID4B SIN3A BRCA1 ZNF48 YY1 ETS1 E2F8 ZIK1 ZNF416 TRIM28 ZNF264 ZNF805 ZNF549 ZNF548 ZNF134 ZNF543 ZNF417
GH19I057599 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 19.4 -20.9 -20857 1.5 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 E2F8 ZNF207 ZNF143 KLF13 ZNF530 ZNF606 ZNF549 ZNF135 ZNF417 ZNF132 ZNF418 ZNF446 ZNF17 LOC105372482
GH19I057809 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 -234.0 -234038 7.2 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SLC30A9 ZNF552 TRIM28 ZNF264 ZNF805 ZNF543 ENSG00000269867 ZNF134 ZNF587 ZNF324B ZNF586
GH19I057278 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.1 +297.7 297704 6.7 ZFP64 FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZC3H11A MEF2D ZNF460 ZNF460-AS1 ZNF264 ZNF805 ZNF134 ZNF543 ZNF549 ZNF17 ZNF329 ZNF256
GH19I058553 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12 -977.9 -977933 7.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 CHMP2A UBE2M TRIM28 ZNF417 ZNF134 ZNF606 ZNF274 MZF1 LOC100128398 ERVK3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF416 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF416 gene promoter:

Genomic Locations for ZNF416 Gene

Genomic Locations for ZNF416 Gene
chr19:57,571,010-57,579,180
(GRCh38/hg38)
Size:
8,171 bases
Orientation:
Minus strand
chr19:58,082,934-58,090,295
(GRCh37/hg19)

Genomic View for ZNF416 Gene

Genes around ZNF416 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF416 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF416 Gene

Proteins for ZNF416 Gene

  • Protein details for ZNF416 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BWM5-ZN416_HUMAN
    Recommended name:
    Zinc finger protein 416
    Protein Accession:
    Q9BWM5
    Secondary Accessions:
    • Q9NWW8

    Protein attributes for ZNF416 Gene

    Size:
    594 amino acids
    Molecular mass:
    67188 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91257.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for ZNF416 Gene

Post-translational modifications for ZNF416 Gene

No Post-translational modifications

Other Protein References for ZNF416 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF416 Gene

Domains & Families for ZNF416 Gene

Gene Families for ZNF416 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Suggested Antigen Peptide Sequences for ZNF416 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BWM5

UniProtKB/Swiss-Prot:

ZN416_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF416: view

Function for ZNF416 Gene

Molecular function for ZNF416 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF416: view
genes like me logo Genes that share phenotypes with ZNF416: view

miRNA for ZNF416 Gene

Targeted motifs for ZNF416 Gene
HOMER Transcription Factor Regulatory Elements motif ZNF416
  • Consensus sequence: WDNCTGGGCA Submotif: canonical Cell Type: HEK293 GEO ID: GSE58341

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models and Transcription Factor Targets for ZNF416 Gene

Localization for ZNF416 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF416 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF416 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nuclear bodies (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF416: view

Pathways & Interactions for ZNF416 Gene

SuperPathways for ZNF416 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF416: view

Pathways by source for ZNF416 Gene

2 Reactome pathways for ZNF416 Gene

Interacting Proteins for ZNF416 Gene

Gene Ontology (GO) - Biological Process for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF416: view

No data available for SIGNOR curated interactions for ZNF416 Gene

Drugs & Compounds for ZNF416 Gene

No Compound Related Data Available

Transcripts for ZNF416 Gene

mRNA/cDNA for ZNF416 Gene

(3) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(33) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF416 Gene

Zinc finger protein 416:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF416 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2: -

Relevant External Links for ZNF416 Gene

GeneLoc Exon Structure for
ZNF416
ECgene alternative splicing isoforms for
ZNF416

Expression for ZNF416 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF416 Gene

Protein differential expression in normal tissues from HIPED for ZNF416 Gene

This gene is overexpressed in Platelet (51.8) and Peripheral blood mononuclear cells (17.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF416 Gene



Protein tissue co-expression partners for ZNF416 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF416 Gene:

ZNF416

SOURCE GeneReport for Unigene cluster for ZNF416 Gene:

Hs.247711
genes like me logo Genes that share expression patterns with ZNF416: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF416 Gene

Orthologs for ZNF416 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF416 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF416 33 34
  • 99.66 (n)
cow
(Bos Taurus)
Mammalia ZNF416 33
  • 76.33 (n)
-- 34
  • 59 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Zfp418 33
  • 68.4 (n)
mouse
(Mus musculus)
Mammalia Zfp418 33 16 34
  • 68.3 (n)
Species where no ortholog for ZNF416 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF416 Gene

ENSEMBL:
Gene Tree for ZNF416 (if available)
TreeFam:
Gene Tree for ZNF416 (if available)

Paralogs for ZNF416 Gene

(484) SIMAP similar genes for ZNF416 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF416: view

Variants for ZNF416 Gene

Sequence variations from dbSNP and Humsavar for ZNF416 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000028527 -- 57,570,723(-) C/A downstream_transcript_variant
rs1000669958 -- 57,579,024(-) G/A upstream_transcript_variant
rs1000993940 -- 57,573,504(-) C/T coding_sequence_variant, missense_variant
rs1001201647 -- 57,576,982(-) T/G intron_variant
rs1001881866 -- 57,576,648(-) A/G intron_variant

Variation tolerance for ZNF416 Gene

Residual Variation Intolerance Score: 40.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.27; 25.29% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF416 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF416

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF416 Gene

Disorders for ZNF416 Gene

Additional Disease Information for ZNF416

No disorders were found for ZNF416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF416 Gene

Publications for ZNF416 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZNF416 Gene

Sources for ZNF416 Gene

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