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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF317 Gene

protein-coding   GIFtS: 54
GCID: GC19P009251

Zinc Finger Protein 317

  Search for ZNF317
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 3171 2
KRAB-Containing Zinc Finger Protein 3172
KIAA15883

External Ids:    HGNC: 135071   Entrez Gene: 576932   Ensembl: ENSG000001308037   OMIM: 6138645   UniProtKB: Q96PQ63   

Export aliases for ZNF317 gene to outside databases

Previous GC identifers: GC19P009372 GC19P009473 GC19P009096 GC19P009113 GC19P009115 GC19P009116 GC19P008832


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZNF317 Gene: 
ZNF317 (zinc finger protein 317) is a protein-coding gene. Among its related super-pathways are Gene Expression. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZBTB40.

UniProtKB/Swiss-Prot: ZN317_HUMAN, Q96PQ6
Function: May function as a transcription factor. May play an important role in erythroid maturation and lymphoid
proliferation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.2  NT_011295.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF317 gene promoter:
         c-Fos   AP-1   JunB   FosB   Fra-1   LUN-1   CREB   JunD   PPAR-gamma2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF317 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF317

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF317


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13

ZNF317 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF317 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P009251:  view genomic region     (about GC identifiers)

Start:
9,251,056 bp from pter      End:
9,274,100 bp from pter
Size:
23,045 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZN317_HUMAN, Q96PQ6 (See protein sequence)
Recommended Name: Zinc finger protein 317  
Size: 595 amino acids; 67959 Da
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=BAB13414.1; Type=Erroneous initiation;
Secondary accessions: Q6DCA9 Q96PM0 Q96PM1 Q96PT2 Q9HCI4
Alternative splicing: 4 isoforms:  Q96PQ6-1   Q96PQ6-2   Q96PQ6-3   Q96PQ6-4   

Explore the universe of human proteins at neXtProt for ZNF317: NX_Q96PQ6

Explore proteomics data for ZNF317 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96PQ6

  • ZNF317 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF317 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001177720.1  NP_065984.3  

    ENSEMBL proteins: 
     ENSP00000247956   ENSP00000353554   ENSP00000465780   ENSP00000468213  
    Reactome Protein details: Q96PQ6
    Human Recombinant Protein Products for ZNF317: 
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    Novus Biologicals ZNF317 Lysates
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    Browse Sino Biological Cell Lysates 
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    Cloud-Clone Corp. Proteins for ZNF317 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    ZNF317 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR001909 Krueppel-associated_box
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96PQ6

    ProtoNet protein and cluster: Q96PQ6

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: ZN317_HUMAN, Q96PQ6
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 13 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF317 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN317_HUMAN, Q96PQ6
    Function: May function as a transcription factor. May play an important role in erythroid maturation and lymphoid
    proliferation

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZNF317 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF317:
     Decreased viability with pacli 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for ZNF317 
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    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for ZNF317 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Generic Transcription Pathway
    Generic Transcription Pathway0.47
    Gene Expression0.47

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    2        Reactome Pathways for ZNF317
        Generic Transcription Pathway
    Gene Expression



    ZNF317 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF317

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    2 Interacting proteins for ZNF317 (Q96PQ63 ENSP000002479564) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SUMO1P631653, ENSP000003760764I2D: score=1 STRING: ENSP00000376076
    --Q154143I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    ZNF317 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF317 (ZN317)

    Search CenterWatch for drugs/clinical trials and news about ZNF317 / ZN317

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF317 gene (2 alternative transcripts): 
    NM_001190791.1  NM_020933.4  

    Unigene Cluster for ZNF317:

    Zinc finger protein 317
    Hs.465829  [show with all ESTs]
    Unigene Representative Sequence: AL834126
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000247956(uc002mku.3 uc002mkv.3 uc002mkx.3) ENST00000360385(uc002mkw.3 uc002mky.3)
    ENST00000591278 ENST00000419608(uc010xkm.2) ENST00000590152 ENST00000591508

    miRNA
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    3 QIAGEN miScript miRNA Assays for microRNAs that regulate ZNF317:
    hsa-miR-433 hsa-miR-3166 hsa-miR-544
    SwitchGear 3'UTR luciferase reporter plasmidZNF317 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AB046808.1 AF148135.1 AF275255.1 AF307096.1 AF307097.1 AK056205.1 AK056570.1 AK304151.1 
    AK304871.1 AK314560.1 AL834126.2 BC001685.2 BC009367.2 BC078154.1 

    10 DOTS entries:

    DT.452551  DT.95082359  DT.100814707  DT.100814703  DT.100814704  DT.100814705  DT.91962175  DT.95082369 
    DT.121425216  DT.75102127 

    24/162 AceView cDNA sequences (see all 162):

