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ZNF354C Gene

protein-coding   GIFtS: 44
GCID: GC05P178487

Zinc Finger Protein 354C

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 354C1 2
Kidney, Ischemia, And Developmentally-Regulated Protein 32 3
KID32 3
KRAB-Zinc Finger Protein Synten2
hKID33

External Ids:    HGNC: 167361   Entrez Gene: 308322   Ensembl: ENSG000001779327   UniProtKB: Q86Y253   

Export aliases for ZNF354C gene to outside databases

Previous GC identifers: GC05P178579 GC05P179396 GC05P178601 GC05P178420 GC05P173215


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF354C Gene:
ZNF354C (zinc finger protein 354C) is a protein-coding gene. Diseases associated with ZNF354C include ischemia. An important paralog of this gene is ZNF79.

UniProtKB/Swiss-Prot: Z354C_HUMAN, Q86Y25
Function: May function as a transcription repressor. Suppresses osteogenic effects of RUNX2. Binds to 5'-CCACA-3'
core sequence. May be involved in osteoblastic differentiation (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000005.10  NT_023133.14  NC_018916.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for ZNF354C
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF354C promoter sequence
   Search Chromatin IP Primers for ZNF354C

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF354C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q35   Ensembl cytogenetic band:  5q35.3   HGNC cytogenetic band: 5q35

ZNF354C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF354C gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P178487:  view genomic region     (about GC identifiers)

Start:
178,487,416 bp from pter      End:
178,510,538 bp from pter
Size:
23,123 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: Z354C_HUMAN, Q86Y25 (See protein sequence)
Recommended Name: Zinc finger protein 354C  
Size: 554 amino acids; 64847 Da
Subunit: Interacts with RUNX2. Binds consensus element OSE2 (By similarity)
Developmental stage: Expressed in brain. Very low expression in lung and liver
Sequence caution: Sequence=AAH63312.1; Type=Frameshift; Positions=473;
Secondary accessions: Q6P4P9 Q8NFX1

Explore the universe of human proteins at neXtProt for ZNF354C: NX_Q86Y25

Explore proteomics data for ZNF354C at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF354C Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_055409.1  
    ENSEMBL proteins: 
     ENSP00000324064  
    Reactome Protein details: Q86Y25

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q86Y25

    ProtoNet protein and cluster: Q86Y25

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: Z354C_HUMAN, Q86Y25
    Domain: KRAB domain is not required for nuclear targeting or for DNA binding (By similarity)
    Domain: Zinc finger region is involved in nuclear targeting and DNA-binding (By similarity)
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 11 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF354C for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: Z354C_HUMAN, Q86Y25
    Function: May function as a transcription repressor. Suppresses osteogenic effects of RUNX2. Binds to 5'-CCACA-3'
    core sequence. May be involved in osteoblastic differentiation (By similarity)

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IBA--
    GO:0046872metal ion binding IEA--
         
    ZNF354C for ontologies           About GeneDecksing


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    Z354C_HUMAN, Q86Y25: Nucleus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2
    cytoskeleton1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    ZNF354C for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF354C About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF354C
        Generic Transcription Pathway



    ZNF354C for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF354C
    Interactions:

        Search GeneGlobe Interaction Network for ZNF354C

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IBA--

    ZNF354C for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF354C (Z354C)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZNF354C gene: 
    NM_014594.1  

    Unigene Cluster for ZNF354C:

    Zinc finger protein 354C
    Hs.272328  [show with all ESTs]
    Unigene Representative Sequence: BC063312
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000315475(uc003mju.3)
    miRNA
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF354C
      QuantiFast Probe-based Assays in human, mouse, rat ZNF354C

    Additional mRNA sequence: 

    AF395540.1 AF525463.1 AK124385.1 AL137483.1 BC063312.1 

    12 DOTS entries:

    DT.102839208  DT.100693473  DT.100693459  DT.92378501  DT.92474344  DT.100693465  DT.100693483  DT.100766644 
    DT.121460129  DT.75170857  DT.92474308  DT.92474348 

    Selected AceView cDNA sequences (see all 48):

