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ZNF296 Gene

protein-coding   GIFtS: 43
GCID: GC19M045574

Zinc Finger Protein 296

(Previous name: zinc finger protein 342)
(Previous symbol: ZNF342)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 2961 2
ZNF3421 2 3 5
Zinc Finger Protein 3421 2 3
ZFP2962 3 5

External Ids:    HGNC: 159811   Entrez Gene: 1629792   Ensembl: ENSG000001706847   OMIM: 6132265   UniProtKB: Q8WUU43   

Export aliases for ZNF296 gene to outside databases

Previous GC identifers: GC00U990682 GC19U900558 GC19M050267 GC19M042004


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF296 Gene:
ZNF296 (zinc finger protein 296) is a protein-coding gene. Diseases associated with ZNF296 include oligodendroglioma, and acute myeloid leukemia. An important paralog of this gene is BCL11A.

UniProtKB/Swiss-Prot: ZN296_HUMAN, Q8WUU4
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF296 gene promoter:
         MZF-1   Spz1   FAC1   Pax-5   NF-kappaB2   STAT3   NF-kappaB   NF-kappaB1   Roaz   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF296 promoter sequence
   Search Chromatin IP Primers for ZNF296

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF296


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.32   Ensembl cytogenetic band:  19q13.32   HGNC cytogenetic band: 19q13.32

ZNF296 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF296 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M045574:  view genomic region     (about GC identifiers)

Start:
45,574,758 bp from pter      End:
45,579,846 bp from pter
Size:
5,089 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZN296_HUMAN, Q8WUU4 (See protein sequence)
Recommended Name: Zinc finger protein 296  
Size: 475 amino acids; 50810 Da

Explore the universe of human proteins at neXtProt for ZNF296: NX_Q8WUU4

Explore proteomics data for ZNF296 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF296 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_660331.1  
    ENSEMBL proteins: 
     ENSP00000302770  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q8WUU4

    ProtoNet protein and cluster: Q8WUU4

    UniProtKB/Swiss-Prot: ZN296_HUMAN, Q8WUU4
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 6 C2H2-type zinc fingers


    ZNF296 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN296_HUMAN, Q8WUU4
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003677DNA binding IEA--
    GO:0046872metal ion binding IEA--
         
    ZNF296 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF296:
     Decreased Wnt reporter activit 

    Animal Models:
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    miRTarBase miRNAs that target ZNF296:
    hsa-mir-151a-5p (MIRT038191)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN296_HUMAN, Q8WUU4: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005634nucleus IEA--

    ZNF296 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF296
    Interactions:

        Search GeneGlobe Interaction Network for ZNF296

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--
    GO:0007283spermatogenesis ISS--

    ZNF296 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF296 (ZN296)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZNF296 gene: 
    NM_145288.1  

    Unigene Cluster for ZNF296:

    Zinc finger protein 296
    Hs.192237  [show with all ESTs]
    Unigene Representative Sequence: AF447583
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000303809(uc002pao.3)
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat ZNF296

    Additional mRNA sequence: 

    AF447583.1 AY040679.1 BC019352.1 

    3 DOTS entries:

    DT.95274061  DT.112783  DT.86841312 

    Selected AceView cDNA sequences (see all 46):

    NM_145288 BQ271099 BF439795 BQ271023 AY040679 AW290905 AI239807 AI924144 
    AW295361 BC019352 BF434185 AF447583 AI335253 CK825492 AI991290 AI138277 
    BI261643 BE793280 BM927505 BE217819 AI991282 BF448379 BI261868 AI799969 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF296 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCCCTTCGG
    ZNF296 Expression
    About this image

    ZNF296 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF296 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.192237
        Custom PCR Arrays for ZNF296
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF296

