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Aliases for ZNF350-AS1 Gene

Subcategory (RNA class) for ZNF350-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF350-AS1 Gene

  • ZNF350 Antisense RNA 1 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 3 (Non-Protein Coding) 2 3
  • CTC-429C10.4 3
  • Uc002pyc 3
  • HCCAT3 3

External Ids for ZNF350-AS1 Gene

Previous HGNC Symbols for ZNF350-AS1 Gene

  • HCCAT3

Summaries for ZNF350-AS1 Gene

GeneCards Summary for ZNF350-AS1 Gene

ZNF350-AS1 (ZNF350 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF350-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF350-AS1 Gene

Genomics for ZNF350-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZNF350-AS1 Gene

Promoters and enhancers for ZNF350-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I051948 Enhancer 0.3 ENCODE 560.5 +0.1 107 0.6 ATF1 ZNF350-AS1 ZNF613 ZNF350 ZNF615 ZNF432 SIGLEC5
GH19I051903 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 17.2 -43.9 -43908 4.3 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF649 ZNF350-AS1 ZNF577 ZNF350 ZNF615 FPR3 SIGLEC5 ZNF616 LOC100419707
GH19I051926 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 15.6 -21.8 -21824 1.8 PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF613 ZNF611 ZNF577 ZNF137P ZNF841 ZNF350-AS1 ENSG00000268970 ZNF701 ZNF28 ENSG00000269483
GH19I052093 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.9 +146.0 146005 2.7 ATF1 ARID4B SIN3A ZNF48 POLR2B GLIS2 E2F8 KLF13 SP3 NCOA1 ZNF841 ZNF432 GC19M052098 ZNF613 ZNF137P ENSG00000268970 ZNF701 ZNF611 ZNF28 ZNF578
GH19I051960 Enhancer 0.8 ENCODE 11.8 +11.7 11738 1.7 HDAC1 FOXA2 ARID4B DMAP1 TCF12 ZNF766 CREM ZEB2 PPARG ZNF592 ZNF350-AS1 ZNF613 ZNF350 ZNF432 ZNF615 ZNF841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF350-AS1 Gene

Genomic Locations for ZNF350-AS1 Gene
chr19:51,949,134-51,981,367
(GRCh38/hg38)
Size:
32,234 bases
Orientation:
Plus strand
chr19:52,452,387-52,484,620
(GRCh37/hg19)

Genomic View for ZNF350-AS1 Gene

Genes around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF350-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF350-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF350-AS1 Gene

Proteins for ZNF350-AS1 Gene

Post-translational modifications for ZNF350-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF350-AS1 Gene

Domains & Families for ZNF350-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF350-AS1 Gene

Function for ZNF350-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF350-AS1 Gene

Localization for ZNF350-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF350-AS1 Gene

Pathways & Interactions for ZNF350-AS1 Gene

SuperPathways for ZNF350-AS1 Gene

No Data Available

Interacting Proteins for ZNF350-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF350-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF350-AS1 Gene

Drugs & Compounds for ZNF350-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF350-AS1 Gene

mRNA/cDNA for ZNF350-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF350-AS1 Gene

No ASD Table

Relevant External Links for ZNF350-AS1 Gene

GeneLoc Exon Structure for
ZNF350-AS1
ECgene alternative splicing isoforms for
ZNF350-AS1

Expression for ZNF350-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF350-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF350-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF350-AS1 Gene

Orthologs for ZNF350-AS1 Gene

Evolution for ZNF350-AS1 Gene

ENSEMBL:
Gene Tree for ZNF350-AS1 (if available)
TreeFam:
Gene Tree for ZNF350-AS1 (if available)

No data available for Orthologs for ZNF350-AS1 Gene

Paralogs for ZNF350-AS1 Gene

No data available for Paralogs for ZNF350-AS1 Gene

Variants for ZNF350-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF350-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000015884 -- 51,950,682(+) G/T intron_variant
rs1000016345 -- 51,963,118(+) G/A intron_variant
rs1000077684 -- 51,957,052(+) G/T intron_variant
rs1000099533 -- 51,971,005(+) G/A intron_variant
rs1000301240 -- 51,981,362(+) A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF350-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1067e212 CNV gain 25503493
dgv143e55 CNV gain 17911159
dgv3626n100 CNV gain 25217958
dgv425n27 CNV gain 19166990
dgv6523n54 CNV gain 21841781
esv2242567 CNV deletion 18987734
esv2718779 CNV deletion 23290073
esv2758767 CNV gain+loss 17122850
esv3644680 CNV gain 21293372
nsv1125524 CNV deletion 24896259
nsv1140251 OTHER inversion 24896259
nsv525259 CNV loss 19592680
nsv580001 CNV gain 21841781
nsv580006 CNV loss 21841781
nsv833872 CNV loss 17160897

Additional Variant Information for ZNF350-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF350-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF350-AS1 Gene

Disorders for ZNF350-AS1 Gene

Additional Disease Information for ZNF350-AS1

No disorders were found for ZNF350-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF350-AS1 Gene

Publications for ZNF350-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZNF350-AS1 Gene

Sources for ZNF350-AS1 Gene

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