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ZNF32 Gene

protein-coding   GIFtS: 51
GCID: GC10M044139

Zinc Finger Protein 32

(Previous name: zinc finger protein 32 (KOX 30))
Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 321 2
KOX302 3 5
Zinc Finger Protein 32 (KOX 30)1 2
Zinc Finger Protein KOX302 3
C2H2-5462 3

External Ids:    HGNC: 130951   Entrez Gene: 75802   Ensembl: ENSG000001697407   OMIM: 1945395   UniProtKB: P170413   

Export aliases for ZNF32 gene to outside databases

Previous GC identifers: GC10M043428 GC10M043607 GC10M043914 GC10M043423 GC10M043338 GC10M043459 GC10M040666


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF32 Gene:
ZNF32 (zinc finger protein 32) is a protein-coding gene. Diseases associated with ZNF32 include tuberculous meningitis, and viral encephalitis. An important paralog of this gene is ZFP1.

UniProtKB/Swiss-Prot: ZNF32_HUMAN, P17041
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000010.11  NT_030059.14  NC_018921.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF32 gene promoter:
         FOXO4   LyF-1   HNF-3beta   LCR-F1   C/EBPalpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF32 promoter sequence
   Search Chromatin IP Primers for ZNF32

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF32


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q22-q25   Ensembl cytogenetic band:  10q11.21   HGNC cytogenetic band: 10q22-q25

ZNF32 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF32 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M044139:  view genomic region     (about GC identifiers)

Start:
44,139,307 bp from pter      End:
44,144,326 bp from pter
Size:
5,020 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ZNF32_HUMAN, P17041 (See protein sequence)
Recommended Name: Zinc finger protein 32  
Size: 273 amino acids; 31029 Da
5 PDB 3D structures from and Proteopedia for ZNF32:
2EPC (3D)        2EPT (3D)        2EPU (3D)        2YTA (3D)        2YTB (3D)    
Secondary accessions: Q92951

Explore the universe of human proteins at neXtProt for ZNF32: NX_P17041

Explore proteomics data for ZNF32 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF32 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001005368.1  NP_008904.1  

    ENSEMBL proteins: 
     ENSP00000363556   ENSP00000379143  

    ZNF32 Human Recombinant Protein Products:

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    Cloud-Clone Corp. CLIAs for ZNF32


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P17041

    ProtoNet protein and cluster: P17041

    UniProtKB/Swiss-Prot: ZNF32_HUMAN, P17041
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 7 C2H2-type zinc fingers


    ZNF32 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZNF32_HUMAN, P17041
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF32:
    zinc finger protein 32 (KOX30) (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0046872metal ion binding IEA--
         
    ZNF32 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF32:
     Synthetic lethal with Ras 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF32
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    2 qRT-PCR Assays for microRNAs that regulate ZNF32:
    hsa-miR-641 hsa-miR-3617
    SwitchGear 3'UTR luciferase reporter plasmidZNF32 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZNF32

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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF32

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZNF32_HUMAN, P17041: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    ZNF32 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF32
    Interactions:

        Search GeneGlobe Interaction Network for ZNF32

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for ZNF32 (P170413 ENSP000003635564) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GRB2P629933, ENSP000003390074I2D: score=1 STRING: ENSP00000339007
    POT1ENSP000003502494STRING: ENSP00000350249
    ULK2ENSP000003548774STRING: ENSP00000354877
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    ZNF32 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF32



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZNF32 gene (2 alternative transcripts): 
    NM_001005368.1  NM_006973.2  

    Unigene Cluster for ZNF32:

    Zinc finger protein 32
    Hs.522885  [show with all ESTs]
    Unigene Representative Sequence: NM_001005368
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000374433(uc001jbc.3) ENST00000485351 ENST00000395797(uc001jbb.3)

    Congresses - knowledge worth sharing:
    European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

    miRNA
    Products:
         
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    2 qRT-PCR Assays for microRNAs that regulate ZNF32:
    hsa-miR-641 hsa-miR-3617
    SwitchGear 3'UTR luciferase reporter plasmidZNF32 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for ZNF32
    Predesigned siRNA for gene silencing in human, mouse, rat ZNF32
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    GenScript: all cDNA clones in your preferred vector (see all 2): ZNF32 (NM_001005368)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF32
    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF32
      QuantiFast Probe-based Assays in human, mouse, rat ZNF32

