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Aliases for ZNF350-AS1 Gene

Subcategory (RNA class) for ZNF350-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ZNF350-AS1 Gene

  • ZNF350 Antisense RNA 1 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 3 (Non-Protein Coding) 2 3
  • CTC-429C10.4 3
  • Uc002pyc 3
  • HCCAT3 3

External Ids for ZNF350-AS1 Gene

Previous HGNC Symbols for ZNF350-AS1 Gene

  • HCCAT3

Summaries for ZNF350-AS1 Gene

GeneCards Summary for ZNF350-AS1 Gene

ZNF350-AS1 (ZNF350 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF350-AS1 Gene

Genomics for ZNF350-AS1 Gene

Regulatory Elements for ZNF350-AS1 Gene

Enhancers for ZNF350-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F051903 1.1 ENCODE 17.2 -43.9 -43908 4.3 HDGF CREB3L1 SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207 ZNF350-AS1 ZNF577 ZNF480 ZNF350 ZNF615 FPR3 ZNF808 SIGLEC5 ZNF649 ZNF616
GH19F051926 1.1 ENCODE 15.6 -21.8 -21803 1.8 PKNOX1 CREB3L1 WRNIP1 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF350-AS1 ENSG00000269483 ZNF480 ZNF613 ZNF615 ZNF808 ZNF577 ZNF841 PIR55859
GH19F051960 0.9 ENCODE 11.8 +11.7 11739 1.7 HDAC1 ARID4B DMAP1 RAD21 CREM ZNF654 ZEB2 REST PPARG KAT8 ZNF350-AS1 ZNF613 ZNF350 ZNF432 ZNF615 ZNF841
GH19F051907 0.5 Ensembl ENCODE 14.6 -40.9 -40852 1.1 ZNF350-AS1 ZNF350 ZNF615 FPR3 ZNF649 ZNF841 ZNF577 ZNF616 LOC100419707
GH19F052094 1 ENCODE 5.9 +146.2 146204 2.3 ATF1 CREB3L1 ARID4B ZNF48 GLIS2 ZNF263 SP3 NCOA1 MXD4 ZNF518A ZNF615 ZNF649 FPR3 ZNF432 ZNF350-AS1 ZNF841 LOC100419835
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF350-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001818702 67 799

Genomic Location for ZNF350-AS1 Gene

51,949,134 bp from pter
51,981,367 bp from pter
32,234 bases
Plus strand

Genomic View for ZNF350-AS1 Gene

Genes around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF350-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF350-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF350-AS1 Gene

Proteins for ZNF350-AS1 Gene

Post-translational modifications for ZNF350-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF350-AS1 Gene

Domains & Families for ZNF350-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF350-AS1 Gene

Function for ZNF350-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF350-AS1 Gene

Localization for ZNF350-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF350-AS1 Gene

Pathways & Interactions for ZNF350-AS1 Gene

SuperPathways for ZNF350-AS1 Gene

No Data Available

Interacting Proteins for ZNF350-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF350-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ZNF350-AS1 Gene

Transcripts for ZNF350-AS1 Gene

mRNA/cDNA for ZNF350-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF350-AS1 Gene

No ASD Table

Relevant External Links for ZNF350-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF350-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF350-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF350-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF350-AS1 Gene

Orthologs for ZNF350-AS1 Gene

Evolution for ZNF350-AS1 Gene

Gene Tree for ZNF350-AS1 (if available)
Gene Tree for ZNF350-AS1 (if available)

No data available for Orthologs for ZNF350-AS1 Gene

Paralogs for ZNF350-AS1 Gene

No data available for Paralogs for ZNF350-AS1 Gene

Variants for ZNF350-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF350-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1017378 -- 51,953,949(+) TCACC(A/T)TCAGT intron-variant
rs1017379 -- 51,954,053(+) AGCAT(C/T)TTCTA intron-variant
rs1030685 -- 51,972,656(+) taatg(A/G)atata intron-variant
rs10411149 -- 51,979,186(+) ggaag(C/T)tgaga intron-variant
rs10417913 -- 51,971,492(+) aacag(C/G)aaact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF350-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833872 CNV loss 17160897
nsv580006 CNV loss 21841781
nsv580001 CNV gain 21841781
nsv525259 CNV loss 19592680
nsv1140251 OTHER inversion 24896259
nsv1125524 CNV deletion 24896259
esv3644680 CNV gain 21293372
esv2758767 CNV gain+loss 17122850
esv2718779 CNV deletion 23290073
esv2242567 CNV deletion 18987734
dgv6523n54 CNV gain 21841781
dgv425n27 CNV gain 19166990
dgv3626n100 CNV gain 25217958
dgv143e55 CNV gain 17911159
dgv1067e212 CNV gain 25503493

Relevant External Links for ZNF350-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF350-AS1 Gene

Disorders for ZNF350-AS1 Gene

Relevant External Links for ZNF350-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ZNF350-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF350-AS1 Gene

Publications for ZNF350-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF350-AS1 Gene

Sources for ZNF350-AS1 Gene

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