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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF35 Gene

protein-coding   GIFtS: 47
GCID: GC03P044690

Zinc Finger Protein 35

(Previous name: zinc finger protein 35 (clone HF.10))
  Search for ZNF35
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 351 2
Zinc Finger Protein 35 (Clone HF.10)1 2
Zinc Finger Protein HF.102 3
HF102 5
HF.102
Zfp1052

External Ids:    HGNC: 130991   Entrez Gene: 75842   Ensembl: ENSG000001699817   OMIM: 1945335   UniProtKB: P136823   

Export aliases for ZNF35 gene to outside databases

Previous GC identifers: GC03P044155 GC03P043870 GC03P044509 GC03P044650 GC03P044665


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZNF35 Gene: 
ZNF35 (zinc finger protein 35) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF660.

UniProtKB/Swiss-Prot: ZNF35_HUMAN, P13682
Function: May be involved in transcriptional regulation. Involved in cell differentiation and/or proliferation

Gene Wiki entry for ZNF35 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NT_022517.18  NC_018914.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF35 gene promoter:
         HOXA9B   HOXA9   MIF-1   HNF-1A   AREB6   NRF-2   HNF-1   ARP-1   Meis-1a   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF35 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF35

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF35


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p21.32   Ensembl cytogenetic band:  3p21.31   HGNC cytogenetic band: 3p21.32

ZNF35 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF35 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P044690:  view genomic region     (about GC identifiers)

Start:
44,690,219 bp from pter      End:
44,702,283 bp from pter
Size:
12,065 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZNF35_HUMAN, P13682 (See protein sequence)
Recommended Name: Zinc finger protein 35  
Size: 527 amino acids; 59089 Da
Subcellular location: Nucleus (Potential)
Sequence caution: Sequence=AAA85451.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=BAG37343.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAA30268.1;
Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: B2RBU6 Q53Y54 Q96D01

Explore the universe of human proteins at neXtProt for ZNF35: NX_P13682

Explore proteomics data for ZNF35 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P13682

  • ZNF35 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF35 Protein Expression
    REFSEQ proteins: NP_003411.3  
    ENSEMBL proteins: 
     ENSP00000379368   ENSP00000404336   ENSP00000404354   ENSP00000391573   ENSP00000296092  
     ENSP00000401311   ENSP00000443714  

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    Novus Biologicals ZNF35 Lysates
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    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for ZNF35 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005623cell ISS--
    GO:0005634nucleus IDA--
    GO:0048471perinuclear region of cytoplasm IDA--

    ZNF35 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P13682

    ProtoNet protein and cluster: P13682

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZNF35_HUMAN, P13682
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 11 C2H2-type zinc fingers


    ZNF35 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZNF35_HUMAN, P13682
    Function: May be involved in transcriptional regulation. Involved in cell differentiation and/or proliferation

         Genatlas biochemistry entry for ZNF35:
    zinc finger protein 35,cHF.10 (C2H2 type,Kruppel-like),expressed in testis,involved in germ cell differentiation
    process

         Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding TAS2108922
    GO:0003700sequence-specific DNA binding transcription factor activity IDA1572646
    GO:0008270zinc ion binding ----
    GO:0043565sequence-specific DNA binding IDA8477855
         
    ZNF35 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for ZNF35:
     Decreased NANOG protein expres  Decreased OCT4 protein express  Decreased POU5F1-GFP protein e 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Zfp105):
     reproductive system 

    ZNF35 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for ZNF35 
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    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF35

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for ZNF35 (P136823 ENSP000003793684) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CDC5LQ994593, ENSP000003605324I2D: score=1 STRING: ENSP00000360532
    CREB1P162203, ENSP000003876994I2D: score=1 STRING: ENSP00000387699
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent TAS2108922
    GO:0007283spermatogenesis ISS--
    GO:0071300cellular response to retinoic acid ISS--

    ZNF35 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF35

    Search CenterWatch for drugs/clinical trials and news about ZNF35

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF35 gene: 
    NM_003420.3  

    Unigene Cluster for ZNF35:

    Zinc finger protein 35
    Hs.288658  [show with all ESTs]
    Unigene Representative Sequence: NM_003420
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396056(uc003cnq.3) ENST00000432115 ENST00000415571 ENST00000399560
    ENST00000296092(uc003cnr.3) ENST00000453164 ENST00000542250
    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate ZNF35:
    hsa-miR-146a* hsa-miR-3202
    SwitchGear 3'UTR luciferase reporter plasmidZNF35 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF35

    Additional mRNA sequence: 

    AK300581.1 AK314821.1 BC013597.1 BC015892.1 BT006962.1 

    5 DOTS entries:

    DT.411761  DT.91740103  DT.120928282  DT.120928252  DT.92422061 

    24/40 AceView cDNA sequences (see all 40):

    AA688182 BU632402 BP356870 BC013597 AW589660 BX282449 BC015892 NM_003420 
    BP356448 BT006962 CB216546 BQ004231 N76704 BX482698 CK002244 AA843461 
    AA583153 AA935618 CB141404 BF339197 BM728399 X07289 AI809774 BE882819 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF35 expression in normal human tissues (normalized intensities)      ZNF35 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCCCAAAAAA
    ZNF35 Expression
    About this image


