Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF416 Gene

Aliases for ZNF416 Gene

  • Zinc Finger Protein 416 2 3

External Ids for ZNF416 Gene

Previous GeneCards Identifiers for ZNF416 Gene

  • GC00U900989
  • GC19M062775
  • GC19M058082
  • GC19M054395

Summaries for ZNF416 Gene

GeneCards Summary for ZNF416 Gene

ZNF416 (Zinc Finger Protein 416) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF17.

UniProtKB/Swiss-Prot for ZNF416 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF416 Gene

Genomics for ZNF416 Gene

Regulatory Elements for ZNF416 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF416 Gene

57,571,019 bp from pter
57,578,927 bp from pter
7,909 bases
Minus strand

Genomic View for ZNF416 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF416 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF416 Gene

Proteins for ZNF416 Gene

  • Protein details for ZNF416 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 416
    Protein Accession:
    Secondary Accessions:
    • Q9NWW8

    Protein attributes for ZNF416 Gene

    594 amino acids
    Molecular mass:
    67188 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA91257.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for ZNF416 Gene

Proteomics data for ZNF416 Gene at MOPED

Post-translational modifications for ZNF416 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF416 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF416 Gene

Domains for ZNF416 Gene

Gene Families for ZNF416 Gene

  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZNF416 Gene

Graphical View of Domain Structure for InterPro Entry



  • Q9BWM5
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 12 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF416: view

Function for ZNF416 Gene

Molecular function for ZNF416 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF416: view

Animal Model Products

CRISPR Products

miRNA for ZNF416 Gene

miRTarBase miRNAs that target ZNF416

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF416

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF416 Gene

Localization for ZNF416 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF416 Gene

Subcellular locations from

Jensen Localization Image for ZNF416 Gene COMPARTMENTS Subcellular localization image for ZNF416 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF416: view

Pathways for ZNF416 Gene

SuperPathways for ZNF416 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF416: view

Pathways by source for ZNF416 Gene

2 Reactome pathways for ZNF416 Gene

Interacting Proteins for ZNF416 Gene

Gene Ontology (GO) - Biological Process for ZNF416 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF416: view

Transcripts for ZNF416 Gene

mRNA/cDNA for ZNF416 Gene

(3) REFSEQ mRNAs :
(33) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF416 Gene

Zinc finger protein 416:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF416

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF416 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP2: -

Relevant External Links for ZNF416 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF416 Gene

mRNA expression in normal human tissues for ZNF416 Gene

Protein differential expression in normal tissues for ZNF416 Gene

This gene is overexpressed in Platelet (51.8) and Peripheral blood mononuclear cells (17.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF416 Gene

SOURCE GeneReport for Unigene cluster for ZNF416 Gene Hs.247711

genes like me logo Genes that share expressions with ZNF416: view

Expression partners for ZNF416 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF416 Gene

Orthologs for ZNF416 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF416 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia ZNF416 35
  • 76.33 (n)
  • 62.79 (a)
-- 36
  • 59 (a)
(Mus musculus)
Mammalia Zfp418 35
  • 68.3 (n)
  • 55.45 (a)
Zfp418 16
Zfp418 36
  • 46 (a)
(Pan troglodytes)
Mammalia ZNF416 35
  • 99.66 (n)
  • 99.66 (a)
ZNF416 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Zfp418 35
  • 68.4 (n)
  • 54.76 (a)
Species with no ortholog for ZNF416:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF416 Gene

Gene Tree for ZNF416 (if available)
Gene Tree for ZNF416 (if available)

Paralogs for ZNF416 Gene

Selected SIMAP similar genes for ZNF416 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF416: view

Variants for ZNF416 Gene

Sequence variations from dbSNP and Humsavar for ZNF416 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs727963 -- 57,579,450(+) TACTT(A/C)AATTC upstream-variant-2KB
rs886265 -- 57,578,153(+) CATGG(C/G)CTGAT intron-variant
rs3746222 -- 57,573,562(-) CTGAC(C/T)GACAT reference, synonymous-codon
rs7247851 -- 57,579,879(+) cagga(C/T)ctcac upstream-variant-2KB
rs10409744 -- 57,577,058(+) GGTAA(C/T)AGCAT intron-variant

Relevant External Links for ZNF416 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF416 Gene

Disorders for ZNF416 Gene

No disorders were found for ZNF416 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ZNF416 Gene

Publications for ZNF416 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZNF416 Gene

Sources for ZNF416 Gene

Back to Top