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ZNF383 Gene

protein-coding   GIFtS: 50
GCID: GC19P037709

Zinc Finger Protein 383

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 3831 2

External Ids:    HGNC: 186091   Entrez Gene: 1630872   Ensembl: ENSG000001882837   UniProtKB: Q8NA423   

Export aliases for ZNF383 gene to outside databases

Previous GC identifers: GC19P042410 GC19P042411 GC19P034186


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF383 Gene:
ZNF383 (zinc finger protein 383) is a protein-coding gene. Diseases associated with ZNF383 include prostatitis. An important paralog of this gene is ZNF79.

UniProtKB/Swiss-Prot: ZN383_HUMAN, Q8NA42
Function: May function as a transcriptional repressor, suppressing transcriptional activities mediated by MAPK
signaling pathways




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF383 gene promoter:
         c-Fos   AP-1   ATF-2   Arnt   Pax-3   HOXA5   c-Jun   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF383 promoter sequence
   Search Chromatin IP Primers for ZNF383

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF383


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.12   Ensembl cytogenetic band:  19q13.12   HGNC cytogenetic band: 19q13.13

ZNF383 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF383 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P037709:  view genomic region     (about GC identifiers)

Start:
37,708,828 bp from pter      End:
37,734,828 bp from pter
Size:
26,001 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ZN383_HUMAN, Q8NA42 (See protein sequence)
Recommended Name: Zinc finger protein 383  
Size: 475 amino acids; 54613 Da
Developmental stage: In tissues from a six months embryo, highly expressed in heart, testis and skeletal muscle,
lower expression levels in kidney, intestines and prostate
Secondary accessions: Q6X2C7

Explore the universe of human proteins at neXtProt for ZNF383: NX_Q8NA42

Explore proteomics data for ZNF383 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF383 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_689817.1  
    ENSEMBL proteins: 
     ENSP00000466101   ENSP00000464871   ENSP00000340132   ENSP00000465246   ENSP00000466246  
    Reactome Protein details: Q8NA42

    ZNF383 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q8NA42

    ProtoNet protein and cluster: Q8NA42

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN383_HUMAN, Q8NA42
    Domain: The KRAB domain is responsible for the transcriptional repressor activity
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 11 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF383 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN383_HUMAN, Q8NA42
    Function: May function as a transcriptional repressor, suppressing transcriptional activities mediated by MAPK
    signaling pathways

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IBA--
    GO:0046872metal ion binding IEA--
         
    ZNF383 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF383:
     Synthetic lethal with Ras 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF383
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    miRNA
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    miRTarBase miRNAs that target ZNF383:
    hsa-mir-484 (MIRT042301)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN383_HUMAN, Q8NA42: Nucleus. Cytoplasm. Note=Shuttling between the nucleus and cytoplasm may occur under
    different stimulation and growth conditions
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--
    GO:0005737cytoplasm IEA--

    ZNF383 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF383 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF383
        Generic Transcription Pathway



    ZNF383 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF383
    Interactions:

        Search GeneGlobe Interaction Network for ZNF383

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for ZNF383 (Q8NA423 ENSP000003401324) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EWSR1Q018443, ENSP000003810314I2D: score=1 STRING: ENSP00000381031
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IBA--

    ZNF383 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF383 (ZN383)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZNF383 gene: 
    NM_152604.1  

    Unigene Cluster for ZNF383:

    Zinc finger protein 383
    Hs.590975  [show with all ESTs]
    Unigene Representative Sequence: AK122892
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000585441 ENST00000586068 ENST00000586658 ENST00000590503 ENST00000589413
    ENST00000352998(uc002ofs.1 uc002oft.1 uc002ofu.1) ENST00000588371
    ENST00000588250
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat ZNF383
      QuantiTect SYBR Green Assays in human, mouse, rat ZNF383
      QuantiFast Probe-based Assays in human, mouse, rat ZNF383

    Additional mRNA sequence: 

    AK091760.1 AK093182.1 AK122892.1 AY260141.1 AY438646.1 

    6 DOTS entries:

    DT.91672697  DT.40131761  DT.121446801  DT.40211443  DT.421870  DT.121446958 

    Selected AceView cDNA sequences (see all 35):

    NM_152604 CA423205 AX747168 AK093182 BF432571 AY438646 BX484548 AK091760 
    BE551586 AX747975 AA354834 AI421229 AI671611 AY260141 AI740987 BI334205 
    AW243224 BX483443 BU192848 AI305279 BM564660 AK122892 CD637896 BQ024162 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF383 (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b · 7c · 7d
    SP1:        -     -                       -     -                                 
    SP2:              -                       -     -                                 
    SP3:                                      -     -                                 
    SP4:                                            -                                 
    SP5:                                                                              