    ZNF35 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Blood (Hematopoietic System)
             Natural Killer Cells Peripheral Blood
     
     Prostate (Endocrine System)

    See ZNF35 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF35

    SOURCE GeneReport for Unigene cluster: Hs.288658
        SABiosciences Custom PCR Arrays for ZNF35
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF35

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZNF35 gene from 5/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp1051 , 5 zinc finger protein 1051, 5 84.35(n)1
    81.49(a)1
      9 (73.23 cM)5
    226461  NM_009544.21  NP_033570.21 
     1229230725 
    chicken
    (Gallus gallus)
    Aves ZSCAN26
    Uncharacterized protein
    41(a)
    1 → many
    1(60057410-60059657)
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 7)
    Uncharacterized protein
    (see all 7)
    53(a)
    49(a)
    (see all 7)
    many ↔ many
    many ↔ many
    (see all 7)
    GL343312.1(8265-9200)
    AAWZ02041495(3704-5129)
    zebrafish
    (Danio rerio)
    Actinopterygii BX842593.26
    CR792418.16
    (see all 11)
    Uncharacterized protein
    (see all 11)
    42(a)
    42(a)
    (see all 11)
    many ↔ many
    many ↔ many
    (see all 11)
    5(54699992-54700939)
    4(33542000-33543552)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG122996
    --
    17(a)
    1 → many
    2L(10737345-10740762)


    ENSEMBL Gene Tree for ZNF35 (if available)
    TreeFam Gene Tree for ZNF35 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF35 gene
    ZNF6602  
    18/523 SIMAP similar genes for ZNF35 using alignment to 5 protein entries:     ZNF35_HUMAN (see all proteins) (see all similar genes):
    kr-znf3    ZNF78L1    ZFS-5    ZKSCAN1    ZNF818P    ZNF664
    ZNF300    ZNF383    ZNF418    ZNF56    ZFP41    ZFS-1
    ZKSCAN8    ZNF146    ZNF22    ZNF500    ZNF544    ZSCAN16

    ZNF35 for paralogs           About GeneDecksing


    3 Pseudogenes.org Pseudogenes for ZNF35
    PGOHUM00000259978 PGOHUM00000259979 PGOHUM00000235811


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/231 SNPs in ZNF35 are shown (see all 231)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1465186911,2
    --44690490(+) TCCCGG/TCTGCT 1 -- int10--------
    rs18686031,2
    C,F,H--44690512(+) GCCTGG/CTCCGG 1 -- int18Minor allele frequency- C:0.14NS EA NA CSA WA 656
    rs1834043191,2
    C--44690673(+) GGGACA/CGGAGG 1 -- int10--------
    rs756563831,2
    F--44690750(+) AACTAG/ATCTTA 1 -- int11Minor allele frequency- A:0.03WA 118
    rs1157906711,2
    F--44690902(+) AAAGAG/ATATGA 1 -- int11Minor allele frequency- A:0.03WA 118
    rs779866031,2
    F--44690951(+) CGCACC/GCTTTT 1 -- int11Minor allele frequency- G:0.03WA 118
    rs1411655081,2
    --44691022(+) ACTAGC/TAAGGT 1 -- int10--------
    rs747333811,2
    F--44691079(+) GATAAA/GGGGTT 1 -- int11Minor allele frequency- G:0.03WA 118
    rs1447696771,2
    C--44691391(+) CTATTG/TTGAAA 1 -- int10--------
    rs1174258911,2
    F--44691399(+) AAATAC/TGGAAA 1 -- int11Minor allele frequency- T:0.02EA 120

    HapMap Linkage Disequilibrium report for ZNF35 (44690219 - 44702283 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ZNF35: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF35
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF35

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZNF35 for disorders           About MalaCards
    OMIM gene information: 194533    OMIM disorders: --


    ZNF35 for disorders           About GeneDecksing


    Export disorders for ZNF35 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF35 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with ZNF35)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Structural and functional organization of the HF.10 human zinc finger gene (ZNF35) located on chromosome 3p21-p22. (PubMed id 1572646)1, 2, 3, 9 Lanfrancone L.... Lania L. (1992)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Localization of the human HF.10 finger gene on a chromosome region (3p21-22) frequently deleted in human cancers. (PubMed id 2108922)1, 3 Donti E....Pelicci P.G. (1990)
    4. Isolation of cDNAs encoding finger proteins and measurement of the corresponding mRNA levels during myeloid terminal differentiation. (PubMed id 3380682)1, 2 Pannuti A....Lania L. (1988)
    5. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    6. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (2010)
    7. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
    8. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7584 HGNC: 13099 AceView: ZNF35 Ensembl:ENSG00000169981 euGenes: HUgn7584
    ECgene: ZNF35 H-InvDB: ZNF35

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF35 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZNF35 gene:
    Search GeneIP for patents involving ZNF35

    GeneCards and IP:
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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