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ZNF330 Gene

protein-coding   GIFtS: 48
GCID: GC04P142142

Zinc Finger Protein 330

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 3301 2
NOA362 3 5
Nucleolar Autoantigen 362 3
Nucleolar Cysteine-Rich Protein2 3
HSA65912
Zinc Finger Autoantigen 3302

External Ids:    HGNC: 154621   Entrez Gene: 273092   Ensembl: ENSG000001094457   OMIM: 6095505   UniProtKB: Q9Y3S23   

Export aliases for ZNF330 gene to outside databases

Previous GC identifers: GC04P142719 GC04P142499 GC04P142361 GC04P137871


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF330 Gene:
ZNF330 (zinc finger protein 330) is a protein-coding gene.

Gene Wiki entry for ZNF330 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NC_018915.2  NT_016354.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF330 gene promoter:
         NF-1   AML1a   MyoD   HNF-3beta   NF-AT   C/EBPalpha   CHOP-10   Pax-3   HFH-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF330 promoter sequence
   Search Chromatin IP Primers for ZNF330

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF330


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q31.21   Ensembl cytogenetic band:  4q31.21   HGNC cytogenetic band: 4q31.21

ZNF330 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF330 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P142142:  view genomic region     (about GC identifiers)

Start:
142,142,041 bp from pter      End:
142,155,851 bp from pter
Size:
13,811 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN330_HUMAN, Q9Y3S2 (See protein sequence)
Recommended Name: Zinc finger protein 330  
Size: 320 amino acids; 36201 Da
Secondary accessions: B2RDA3

Explore the universe of human proteins at neXtProt for ZNF330: NX_Q9Y3S2

Explore proteomics data for ZNF330 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys44, Lys113, Lys255
  • Modification sites at PhosphoSitePlus

  • See ZNF330 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_055302.1  
    ENSEMBL proteins: 
     ENSP00000262990   ENSP00000422574   ENSP00000422599   ENSP00000423217   ENSP00000422966  
     ENSP00000422251   ENSP00000427201   ENSP00000397397  

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    Cloud-Clone Corp. Proteins for ZNF330

     
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    antibodies-online proteins for ZNF330 (2 products) 

     
    antibodies-online peptides for ZNF330

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    Cloud-Clone Corp. ELISAs for ZNF330
    Cloud-Clone Corp. CLIAs for ZNF330
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    antibodies-online kits for ZNF330 (6 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    1 InterPro protein domain:
     IPR010531 NOA36

    Graphical View of Domain Structure for InterPro Entry Q9Y3S2

    ProtoNet protein and cluster: Q9Y3S2

    1 Blocks protein domain: IPB010531 NOA36

    UniProtKB/Swiss-Prot: ZN330_HUMAN, Q9Y3S2
    Similarity: Belongs to the NOA36 family


    Find genes that share domains with ZNF330           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding IEA--
    GO:0046872metal ion binding NAS10593942
         
    Find genes that share ontologies with ZNF330           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF330

    miRNA
    Products:
        
    miRTarBase miRNAs that target ZNF330:
    hsa-mir-877-3p (MIRT037087)

    Block miRNA regulation of human, mouse, rat ZNF330 using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate ZNF330:
    hsa-miR-3647-3p
    SwitchGear 3'UTR luciferase reporter plasmidZNF330 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZNF330

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN330_HUMAN, Q9Y3S2: Nucleus. Nucleus, nucleolus. Chromosome, centromere. Note=Predominantly expressed in the
    nucleolus. In mitosis associated with centromeres and concentrated at the midbody in cytokinesis
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2
    cytoskeleton1
    mitochondrion1

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000775chromosome, centromeric region IDA10593942
    GO:0005634nucleus ----
    GO:0005730nucleolus IDA10593942
    GO:0030496midbody IDA10593942

    Find genes that share ontologies with ZNF330           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF330
    Interactions:

        Search GeneGlobe Interaction Network for ZNF330

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for ZNF330 (Q9Y3S21, 3 ENSP000002629904) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ZNF408Q9H9D41, 3, ENSP000003096064EBI-373456,EBI-347633 I2D: score=3 STRING: ENSP00000309606
    C2orf69Q8N8R53I2D: score=5 
    PTCH1Q136353I2D: score=3 
    UBCENSP000003448184STRING: ENSP00000344818
    REXO4ENSP000003610104STRING: ENSP00000361010
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with ZNF330           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF330 (ZN330)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF330 gene: 
    NM_014487.4  

    Unigene Cluster for ZNF330:

    Zinc finger protein 330
    Hs.120766  [show with all ESTs]
    Unigene Representative Sequence: NM_014487
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000514826 ENST00000262990(uc003iiq.4 uc011chl.2) ENST00000507532
    ENST00000512809 ENST00000515453 ENST00000503649 ENST00000512738 ENST00000506302
    ENST00000421169
    miRNA
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    Block miRNA regulation of human, mouse, rat ZNF330 using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate ZNF330:
    hsa-miR-3647-3p
    SwitchGear 3'UTR luciferase reporter plasmidZNF330 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for ZNF330
    Predesigned siRNA for gene silencing in human, mouse, rat ZNF330
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF330
      QuantiFast Probe-based Assays in human, mouse, rat ZNF330