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZNF296 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp2961 , 5 zinc finger protein 2961, 5 73.84(n)1
    68.88(a)1
      7 (9.93 cM)5
    638721  NM_022409.21  NP_071854.21 
     195772875 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    20(a)
    many ↔ many
    1(10103099-10103430)
    zebrafish
    (Danio rerio)
    Actinopterygii znf2966
    zinc finger protein 296
    18(a)
    1 ↔ 1
    18(34971759-34988134) ENSDARG00000077897
    fruit fly
    (Drosophila melanogaster)
    Insecta CG96506
    --
    10(a)
    1 → many
    X(7031777-7135965)
    worm
    (Caenorhabditis elegans)
    Secernentea F13H6.16
    Protein F13H6.1, isoform b (F13H6.1) mRNA, complet...
    14(a)
    1 → many
    V(6356025-6362954) WBGene00017430


    ENSEMBL Gene Tree for ZNF296 (if available)
    TreeFam Gene Tree for ZNF296 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF296 gene
    BCL11A2  BCL11B2  
    2 SIMAP similar genes for ZNF296 using alignment to 1 protein entry:     ZN296_HUMAN:
    HCA107    ZNF697

    ZNF296 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF296 (see all 162)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1163495191,2
    F--45574751(+) TCCAGA/GCGGGT 1 -- int11Minor allele frequency- G:0.03WA 118
    rs286739611,2
    C,F--45574755(+) GACGGG/CTGTAA 1 -- int16Minor allele frequency- C:0.42NA CSA WA EA 364
    rs1398573131,2
    C--45574778(+) ATTTAC/TTTGGA 1 -- ut310--------
    rs1897675551,2
    C,F--45574800(+) AAAACG/AAGGAG 1 -- ut311Minor allele frequency- A:0.00EU 529
    rs3755116821,2
    C--45574825(+) GCAGCA/GGTACC 1 -- ut310--------
    rs1824682881,2
    C--45574843(+) GTGAGA/GGGGGC 1 -- ut310--------
    rs1395363531,2
    C--45574867(+) GGCCTC/TGCCGG 2 K E mis11Minor allele frequency- T:0.00NA 4490
    rs2003926321,2
    C--45574871(+) TCGCCG/AGCCGC 2 /A syn11Minor allele frequency- A:0.00EU 709
    rs1453786081,2
    C,F--45574875(+) CGGCCG/ACCTCA 2 /A /V mis11Minor allele frequency- A:0.00NA 4508
    rs1432974391,2
    C--45574894(+) CTGCCA/GCAGGT 2 R W mis10--------

    HapMap Linkage Disequilibrium report for ZNF296 (45574758 - 45579846 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF296:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv912142CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF296
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF296

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 613226    OMIM disorders: --

    5 diseases for ZNF296:    
    About MalaCards
    oligodendroglioma    acute myeloid leukemia    myeloid leukemia    b-cell lymphomas
    leukemia


    ZNF296 for disorders           About GeneDecksing


    Export disorders for ZNF296 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF296 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF296)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. The contribution of genetic and epigenetic mechanisms to gene silencing in oligodendrogliomas. (PubMed id 14633674)1, 3 Hong C....Costello J.F. (Cancer Res. 2003)
    3. Cloning, structure, expression analysis, and assignment to mouse chromosome 7 of the gene Zfp296 encoding a zinc finger protein. (PubMed id 11063263)1, 3 Dear T.N. (Mamm. Genome 2000)
    4. Overexpression of ZNF342 by juxtaposition with MPO promoter/enhancer in the novel translocation t(17;19)(q23;q13.32) in pediatric acute myeloid leukemia and analysis of ZNF342 expression in leukemia. (PubMed id 19255975)1 Poland K.S....Plon S.E. (amp 2009)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 162979 HGNC: 15981 AceView: ZNF342 Ensembl:ENSG00000170684 euGenes: HUgn162979
    ECgene: ZNF296 H-InvDB: ZNF296

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF296 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF296 gene:
    Search GeneIP for patents involving ZNF296

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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