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Aliases for ZNF300P1 Gene

Aliases for ZNF300P1 Gene

  • Zinc Finger Protein 300 Pseudogene 1 2 3 5
  • Zinc Finger Protein 300 Pseudogene 1 (Functional) 2

External Ids for ZNF300P1 Gene

Previous GeneCards Identifiers for ZNF300P1 Gene

  • GC05M150309
  • GC05M145455

Summaries for ZNF300P1 Gene

GeneCards Summary for ZNF300P1 Gene

ZNF300P1 (Zinc Finger Protein 300 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF300P1 Gene

Genomics for ZNF300P1 Gene

Regulatory Elements for ZNF300P1 Gene

Enhancers for ZNF300P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F150176 1.3 Ensembl ENCODE 65.9 +763.5 763527 12.8 HDGF ARNT ZNF493 ZFP64 ZNF2 YY1 ZNF121 FOS ZNF202 JUNB ZNF300 HMGXB3 ZNF300P1 RPL7P1 TIGD6 RPS20P4 RPS14 PDGFRB SLC6A7 SMIM3
GH05F150904 1.1 ENCODE 70.3 +41.6 41553 1.5 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF263 SP3 NFYC ZNF300P1 SMIM3 HMGXB3 ZNF300 PDGFRB RPL7P1 GPX3 RPS14 ENSG00000272112 TIGD6
GH05F150581 1.3 Ensembl ENCODE 51.4 +362.5 362479 5.5 HDGF PKNOX1 MLX CREB3L1 ZFP64 SIN3A DMAP1 YY1 ZNF207 FOS ZNF300 HMGXB3 ZNF300P1 RPL7P1 TIGD6 ENSG00000248696 LOC100419720 ENSG00000253472 ENSG00000253897 RPS14
GH05F150786 1.4 FANTOM5 Ensembl ENCODE 44.4 +157.2 157230 5.1 BCOR CTCF SUZ12 JUN ZMYM3 SIN3A POLR2A EGR1 EED FOS ZNF300P1 DCTN4 RBM22 RPL7P1 TNIP1 SMIM3 CCDC69 CD74 IRGM
GH05F149956 1.5 FANTOM5 ENCODE 31.6 +986.9 986935 6.7 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 YY1 ZNF143 HMGXB3 ZNF300 RPL7P1 ZNF300P1 TIGD6 ENSG00000248696 SLC26A2 LOC644762 RPS20P4 RPS14
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF300P1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF300P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001415324 84 1800 TBP CBX3 YY1 FOXK2 POLR2A CREM TCF7L2 HCFC1 BHLHE40 TEAD2

Genomic Location for ZNF300P1 Gene

Chromosome:
5
Start:
150,930,436 bp from pter
End:
150,946,584 bp from pter
Size:
16,149 bases
Orientation:
Minus strand

Genomic View for ZNF300P1 Gene

Genes around ZNF300P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF300P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF300P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF300P1 Gene

Proteins for ZNF300P1 Gene

Post-translational modifications for ZNF300P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF300P1 Gene

Domains & Families for ZNF300P1 Gene

Gene Families for ZNF300P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF300P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF300P1 Gene

Function for ZNF300P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF300P1 Gene

Localization for ZNF300P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF300P1 Gene

Pathways & Interactions for ZNF300P1 Gene

SuperPathways for ZNF300P1 Gene

No Data Available

Interacting Proteins for ZNF300P1 Gene

Gene Ontology (GO) - Biological Process for ZNF300P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF300P1 Gene

Transcripts for ZNF300P1 Gene

mRNA/cDNA for ZNF300P1 Gene

(7) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF300P1 Gene

Zinc finger protein 300 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF300P1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b
SP1:
SP2: -

Relevant External Links for ZNF300P1 Gene

GeneLoc Exon Structure for
ZNF300P1
ECgene alternative splicing isoforms for
ZNF300P1

Expression for ZNF300P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF300P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF300P1 Gene:

ZNF300P1

SOURCE GeneReport for Unigene cluster for ZNF300P1 Gene:

Hs.661876
genes like me logo Genes that share expression patterns with ZNF300P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF300P1 Gene

Orthologs for ZNF300P1 Gene

Evolution for ZNF300P1 Gene

ENSEMBL:
Gene Tree for ZNF300P1 (if available)
TreeFam:
Gene Tree for ZNF300P1 (if available)

No data available for Orthologs for ZNF300P1 Gene

Paralogs for ZNF300P1 Gene

(254) SIMAP similar genes for ZNF300P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF300P1: view

No data available for Paralogs for ZNF300P1 Gene

Variants for ZNF300P1 Gene

Sequence variations from dbSNP and Humsavar for ZNF300P1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10043535 -- 150,946,858(+) GCCAC(C/T)ATGGT upstream-variant-2KB
rs10631879 -- 150,943,411(+) GGACT(-/CCC)CCCAA intron-variant
rs10719367 -- 150,932,296(+) CTGTC(-/T)GAAAA splice-acceptor-variant
rs10875561 -- 150,931,518(+) CCCAG(A/T)GTGAA nc-transcript-variant
rs10875562 -- 150,934,432(+) gatta(A/C)aggca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF300P1 Gene

Variant ID Type Subtype PubMed ID
dgv10114n54 CNV loss 21841781
dgv5817n100 CNV loss 25217958
esv3607174 OTHER inversion 21293372
nsv526742 CNV gain 19592680

Relevant External Links for ZNF300P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF300P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF300P1 Gene

Disorders for ZNF300P1 Gene

Relevant External Links for ZNF300P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF300P1

No disorders were found for ZNF300P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF300P1 Gene

Publications for ZNF300P1 Gene

  1. ZNF300P1 Encodes a lincRNA that regulates cell polarity and is epigenetically silenced in type II epithelial ovarian cancer. (PMID: 24393131) Gloss B. … Samimi G. (Mol. Cancer 2014) 2 3 64
  2. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF300P1 Gene

Sources for ZNF300P1 Gene

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