    AL134573 AL710024 AL134572 CA413917 AF525463 AL137483 BQ219442 NM_014594 
    CN482682 BX499542 AF395540 AI660780 CB990315 N26133 BE887949 BC063312 
    BQ428199 AA433922 CB988779 BF589884 AA280139 AI633267 BE350465 N77739 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF354C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGTGTGTGTA
    ZNF354C Expression
    About this image

    ZNF354C Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF354C Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.272328

    UniProtKB/Swiss-Prot: Z354C_HUMAN, Q86Y25
    Tissue specificity: Expressed in kidney and skeletal muscle. Very low expression in brain and heart

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZNF354C gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp354c1 , 5 zinc finger protein 354C1, 5 77.96(n)1
    75.96(a)1
      11 (30.93 cM)5
    309441  NM_013922.41  NP_038950.31 
     508110865 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG83883   -- 30(a)
    (best of 2)
        --


    ENSEMBL Gene Tree for ZNF354C (if available)
    TreeFam Gene Tree for ZNF354C (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF354C gene
    ZNF792  ZNF5702  ZFP302  ZNF5292  ZNF286B2  ZNF7902  ZNF3832  ZNF1812  
    ZNF2872  ZNF5822  ZNF4712  ZFP822  ZNF286A2  ZNF2502  ZNF8792  ZNF742  
    ZNF5832  ZNF3912  ZNF5542  ZNF4542  ZFP902  ENSG000001876072  ZFP142  ZNF3312  
    ZNF354A2  ZNF4612  ZNF354B2  ZNF342  ZNF5272  ZNF5652  
    Selected SIMAP similar genes for ZNF354C using alignment to 1 protein entry:     Z354C_HUMAN(see all similar genes):
    DKFZp434G1930    ZNF78L1    HZF36    HZF30    zf30    DKFZp666C237
    ZSCAN23    DKFZp313M0722    GLI4    ZNF323    ZNF818P    DKFZp686H10254
    DKFZp686M04222    DKFZp762K012    MGC12518    ZNF146    ZNF32    ZNF738

    ZNF354C for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF354C (see all 478)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1454267951,2
    --178485625(+) AGAGAC/TGGGGT 1 -- us2k10--------
    rs1851480841,2
    C--178486163(+) GGGGGG/TGTGTG 1 -- us2k10--------
    rs1476733141,2
    --178486180(+) TATTTC/TTATAC 1 -- us2k10--------
    rs1423258101,2
    --178486227(+) TTAGAC/TATAAG 1 -- us2k10--------
    rs1910431441,2
    --178486307(+) AAAGGC/GAACTC 1 -- us2k10--------
    rs1434000011,2
    C--178486342(+) AATTAA/GTACAG 1 -- us2k10--------
    rs1156720511,2
    C,F--178486416(+) GCAACC/TCTACT 1 -- us2k11Minor allele frequency- T:0.05WA 118
    rs783597411,2
    C,F--178486544(+) AAGAAA/CATGTC 1 -- us2k12Minor allele frequency- C:0.04WA 120
    rs771090141,2
    C,F--178486589(+) AAAATG/AAATGA 1 -- us2k11Minor allele frequency- A:0.02WA 118
    rs2010812691,2
    --178486670(+) AAGAC-/AAGTAC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF354C (178487416 - 178510538 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF354C:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv510009CNV Loss20534489

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF354C
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for ZNF354C:    
    About MalaCards
    ischemia


    ZNF354C for disorders           About GeneDecksing


    Export disorders for ZNF354C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF354C gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF354C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Cloning and characterization of a novel human zinc finger gene, hKid3, from a C2H2-ZNF enriched human embryonic cDNA library. (PubMed id 15555547)1, 2 Gao L.... Li W.-X. (Biochem. Biophys. Res. Commun. 2004)
    3. Characterisation, chromosomal localisation and expression of the mouse Kid3 gene. (PubMed id 10786630)1, 3 Watson R.P....Boulter C.A. (Biochim. Biophys. Acta 2000)
    4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 30832 HGNC: 16736 AceView: ZNF354C Ensembl:ENSG00000177932 euGenes: HUgn30832
    ECgene: ZNF354C H-InvDB: ZNF354C

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF354C Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF354C gene:
    Search GeneIP for patents involving ZNF354C

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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