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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF37A Gene

protein-coding   GIFtS: 51
GCID: GC10P038383

Zinc Finger Protein 37A

(Previous name: zinc finger protein 37a (KOX 21))
  Search for ZNF37A
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 37A1 2
Zinc Finger Protein 37a (KOX 21)1 2
Zinc Finger Protein KOX212 3
KOX212 3
ZNF372 3

External Ids:    HGNC: 131021   Entrez Gene: 75872   Ensembl: ENSG000000754077   UniProtKB: P170323   

Export aliases for ZNF37A gene to outside databases

Previous GC identifers: GC10P038130 GC10P038323 GC10P038190 GC10P038387 GC10P038423 GC10P038091


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZNF37A Gene: 
ZNF37A (zinc finger protein 37A) is a protein-coding gene. Among its related super-pathways are Gene Expression. GO annotations related to this gene include DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF334.

UniProtKB/Swiss-Prot: ZN37A_HUMAN, P17032
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF37A Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NT_008705.16  NC_018921.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF37A gene promoter:
         AML1a   CUTL1   Nkx2-5   GATA-2   FAC1   POU2F1   POU2F1a   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF37A promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF37A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF37A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10p11.2   Ensembl cytogenetic band:  10p11.1   HGNC cytogenetic band: 10p11.2

ZNF37A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF37A gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P038383:  view genomic region     (about GC identifiers)

Start:
38,383,264 bp from pter      End:
38,412,280 bp from pter
Size:
29,017 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZN37A_HUMAN, P17032 (See protein sequence)
Recommended Name: Zinc finger protein 37A  
Size: 561 amino acids; 65418 Da
Subcellular location: Nucleus (Potential)
Secondary accessions: B3KRQ3 D3DRZ3 Q96B88

Explore the universe of human proteins at neXtProt for ZNF37A: NX_P17032

Explore proteomics data for ZNF37A at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P17032

  • ZNF37A Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF37A Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001007095.1  NP_001171572.1  NP_003412.1  

    ENSEMBL proteins: 
     ENSP00000354377   ENSP00000329141  
    Reactome Protein details: P17032
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    Cloud-Clone Corp. Proteins for ZNF37A 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus NAS8464732

    ZNF37A for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR001909 Krueppel-associated_box
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P17032

    ProtoNet protein and cluster: P17032

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN37A_HUMAN, P17032
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 12 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF37A for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN37A_HUMAN, P17032
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF37A:
    zinc finger protein 37a (KOX21) (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity NAS8464732
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZNF37A for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for ZNF37A About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Generic Transcription Pathway
    Generic Transcription Pathway0.47
    Gene Expression0.47

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    2        Reactome Pathways for ZNF37A
        Generic Transcription Pathway
    Gene Expression



    ZNF37A for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF37A

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent NAS8464732

    ZNF37A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF37A (ZN37A)

    Search CenterWatch for drugs/clinical trials and news about ZNF37A / ZN37A

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF37A gene (3 alternative transcripts): 
    NM_001007094.2  NM_001178101.1  NM_003421.2  

    Unigene Cluster for ZNF37A:

    Zinc finger protein 37A
    Hs.292575  [show with all ESTs]
    Unigene Representative Sequence: BX647089
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000498773 ENST00000361085 ENST00000479469 ENST00000477790 ENST00000351773(uc001izk.3 uc001izl.3 uc001izm.3)

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    Additional mRNA sequence: 

    AJ492195.1 AK092012.1 AK130521.1 BC015858.1 BX647089.1 X52352.1 X69115.1 

    7 DOTS entries:

    DT.442042  DT.75125693  DT.121298018  DT.40213915  DT.121298014  DT.121298032  DT.92046694 

    24/135 AceView cDNA sequences (see all 135):

    CA776673 F05932 BF063264 AA575921 AA856645 BQ001336 BU782936 X69115 
    BX382859 AX747310 AW242407 BQ771921 BQ694233 AL699082 F02845 BF059259 
    CD674617 BI324882 AW510550 AA765929 AI452514 BM710618 BU633511 AA456654 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF37A (see all 11)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b
    SP1:                                -     -     -     -                                                                     
    SP2:                                -     -     -     -                                                                     
    SP3:                                            -     -                                                                     
    SP4:                                            -                                                                           
    SP5:                          -                 -     -                                                                     


