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Aliases for ZNF3 Gene

Aliases for ZNF3 Gene

  • Zinc Finger Protein 3 2 3 5
  • Zinc Finger Protein HZF3.1 3 4
  • Zinc Finger Protein HF.12 3 4
  • Zinc Finger Protein KOX25 3 4
  • KOX25 3 4
  • C2-H2 Type Zinc Finger Protein 3
  • Zinc Finger Protein 3 (A8-51) 2
  • Zfp113 3
  • A8-51 3
  • HF.12 3
  • PP838 3

External Ids for ZNF3 Gene

Previous GeneCards Identifiers for ZNF3 Gene

  • GC07M098196
  • GC07M099259
  • GC07M099272
  • GC07M099306
  • GC07M099499
  • GC07M099661
  • GC07M094297

Summaries for ZNF3 Gene

GeneCards Summary for ZNF3 Gene

ZNF3 (Zinc Finger Protein 3) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and identical protein binding. An important paralog of this gene is ENSG00000255104.

UniProtKB/Swiss-Prot for ZNF3 Gene

  • Involved in cell differentiation and/or proliferation.

Gene Wiki entry for ZNF3 Gene

Additional gene information for ZNF3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF3 Gene

Genomics for ZNF3 Gene

Regulatory Elements for ZNF3 Gene

Enhancers for ZNF3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H100672 1.4 ENCODE dbSUPER 111 -594.4 -594445 8 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 ZC3H11A MEF2D TRIM4 ZNF3 GIGYF1 SRRT PCOLCE STAG3L5P PPP1R35 ENSG00000242798 AP4M1 ZAN
GH07H100475 1.4 ENCODE dbSUPER 90.2 -395.2 -395207 4 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZSCAN25 TRIM4 GIGYF1 ZNF3 ZNF655 SRRT AP4M1 ENSG00000242798 STAG3L5P PILRA
GH07H099579 1.4 FANTOM5 Ensembl ENCODE 89.5 +502.1 502148 1 ZNF2 ZBTB40 RAD21 ZNF366 ZNF354C ZNF202 ZNF680 ELF4 REST ZNF518A ZSCAN25 TRRAP TRIM4 LOC100131859 ZNF3 ZNF655 ENSG00000242798 STAG3L5P AP4M1 LOC101927550
GH07H100835 1.9 FANTOM5 Ensembl ENCODE dbSUPER 43.3 -754.3 -754288 2 PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 CBX5 ZNF143 SP3 SRRT TRIM4 ZNF3 GIGYF1 STAG3L5P AP4M1 ENSG00000242798 PPP1R35 MEPCE PILRB
GH07H100799 1.6 Ensembl ENCODE dbSUPER 50.4 -721.9 -721897 10 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 DMAP1 ZBTB7B GIGYF1 TRIM4 ZNF3 SRRT STAG3L5P PPP1R35 MOSPD3 PCOLCE ENSG00000242798 EPHB4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF3 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000215736 948 2001 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A ZNF610 GLIS1 NBN

Genomic Location for ZNF3 Gene

Chromosome:
7
Start:
100,063,847 bp from pter
End:
100,082,548 bp from pter
Size:
18,702 bases
Orientation:
Minus strand

Genomic View for ZNF3 Gene

Genes around ZNF3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF3 Gene

Proteins for ZNF3 Gene

  • Protein details for ZNF3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P17036-ZNF3_HUMAN
    Recommended name:
    Zinc finger protein 3
    Protein Accession:
    P17036
    Secondary Accessions:
    • D6W5U0
    • P13683
    • Q9HBR4
    • Q9NNX8
    • Q9NXJ1
    • Q9UC15
    • Q9UC16

    Protein attributes for ZNF3 Gene

    Size:
    446 amino acids
    Molecular mass:
    50916 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF3 Gene

Post-translational modifications for ZNF3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF3 Gene

Domains & Families for ZNF3 Gene

Gene Families for ZNF3 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF3 Gene

Suggested Antigen Peptide Sequences for ZNF3 Gene

Graphical View of Domain Structure for InterPro Entry

P17036

UniProtKB/Swiss-Prot:

ZNF3_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF3: view

Function for ZNF3 Gene

Molecular function for ZNF3 Gene

GENATLAS Biochemistry:
zinc finger protein 3 (A8-51)
UniProtKB/Swiss-Prot Function:
Involved in cell differentiation and/or proliferation.