    ECgene alternative splicing isoforms for ZNF383

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF383 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CACGAATTCA
    ZNF383 Expression
    About this image

    ZNF383 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF383 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.590975

    UniProtKB/Swiss-Prot: ZN383_HUMAN, Q8NA42
    Tissue specificity: Expressed in heart, placenta, liver, pancreas and with a higher level in skeletal muscle

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF383 gene from Selected species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp3831 , 5 zinc finger protein 3831, 5 84.99(n)1
    85.56(a)1
      7 (17.26 cM)5
    737291  NM_001243908.11  NP_001230837.11 
     299085175 
    chicken
    (Gallus gallus)
    Aves LOC1008589321 zinc finger protein 135-like 57.83(n)
    57.39(a)
      100858932  XM_003643711.2  XP_003643759.2 


    ENSEMBL Gene Tree for ZNF383 (if available)
    TreeFam Gene Tree for ZNF383 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF383 gene
    ZNF792  ZNF5702  ZFP302  ZNF5292  ZNF286B2  ZNF7902  ZNF1812  ZNF2872  
    ZNF5822  ZNF4712  ZFP822  ZNF286A2  ZNF2502  ZNF8792  ZNF354C2  ZNF742  
    ZNF5832  ZNF3912  ZNF5542  ZNF4542  ZFP902  ENSG000001876072  ZFP142  ZNF3312  
    ZNF354A2  ZNF4612  ZNF354B2  ZNF342  ZNF5272  ZNF5652  
    Selected SIMAP similar genes for ZNF383 using alignment to 3 protein entries:     ZN383_HUMAN (see all proteins) (see all similar genes):
    ZNF232    ZNF283    DKFZp686M04222    HZF36    ZFP3    ZFS-1
    ZNF625-ZNF20    ZNF331    ZNF790    DKFZp571N1833    DKFZp686H10254    DKFZp686H20223
    ZNF132    ZSCAN21    ZNF721    ZFP90    ZNF649    DKFZp666C237

    ZNF383 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZNF383
    PGOHUM00000233180


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF383 (see all 438)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs680528111,2
    C--34196836(+) ACACA-/CACACACA/
    CACACACACACA
    GAGAC
    1 -- int11NA 2
    rs1877958241,2
    --37715499(+) ACCCAG/TGCTGG 1 -- us2k10--------
    rs1918629401,2
    --37715547(+) CCTTCC/TAGGCT 1 -- us2k10--------
    rs1164878301,2
    F--37715580(+) CTCCCG/AGGTAG 1 -- us2k11Minor allele frequency- A:0.03WA 118
    rs360410611,2
    C--37715705(+) TTTTTT/-AGACG 1 -- us2k11Minor allele frequency- -:0.00NA 2
    rs1406247651,2
    --37715731(+) TCTCAC/TTCTGT 1 -- us2k10--------
    rs104112361,2
    C,F,A--37715789(+) tgcttC/Tccggg 1 -- us2k15Minor allele frequency- T:0.30NA WA CSA 10
    rs1841492181,2
    --37715812(+) TCTTGC/TCTCAG 1 -- us2k10--------
    rs1476705251,2
    --37716059(+) ATGGTA/GCGATC 1 -- us2k10--------
    rs1423733421,2
    --37716255(+) CCTCCC/TAAAGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF383 (37708828 - 37734828 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for ZNF383:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1570552CNV Insertion17803354
    esv1445664CNV Insertion17803354
    esv2580999CNV Insertion19546169
    nsv911655CNV Loss21882294
    dgv3856n71CNV Gain21882294
    nsv9717CNV Gain+Loss18304495

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF383
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for ZNF383:    About MalaCards
    prostatitis


    ZNF383 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZNF383

    Export disorders for ZNF383 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF383 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF383)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ZNF383, a novel KRAB-containing zinc finger protein, suppresses MAPK signaling pathway. (PubMed id 15964543)1, 2, 9 Cao L.... Liu M. (Biochem. Biophys. Res. Commun. 2005)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PubMed id 23870195)1 Wojczynski M.K....Reilly M.P. (BMC Med. Genet. 2013)
    4. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (Cell 2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 163087 HGNC: 18609 AceView: ZNF383 Ensembl:ENSG00000188283 euGenes: HUgn163087
    ECgene: ZNF383 H-InvDB: ZNF383

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF383 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF383 gene:
    Search GeneIP for patents involving ZNF383

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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