    CA306679 BG389507 BP348545 AI919474 BM985165 BQ233057 AW403270 BM477135 
    AA548484 BE298424 AA827639 BM755026 BG106746 AB046808 BF813143 BC009367 
    BP335897 BE278533 AK056570 AF307096 AA349254 AF307097 BU508087 AK056205 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF317 (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d
    SP1:                                      -           -                       -                                       
    SP2:                                      -                                   -                                       
    SP3:                                      -           -     -     -           -                                       
    SP4:                                -     -           -                                                               
    SP5:                                      -           -     -     -                                                   


    ECgene alternative splicing isoforms for ZNF317

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF317 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGAAAAAATA
    ZNF317 Expression
    About this image


    See ZNF317 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF317

    SOURCE GeneReport for Unigene cluster: Hs.465829

    UniProtKB/Swiss-Prot: ZN317_HUMAN, Q96PQ6
    Tissue specificity: Isoform 1 and isoform 2 are ubiquitously expressed. Isoform 3 and isoform 4 are expressed only
    in lymphocytes, spleen and lung

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF317 gene from 2/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp3171 , 5 zinc finger protein 3171, 5 79.82(n)1
    84.78(a)1
      9 (7.35 cM)5
    2447131  NM_172918.41  NP_766506.41 
     196412245 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    42(a)
    possible ortholog
    GL344882.1(1643-15461)


    ENSEMBL Gene Tree for ZNF317 (if available)
    TreeFam Gene Tree for ZNF317 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF317 gene
    ZBTB402  
    18/468 SIMAP similar genes for ZNF317 using alignment to 3 protein entries:     ZN317_HUMAN (see all proteins) (see all similar genes):
    ZNF705A    FIK    ZNF559    ZFP90    ZNF138    ZNF846
    ZNF235    ZNF793    ZNF596    KRBOX4    ZNF208    ZNF274
    ZNF720    ZNF675    ZNF738    ZNF350    ZNF625    ZNF577

    ZNF317 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZNF317
    PGOHUM00000249746


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/708 SNPs in ZNF317 are shown (see all 708)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1896432661,2
    --9249084(+) GCATGC/TCTGTA 3 -- us2k10--------
    rs2006880391,2
    C--9249216(+) AAAAG-/AAAAAA 3 -- us2k10--------
    rs1407417761,2
    --9249259(+) GGCGAC/GGGCAT 3 -- us2k10--------
    rs621036111,2
    C--9249266(+) GCATCA/GAGCAA 3 -- us2k14Minor allele frequency- G:0.20CSA WA NA EA 360
    rs764292441,2
    C--9249360(+) ACAACA/GGAACT 3 -- us2k14Minor allele frequency- G:0.20CSA WA NA EA 360
    rs1812914911,2
    --9249728(+) TGTAAC/TATATG 3 -- us2k10--------
    rs1843258301,2
    --9249737(+) TGTATA/GTAATA 3 -- us2k10--------
    rs1891011281,2
    --9249761(+) ACATAC/TTATAT 3 -- us2k10--------
    rs81107571,2
    C,A--9249840(+) tattaC/Tgttat 3 -- us2k13Minor allele frequency- T:0.20NA WA 240
    rs81107711,2
    C,A--9249877(+) aatatC/Tttata 3 -- us2k1 tfbs34Minor allele frequency- T:0.32NA CSA WA 242

    HapMap Linkage Disequilibrium report for ZNF317 (9251056 - 9274100 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for ZNF317:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv509720CNV Insertion20534489
    nsv2411CNV Loss18451855
    nsv911021CNV Loss21882294
    esv27422CNV Loss19812545
    nsv138312CNV Loss16902084
    nsv2408CNV Loss18451855
    nsv911020CNV Gain21882294
    esv275448CNV Gain+Loss21479260

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZNF317 for disorders           About MalaCards
    OMIM gene information: 613864    OMIM disorders: --


    ZNF317 for disorders           About GeneDecksing


    Export disorders for ZNF317 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF317 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZNF317)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning and characterization of a KRAB-containing zinc finger protein, ZNF317, and its isoforms. (PubMed id 11688974)1, 2, 3, 9 Takashima H....Sawada K. (2001)
    2. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)1, 2, 3 Nagase T.... Ohara O. (2000)
    3. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    5. Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics. (PubMed id 17000644)1 Vertegaal A.C....Lamond A.I. (2006)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57693 HGNC: 13507 AceView: ZNF317 Ensembl:ENSG00000130803 euGenes: HUgn57693
    ECgene: ZNF317 H-InvDB: ZNF317

    (According to HUGE)
    About This Section
    HUGE: KIAA1588

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF317 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZNF317 gene:
    Search GeneIP for patents involving ZNF317

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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