Phenotypes From GWAS Catalog for ZNF3 Gene

Gene Ontology (GO) - Molecular Function for ZNF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 2288909
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0005515 protein binding IPI 18255255
GO:0008270 zinc ion binding NAS 2288909
GO:0042802 identical protein binding IPI 18255255
genes like me logo Genes that share ontologies with ZNF3: view

Phenotypes for ZNF3 Gene

genes like me logo Genes that share phenotypes with ZNF3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF3 Gene

Localization for ZNF3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF3 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ZNF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IC,IEA 2288909
genes like me logo Genes that share ontologies with ZNF3: view

Pathways & Interactions for ZNF3 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF3: view

Pathways by source for ZNF3 Gene

2 Reactome pathways for ZNF3 Gene

Gene Ontology (GO) - Biological Process for ZNF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
GO:0007275 multicellular organism development IEA --
GO:0030154 cell differentiation IEA --
GO:0045321 leukocyte activation NAS 2288909
genes like me logo Genes that share ontologies with ZNF3: view

No data available for SIGNOR curated interactions for ZNF3 Gene

Drugs & Compounds for ZNF3 Gene

No Compound Related Data Available

Transcripts for ZNF3 Gene

Unigene Clusters for ZNF3 Gene

Zinc finger protein 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d · 6e · 6f · 6g
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - - - - -
SP5: - - - - -
SP6: - - - - - - -
SP7: - - - - - - - -
SP8: - - -
SP9: - - -
SP10: - - - - -
SP11: - - - - -
SP12: -
SP13: - - - -

Relevant External Links for ZNF3 Gene

GeneLoc Exon Structure for
ZNF3
ECgene alternative splicing isoforms for
ZNF3

Expression for ZNF3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZNF3 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (67.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZNF3 Gene



Protein tissue co-expression partners for ZNF3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF3 Gene:

ZNF3

SOURCE GeneReport for Unigene cluster for ZNF3 Gene:

Hs.435302

Evidence on tissue expression from TISSUES for ZNF3 Gene

  • Intestine(4.2)
  • Skin(4.2)
  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with ZNF3: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF3 Gene

Orthologs for ZNF3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF3 33 34
  • 99.48 (n)
dog
(Canis familiaris)
Mammalia ZNF3 34
  • 94 (a)
OneToOne
LOC489848 33
  • 91.8 (n)
cow
(Bos Taurus)
Mammalia ZNF3 33 34
  • 88.12 (n)
mouse
(Mus musculus)
Mammalia Zfp113 33 16 34
  • 86.85 (n)
rat
(Rattus norvegicus)
Mammalia Zfp113 33
  • 86.07 (n)
oppossum
(Monodelphis domestica)
Mammalia ZNF3 34
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 26 (a)
ManyToMany
chicken
(Gallus gallus)
Aves ZFP92 34
  • 46 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 32 (a)
ManyToMany
Species where no ortholog for ZNF3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF3 Gene

ENSEMBL:
Gene Tree for ZNF3 (if available)
TreeFam:
Gene Tree for ZNF3 (if available)

Paralogs for ZNF3 Gene

(547) SIMAP similar genes for ZNF3 Gene using alignment to 8 proteins:

Pseudogenes.org Pseudogenes for ZNF3 Gene

genes like me logo Genes that share paralogs with ZNF3: view

Variants for ZNF3 Gene

Sequence variations from dbSNP and Humsavar for ZNF3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000146276 -- 100,075,885(+) TCCCC(C/T)CTTCT intron-variant
rs1000312949 -- 100,076,085(+) CTCCT(A/G)CCTCA intron-variant
rs1000449680 -- 100,081,729(+) AAAGA(A/G)CGGAA intron-variant, utr-variant-5-prime
rs1000490278 -- 100,070,426(+) CTCTC(C/T)CTCAC intron-variant, utr-variant-3-prime
rs1000604846 -- 100,082,539(+) CGACA(A/T)CGCAC upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF3 Gene

Variant ID Type Subtype PubMed ID
esv2734888 CNV deletion 23290073
nsv469687 CNV loss 16826518
nsv510966 OTHER complex 20534489
nsv607931 CNV loss 21841781

Variation tolerance for ZNF3 Gene

Residual Variation Intolerance Score: 18.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.20; 75.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF3 Gene

Disorders for ZNF3 Gene

Relevant External Links for ZNF3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF3

No disorders were found for ZNF3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF3 Gene

Publications for ZNF3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Members of the zinc finger protein gene family sharing a conserved N-terminal module. (PMID: 1945843) Rosati M … Grimaldi G (Nucleic acids research 1991) 3 4 60
  4. Multiple genes encoding zinc finger domains are expressed in human T cells. (PMID: 2288909) Thiesen HJ (The New biologist 1990) 3 4 60
  5. Isolation of cDNAs encoding finger proteins and measurement of the corresponding mRNA levels during myeloid terminal differentiation. (PMID: 3380682) Pannuti A … Lania L (Nucleic acids research 1988) 3 4 60

Products for ZNF3 Gene

  • Addgene plasmids for ZNF3

Sources for ZNF3 Gene

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