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Aliases for ZNF350-AS1 Gene

Subcategory (RNA class) for ZNF350-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF350-AS1 Gene

  • ZNF350 Antisense RNA 1 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 3 (Non-Protein Coding) 2 3
  • CTC-429C10.4 3
  • Uc002pyc 3
  • HCCAT3 3

External Ids for ZNF350-AS1 Gene

Previous HGNC Symbols for ZNF350-AS1 Gene

  • HCCAT3

Summaries for ZNF350-AS1 Gene

GeneCards Summary for ZNF350-AS1 Gene

ZNF350-AS1 (ZNF350 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF350-AS1 Gene

Genomics for ZNF350-AS1 Gene

Regulatory Elements for ZNF350-AS1 Gene

Enhancers for ZNF350-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF350-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNF350-AS1 Gene

Chromosome:
19
Start:
51,949,134 bp from pter
End:
51,981,367 bp from pter
Size:
32,234 bases
Orientation:
Plus strand

Genomic View for ZNF350-AS1 Gene

Genes around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF350-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF350-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF350-AS1 Gene

Proteins for ZNF350-AS1 Gene

Post-translational modifications for ZNF350-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF350-AS1 Gene

Domains & Families for ZNF350-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF350-AS1 Gene

Function for ZNF350-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF350-AS1 Gene

Localization for ZNF350-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF350-AS1 Gene

Pathways & Interactions for ZNF350-AS1 Gene

SuperPathways for ZNF350-AS1 Gene

No Data Available

Interacting Proteins for ZNF350-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF350-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF350-AS1 Gene

Drugs & Compounds for ZNF350-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF350-AS1 Gene

mRNA/cDNA for ZNF350-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF350-AS1 Gene

No ASD Table

Relevant External Links for ZNF350-AS1 Gene

GeneLoc Exon Structure for
ZNF350-AS1
ECgene alternative splicing isoforms for
ZNF350-AS1

Expression for ZNF350-AS1 Gene

mRNA expression in normal human tissues for ZNF350-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF350-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF350-AS1 Gene

Orthologs for ZNF350-AS1 Gene

Evolution for ZNF350-AS1 Gene

ENSEMBL:
Gene Tree for ZNF350-AS1 (if available)
TreeFam:
Gene Tree for ZNF350-AS1 (if available)

No data available for Orthologs for ZNF350-AS1 Gene

Paralogs for ZNF350-AS1 Gene

No data available for Paralogs for ZNF350-AS1 Gene

Variants for ZNF350-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF350-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10425994 -- 51,959,733(+) ATGCC(A/C)CCTTT intron-variant
rs10544257 -- 51,952,318(+) TAAAT(-/TA)TATAT intron-variant
rs10544258 -- 51,952,663(+) AAAAT(-/GAG)GTAGC intron-variant
rs10693214 -- 51,962,583(+) GACAA(-/CAA)TTACA intron-variant
rs11084126 -- 51,951,782(+) AGGAG(A/G)GTCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF350-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1067e212 CNV gain 25503493
dgv143e55 CNV gain 17911159
dgv3626n100 CNV gain 25217958
dgv425n27 CNV gain 19166990
dgv6523n54 CNV gain 21841781
esv2242567 CNV deletion 18987734
esv2718779 CNV deletion 23290073
esv2758767 CNV gain+loss 17122850
esv3644680 CNV gain 21293372
nsv1125524 CNV deletion 24896259
nsv1140251 OTHER inversion 24896259
nsv525259 CNV loss 19592680
nsv580001 CNV gain 21841781
nsv580006 CNV loss 21841781
nsv833872 CNV loss 17160897

Relevant External Links for ZNF350-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF350-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF350-AS1 Gene

Disorders for ZNF350-AS1 Gene

Relevant External Links for ZNF350-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF350-AS1

No disorders were found for ZNF350-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF350-AS1 Gene

Publications for ZNF350-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for ZNF350-AS1 Gene

Sources for ZNF350-AS1 Gene

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