    Additional mRNA sequence: 

    AK312132.1 BC022842.1 U69645.1 X52361.1 

    8 DOTS entries:

    DT.416376  DT.92426666  DT.92426671  DT.97787564  DT.121218147  DT.40116710  DT.95169059  DT.95193196 

    Selected AceView cDNA sequences (see all 130):

    AI338434 BU167609 N93033 CA440617 AW007761 AW592850 BI766614 AI190521 
    CD674403 CD674404 CR624115 BM127643 AI056412 BC022842 AA612791 CF528084 
    AW248726 CR626696 BM822199 BM718428 BQ919297 AA830042 AI621297 AL534873 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF32    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d
    SP1:                    -     -           -     -                           
    SP2:                    -     -           -     -                           
    SP3:                          -           -     -                           
    SP4:                    -     -                                             
    SP5:                                            -                           


    ECgene alternative splicing isoforms for ZNF32

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF32 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAAAATCCA
    ZNF32 Expression
    About this image


    ZNF32 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 3 entries
             Metencephalon
     
     Brain (Nervous System)
             Medulla Oblongata
    ZNF32 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF32 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.522885
        Custom PCR Arrays for ZNF32
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZNF32 gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp6371 , 5 zinc finger protein 6371, 5 87.99(n)1
    95.59(a)1
      6 (55.59 cM)5
    2323371  NM_177684.21  NP_808352.11 
     1178411805 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003328641 gastrula zinc finger protein XlCGF57.1-like 52.02(n)
    43.93(a)
      100332864  XM_005171697.1  XP_005171754.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta BG:DS02740.83 nucleic acid binding 33(a)     --
    worm
    (Caenorhabditis elegans)
    Secernentea M03D4.46
    Protein M03D4.4, isoform a (M03D4.4) mRNA, complet...
    15(a)
    1 → many
    IV(6121778-6127302) WBGene00019751


    ENSEMBL Gene Tree for ZNF32 (if available)
    TreeFam Gene Tree for ZNF32 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF32 gene
    ZFP12  
    Selected SIMAP similar genes for ZNF32 using alignment to 1 protein entry:     ZNF32_HUMAN(see all similar genes):
    ZNF78L1    ZNF484    ZNF56    ZNF180    ZNF268    ZFP1
    ZFP37    ZNF300    ZNF544    ZNF674    ZNF761    ZNF765
    ZNF84    ZNF253    DKFZp686B16128    DKFZp686K03205    ZFP28    ZKSCAN8

    ZNF32 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF32:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2437420CNV Deletion19546169

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF32
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF32

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 194539    OMIM disorders: --

    4 diseases for ZNF32:    
    About MalaCards
    tuberculous meningitis    viral encephalitis    meningitis    encephalitis

    1 disease from the University of Copenhagen DISEASES database for ZNF32:
    Viral encephalitis

    ZNF32 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZNF32

    Export disorders for ZNF32 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF32 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF32)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (Nature 2004)
    3. C2H2-546: a zinc finger protein differentially expressed in HTLV-1 infected T cells. (PubMed id 9475118)1, 2 Drew P.D.... Becker K.G. (J. Neurovirol. 1997)
    4. Multiple genes encoding zinc finger domains are expressed in human T cells. (PubMed id 2288909)1, 2 Thiesen H.-J. (New Biol. 1990)
    5. Human zinc finger gene ZNF23 (Kox16) maps to a zinc finger gene cluster on chromosome 16q22, and ZNF32 (Kox30) to chromosome region 10q23-q24. (PubMed id 8500793)1, 9 Cannizzaro L.A....Thiesen H.J. (Hum. Genet. 1993)
    6. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    7. Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. (PubMed id 17474147)1 Wu C....Li S.S. (Proteomics 2007)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    9. Characterization and mapping of human genes encoding zinc finger proteins. (PubMed id 1946370)1 Bray P.L.... Dawid I.B. (Proc. Natl. Acad. Sci. U.S.A. 1991)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7580 HGNC: 13095 AceView: ZNF32 Ensembl:ENSG00000169740 euGenes: HUgn7580
    ECgene: ZNF32 H-InvDB: ZNF32

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for ZNF32 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF32 gene:
    Search GeneIP for patents involving ZNF32

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