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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF347 Gene

protein-coding   GIFtS: 49
GCID: GC19M053627

Zinc Finger Protein 347

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 3471 2
Zinc Finger Protein 11112 3
ZNF11112 3
Zinc Finger 11112

External Ids:    HGNC: 164471   Entrez Gene: 846712   Ensembl: ENSG000001979377   UniProtKB: Q96SE73   

Export aliases for ZNF347 gene to outside databases

Previous GC identifers: GC19M054273 GC19M054002 GC19M058085 GC19M058103 GC19M058261 GC19M058334 GC19M053642 GC19M049965


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZNF347 Gene: 
ZNF347 (zinc finger protein 347) is a protein-coding gene. Diseases associated with ZNF347 include extramedullary plasmacytoma, and chikungunya, and among its related super-pathways are Gene Expression. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZNF420.

UniProtKB/Swiss-Prot: ZN347_HUMAN, Q96SE7
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NT_011109.16  NC_018930.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF347 gene promoter:
         AP-1   p53   ATF-2   POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   POU3F2   NF-AT4   NF-AT2   NF-AT3   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF347 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF347

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF347


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.42   Ensembl cytogenetic band:  19q13.42   HGNC cytogenetic band: 19q13.3

ZNF347 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF347 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M053627:  view genomic region     (about GC identifiers)

Start:
53,627,325 bp from pter      End:
53,662,328 bp from pter
Size:
35,004 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZN347_HUMAN, Q96SE7 (See protein sequence)
Recommended Name: Zinc finger protein 347  
Size: 839 amino acids; 95770 Da
Subcellular location: Nucleus (Probable)
6/16 PDB 3D structures from and Proteopedia for ZNF347 (see all 16):
2EMA (3D)        2EMP (3D)        2EN4 (3D)        2ENE (3D)        2ENF (3D)        2EOE (3D)    
Secondary accessions: B3KU77 B9EG59 G5E9N4 Q8TCN1
Alternative splicing: 2 isoforms:  Q96SE7-1   Q96SE7-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZNF347: NX_Q96SE7

Explore proteomics data for ZNF347 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96SE7

  • ZNF347 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF347 Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001166145.1  NP_001166146.1  NP_115973.2  

    ENSEMBL proteins: 
     ENSP00000470590   ENSP00000334146   ENSP00000471712   ENSP00000469338   ENSP00000470499  
     ENSP00000471825   ENSP00000405218  
    Reactome Protein details: Q96SE7
    Human Recombinant Protein Products for ZNF347: 
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    Cloud-Clone Corp. Proteins for ZNF347 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    ZNF347 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR001909 Krueppel-associated_box
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96SE7

    ProtoNet protein and cluster: Q96SE7

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN347_HUMAN, Q96SE7
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 20 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF347 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN347_HUMAN, Q96SE7
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZNF347 for ontologies           About GeneDecksing


    Animal Models:
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for ZNF347 
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    SwitchGear 3'UTR luciferase reporter plasmidZNF347 3' UTR sequence
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for ZNF347 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Generic Transcription Pathway
    Generic Transcription Pathway0.47
    Gene Expression0.47

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    2        Reactome Pathways for ZNF347
        Generic Transcription Pathway
    Gene Expression



    ZNF347 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF347

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    5/8 Interacting proteins for ZNF347 (Q96SE73 ENSP000003341464) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DDX24Q9GZR73I2D: score=1 
    GIT1Q9Y2X73I2D: score=1 
    KAT7O952513I2D: score=1 
    LPLP068583I2D: score=1 
    PHYHIPQ925613I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    ZNF347 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF347 (ZN347)

    Search CenterWatch for drugs/clinical trials and news about ZNF347 / ZN347

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF347 gene (3 alternative transcripts): 
    NM_001172674.1  NM_001172675.1  NM_032584.2  

    Unigene Cluster for ZNF347:

    Zinc finger protein 347
    Hs.467239  [show with all ESTs]
    Unigene Representative Sequence: NM_001172674
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000601804 ENST00000334197(uc002qbb.2 uc010eql.2) ENST00000601469
    ENST00000597183 ENST00000595967 ENST00000595710 ENST00000599096 ENST00000452676(uc002qbc.2)

    miRNA
    Products:
         
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    8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate ZNF347 (see all 9):
    hsa-miR-98 hsa-let-7d hsa-let-7c hsa-let-7i hsa-let-7e hsa-let-7g hsa-let-7b hsa-let-7a
    SwitchGear 3'UTR luciferase reporter plasmidZNF347 3' UTR sequence
    Inhib. RNA
    Products:
         
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    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF347

    Additional mRNA sequence: 

    AK095593.1 AK096623.1 AK289994.1 AK314603.1 AL713691.1 AY029765.1 BC002938.2 BC015611.2 
    BC136255.1 BC143412.1 D70832.1 