    Additional mRNA sequence: 

    AJ006591.2 AK002106.1 AK223609.1 AK294089.1 AK315463.1 BC004421.1 

    11 DOTS entries:

    DT.107606  DT.408098  DT.40308706  DT.121249958  DT.92007961  DT.100776293  DT.121249948  DT.121249953 
    DT.121249968  DT.95253804  DT.40120242 

    Selected AceView cDNA sequences (see all 108):

    AI934167 AI004972 AI399658 BF001698 BQ721470 BF223168 BE780150 AK002106 
    BX103113 BC004421 AA367315 AU138473 AI446246 AU104440 BX499269 BF725943 
    AI680581 CD244602 AI394033 BX389452 AI867867 AA631102 BE463491 CD515843 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF330 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF330 Expression
    About this image

    ZNF330 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF330 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.120766

    UniProtKB/Swiss-Prot: ZN330_HUMAN, Q9Y3S2
    Tissue specificity: Widely expressed. Higher expression seen in heart and skeletal muscle

        Custom PCR Arrays for ZNF330
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF330

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZNF330 gene from Selected species (see all 17)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp3301 , 5 zinc finger protein 3301, 5 89.66(n)1
    95.89(a)1
      8 (39.58 cM)5
    309321  NM_145600.11  NP_663575.11 
     827636205 
    chicken
    (Gallus gallus)
    Aves ZNF3301 zinc finger protein 330 82.29(n)
    89.69(a)
      422453  NM_001277828.1  NP_001264757.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZNF3306
    zinc finger protein 330
    88(a)
    1 ↔ 1
    5(119412299-119431810)
    African clawed frog
    (Xenopus laevis)
    Amphibia noa36-pending-prov2 nucleolar cysteine-rich protein 78.81(n)    BC044969.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.148802 Danio rerio mRNA similar to nucleolar cysteine-rich more 76.89(n)    BC046062.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Noa361 Noa36 62.32(n)
    68.58(a)
      43384  NM_143365.3  NP_651622.2 


    ENSEMBL Gene Tree for ZNF330 (if available)
    TreeFam Gene Tree for ZNF330 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF330 (see all 335)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1118995011,2
    C--142140071(+) TGCCAT/AATATC 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs49565281,2
    C,F,A--142140167(+) AATTAC/TTAGAG 1 -- us2k16Minor allele frequency- T:0.41NA WA EA 364
    rs1137776451,2
    C,F--142140261(+) GAGAGT/AGCAAT 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs1402031631,2
    --142140384(+) TTGTCA/GTTTTA 1 -- us2k10--------
    rs1502358331,2
    --142140525(+) GTGAAC/TAGTAA 1 -- us2k10--------
    rs1458311741,2
    --142140610(+) TCCCTC/TTTCCT 1 -- us2k10--------
    rs1490010311,2
    --142140756(+) CATAGA/GTGTAT 1 -- us2k10--------
    rs49565291,2
    C,F,A--142140783(+) tccccT/Caactc 1 -- us2k16Minor allele frequency- C:0.42WA CSA NA EA 364
    rs1471257671,2
    C--142140799(+) AACTCG/TGAAGG 1 -- us2k10--------
    rs1459598581,2
    C--142140871(+) TGCTC-/AATCCT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF330 (142142041 - 142155851 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF330:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv1680e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing ZNF330
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF330

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 609550    OMIM disorders: --


    Find genes that share disorders with ZNF330           About GenesLikeMe

    Genetic Association Database (GAD): ZNF330

    Export disorders for ZNF330 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF330 gene, integrated from 10 sources (see all 22):
    (articles sorted by number of sources associating them with ZNF330)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a zinc finger autoantigen transiently associated with interphase nucleolus and mitotic centromeres and midbodies. Orthologous proteins with nine CXXC motifs highly conserved from nematodes to humans. (PubMed id 10593942)1, 2, 3 Bolivar J.... Valdivia M.M. (J. Biol. Chem. 1999)
    2. Genome-wide association study of conduct disorder symptomatology. (PubMed id 20585324)1, 4 Dick D.M....Bierut L. (Mol. Psychiatry 2011)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Genomic structure and chromosome location of the human gene encoding the zinc finger autoantigen ZNF330. (PubMed id 11528117)1, 3 BolA-var J....Valdivia M.M. (Cytogenet. Cell Genet. 2001)
    6. NOA36 protein contains a highly conserved nucleolar localization signal capable of directing functional proteins to the nucleolus, in mammalian cells. (PubMed id 23516598)1 de Melo I.S....BolA-var J. (PLoS ONE 2013)
    7. Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (J. Proteome Res. 2012)
    8. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
    9. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    10. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 27309 HGNC: 15462 AceView: ZNF330 Ensembl:ENSG00000109445 euGenes: HUgn27309
    ECgene: ZNF330 H-InvDB: ZNF330

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF330 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF330 gene:
    Search GeneIP for patents involving ZNF330

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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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