    ECgene alternative splicing isoforms for ZNF37A

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF37A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACCCCATAA
    ZNF37A Expression
    About this image


    See ZNF37A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF37A

    SOURCE GeneReport for Unigene cluster: Hs.292575
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZNF37A gene from 2/4 species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia ZNF37A1 zinc finger protein 37A 88.25(n)
    82.73(a)
      488951  XM_546068.3  XP_546068.3 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG312246
    --
    9(a)
    1 → many
    3R(14475843-14484963)


    ENSEMBL Gene Tree for ZNF37A (if available)
    TreeFam Gene Tree for ZNF37A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF37A gene
    ZNF3342  ZNF1752  ZNF6742  ZNF4872  ZNF5102  LOC1002875152  ZNF6142  RBAK2  
    ZNF262  ZNF6132  ZNF812  ZNF6492  KRBOX42  ZNF33B2  ENSG000002673602  ZNF7822  
    ZNF122  ENSG000002296312  ZNF5672  ZNF1822  ZNF2482  ZNF3002  ZNF3822  
    18/439 SIMAP similar genes for ZNF37A using alignment to 1 protein entry:     ZN37A_HUMAN(see all similar genes):
    DKFZp313M0722    ZNF323    DKFZp686H10254    ZSCAN21    DKFZp686N14223    ZNF3
    DKFZp666C237    DKFZp762K012    HZF30    HZF36    ZNF146    ZNF696
    ZNF702P    ZNF79    ZSCAN22    ZNF250    ZKSCAN1    ZNF32

    ZNF37A for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for ZNF37A
    PGOHUM00000238431 PGOHUM00000240622


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/774 SNPs in ZNF37A are shown (see all 774)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1898966231,2
    --38381299(+) TAAAAA/CCAGGA 3 -- us2k10--------
    rs9325381,2
    C,F,A,H--38381314(+) TTAGCC/TGGGCG 3 -- us2k112Minor allele frequency- T:0.48NA WA CSA EA 378
    rs1821731611,2
    C--38381390(+) GAGGCA/GGAGGT 3 -- us2k10--------
    rs1137448161,2
    C--38381393(-) GCAACC/TGCCGC 3 -- us2k12Minor allele frequency- T:0.33WA CSA 3
    rs1131429481,2
    C--38381415(+) TCTTGGCAAT/
            
    GCACT
    3 -- us2k11Minor allele frequency- -:0.00CSA 2
    rs732463851,2
    C--38381419(+) TGGCAA/CTGCAC 3 -- us2k10--------
    rs664968791,2
    C--38381457(+) AGTCT-/AAAAAAA 3 -- us2k11Minor allele frequency- AA:0.00NA 2
    rs2007048271,2
    C--38381474(-) TATTTC/TTTTTT 3 -- us2k10--------
    rs122696321,2
    H--38381510(+) TGTTTC/TTTAAA 3 -- us2k14Minor allele frequency- T:0.00NS EA 392
    rs1864897511,2
    --38381591(+) CGGATC/GACGAG 3 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF37A (38383264 - 38412280 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for ZNF37A:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv997851CNV Insertion20482838
    nsv6465CNV Loss18451855
    nsv895030CNV Loss21882294
    nsv895031CNV Gain21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZNF37A for disorders           About MalaCards

    ZNF37A for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZNF37A

    Export disorders for ZNF37A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF37A gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZNF37A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Duplicated KOX zinc finger gene clusters flank the centromere of human chromosome 10: evidence for a pericentric inversion during primate evolution. (PubMed id 8464732)1, 2, 3, 9 Tunnacliffe A.... Ponder B.A. (1993)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
    5. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p. (PubMed id 12566394)1, 2 Guy J....Jackson M.S. (2003)
    6. Twenty-seven nonoverlapping zinc finger cDNAs from hu man T cells map to nine different chromosomes with apparent clustering. (PubMed id 2014798)1, 3 Huebner K....Thiesen H.J. (1991)
    7. Multiple genes encoding zinc finger domains are expressed in human T cells. (PubMed id 2288909)1, 2 Thiesen H.-J. (1990)
    8. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (2007)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7587 HGNC: 13102 AceView: ZNF37A Ensembl:ENSG00000075407 euGenes: HUgn7587
    ECgene: ZNF37A H-InvDB: ZNF37A

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF37A Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZNF37A gene:
    Search GeneIP for patents involving ZNF37A

    GeneCards and IP:
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