    7 DOTS entries:

    DT.95311586  DT.309592  DT.121462242  DT.99970455  DT.121462243  DT.121462333  DT.100677874 

    24/35 AceView cDNA sequences (see all 35):

    AL713691 AY029765 AK095593 H93450 AI366675 NM_032584 AA349969 BX956633 
    AA776564 AW517947 AA978292 BG774402 AA904816 BC015611 AI538580 CA439798 
    BV205561 BM931649 BE900678 AK096623 CD634162 BX102826 BC002938 BX477121 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF347    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6a · 6b · 6c
    SP1:                          -                 -     -                                 
    SP2:                                            -     -                                 
    SP3:                                            -     -     -                           
    SP4:              -           -                                                         
    SP5:              -           -                                                         


    ECgene alternative splicing isoforms for ZNF347

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF347 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGTTCAAGTA
    ZNF347 Expression
    About this image


    See ZNF347 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF347

    SOURCE GeneReport for Unigene cluster: Hs.467239
        SABiosciences Custom PCR Arrays for ZNF347
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for ZNF347 gene from 1/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp511 , 5 zinc finger protein 511, 5 61.8(n)1
    50.41(a)1
      17 (11.40 cM)5
    227091  NM_009558.31  NP_033584.31 
     214503525 


    ENSEMBL Gene Tree for ZNF347 (if available)
    TreeFam Gene Tree for ZNF347 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF347 gene
    ZNF4202  ZNF780A2  ZNF6652  ZNF724P2  ZNF72  ZNF232  ZNF4322  ZNF33A2  
    ZNF2342  ZNF302  ZNF5732  ZNF4292  ZNF5402  ZNF2512  ZNF6052  ZNF842  
    ZNF1892  ZNF5712  ZNF6302  ZNF932  ZNF162  ZNF2832  ZNF4842  ZNF1352  
    ZNF1842  ZNF585B2  ZNF412  ZNF6152  ZNF5692  ZNF4702  
    18/520 SIMAP similar genes for ZNF347 using alignment to 6 protein entries:     ZN347_HUMAN (see all proteins) (see all similar genes):
    ZNF616    ZNF78L1    ZFS-4    ZNF320    ZNF519    ZNF534
    kr-znf3    ZNF559    ZNF844    DKFZp686B16128    HZF30    ZFS-1
    ZNF232    ZNF625    ZNF283    ZNF331    DKFZp762K012    ZNF177

    ZNF347 for paralogs           About GeneDecksing


    4 Pseudogenes.org Pseudogenes for ZNF347
    PGOHUM00000239509 PGOHUM00000234395 PGOHUM00000259423 PGOHUM00000263112


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/560 SNPs in ZNF347 are shown (see all 560)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs72472071,2
    C,A--53641476(+) gatccA/Gcctgc 3 -- int10--------
    rs16619331,2
    C,F,A,H--53641902(+) TTACAT/GTTTCC 3 -- int117Minor allele frequency- G:0.09NS EA NA CSA 1908
    rs1842792451,2
    --53641935(+) AAAGAA/CAAAAA 3 -- int10--------
    rs765631901,2
    F--53641963(+) CCAACC/TTAAAA 3 -- ut311Minor allele frequency- T:0.50NA 4
    rs1898377121,2
    --53642041(+) AAAGAA/TTGTGA 3 -- ut310--------
    rs2017073141,2
    --53642074(+) CGTTG-/AATTTT 3 -- ut310--------
    rs10553491,2
    C,F,O,H--53642075(+) GTTGAA/TTTTTT 3 -- ut319Minor allele frequency- T:0.10NS NA MN WA 682
    rs10553461,2
    C,F,A,H--53642084(+) TTTTTG/AGCAAA 3 -- ut3112Minor allele frequency- A:0.13MN NA WA EA 560
    rs104254871,2
    C,F,A,H--53642093(+) AAACAT/GTATGT 3 -- ut317Minor allele frequency- G:0.04NS EA WA NA 534
    rs1510274461,2
    C--53642123(+) AAACTA/GTAGCA 3 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF347 (53627325 - 53662328 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for ZNF347:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2718787CNV Deletion23290073
    nsv428370CNV Loss18775914
    nsv912351CNV Loss21882294
    nsv912350CNV Gain21882294
    nsv912342CNV Gain21882294
    dgv1116e1CNV Complex17122850


    Human Gene Mutation Database (HGMD): ZNF347
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for ZNF347:    About MalaCards
    extramedullary plasmacytoma    chikungunya    plasmacytoma

    1 disease from the University of Copenhagen DISEASES database for ZNF347:
    Chikungunya

    ZNF347 for disorders           About GeneDecksing


    Export disorders for ZNF347 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF347 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZNF347)
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    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    3. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    4. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    9. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 84671 HGNC: 16447 AceView: ZNF347 Ensembl:ENSG00000197937 euGenes: HUgn84671
    ECgene: ZNF347 H-InvDB: ZNF347

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF347 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF347 gene:
    Search GeneIP for patents involving ZNF347

    GeneCards and IP:
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