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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF285 Gene

protein-coding   GIFtS: 43
GCID: GC19M044886

zinc finger protein 285

(Previous name: zinc finger protein 285A )
(Previous symbol: ZNF285A)
  Search for ZNF285
in our new
 Human Malady Compendium 
Biological research products
for ZNF285
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Zinc Finger Protein 2851 2
Zinc Finger Protein 285A1 2 3
ZNF285A1 2 3

External Ids:    HGNC: 130791   Entrez Gene: 269742   Ensembl: ENSG000002675087   UniProtKB: Q96NJ33   

Export aliases for ZNF285 gene to outside databases

Previous GC identifers: GC00U990660 GC19U900206 GC19M049578 GC19M041321


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZN285_HUMAN, Q96NJ3
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ZNF285
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF285 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF285

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF285


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Ensembl cytogenetic band:  19q13.31   HGNC cytogenetic band: 19q13.32

ZNF285 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF285 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M044886:  view genomic region     (about GC identifiers)

Start:
44,886,459 bp from pter      End:
44,905,777 bp from pter
Size:
19,319 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZN285_HUMAN, Q96NJ3 (See protein sequence)
Recommended Name: Zinc finger protein 285  
Size: 590 amino acids; 68261 Da
Subcellular location: Nucleus (Probable)
Secondary accessions: Q17RJ3 Q6B0A8 Q6ISR5
Alternative splicing: 2 isoforms:  Q96NJ3-1   Q96NJ3-2   

Explore the universe of human proteins at neXtProt for ZNF285: NX_Q96NJ3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96NJ3

  • ZNF285 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_689567.3  
    ENSEMBL proteins: 
     ENSP00000333595   ENSP00000439431   ENSP00000464788   ENSP00000468399   ENSP00000467795  
    Reactome Protein details: Q96NJ3
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    Uscn Proteins for ZNF285

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--


    ZNF285 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ZNF285 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR001909 Krueppel-associated_box
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96NJ3

    ProtoNet protein and cluster: Q96NJ3

    1 Blocks protein family: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZN285_HUMAN, Q96NJ3
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 11 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ZN285_HUMAN, Q96NJ3
    Function: May be involved in transcriptional regulation

    miRNA
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    hsa-miR-3667-3p
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    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0008270zinc ion binding IEA--


    ZNF285 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Generic Transcription Pathway
    Generic Transcription Pathway1.00
    Gene Expression0.46

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    2        Reactome Pathways for ZNF285
        Generic Transcription Pathway
    Gene Expression



    ZNF285 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF285

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--


    ZNF285 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF285
    Search CenterWatch for drugs/clinical trials and news about ZNF285 / ZN285 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF285 gene: 
    NM_152354.3  

    Unigene Cluster for ZNF285:

    Zinc finger protein 285
    Hs.709428  [show with all ESTs]
    Unigene Representative Sequence: AL833447
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000330997(uc010xxa.2 uc002ozd.4) ENST00000544719 ENST00000591679
    ENST00000585868 ENST00000589738 ENST00000589885

    miRNA
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    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ZNF285
    1 QIAGEN miScript miRNA Assays for microRNA that regulate ZNF285:
    hsa-miR-3667-3p
    SwitchGear 3'UTR luciferase reporter plasmidZNF285 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZNF285
    OriGene shRNA RFP: ZNF285
    OriGene siRNA: ZNF285
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZNF285
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF285
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF285 (see all 2)
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    GenScript: all cDNA clones in your preferred vector: ZNF285 (NM_152354)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZNF285
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF285 
    Primer
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    Browse OriGene validated miRNA SYBR primer pairs
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNF285
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF285

    Additional cDNA sequence: 

    AK055309.1 AL833447.1 AY166790.1 BC069384.1 BC074824.2 BC074875.2 BC117300.1 BC117302.1 
    BC143984.1 

    3 DOTS entries:

    DT.400938  DT.121459491  DT.121459486 

    24/25 AceView cDNA sequences (see all 25):

    NM_152354 BX282010 AA716578 AW513227 BF343511 AI208630 AW183184 BX643240 
    BM987858 BC069384 BC074824 AY166790 AI208631 AK055309 BM681972 BQ215606 
    BC074875 BM729030 AL833447 AA813778 BX488656 BF352512 AI369486 AW812382 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF285 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGAAAATTCA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ZNF285 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF285

    SOURCE GeneReport for Unigene cluster: Hs.709428
        SABiosciences Custom PCR Arrays for ZNF285
    Primer
    Products:
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF285
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF285

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
      --

    ENSEMBL Gene Tree for ZNF285 (if available)
    TreeFam Gene Tree for ZNF285 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF285 gene
    ZNF2292  ZNF2232  ZNF2302  ENSG000000623702  ZNF1552  ZNF6642  ZNF2272  ZNF2392  
    ZNF2342  ZNF2242  ZNF2252  ZNF2262  ZNF2142  ZNF2222  ZNF2842  ENSG000002671732  
    ZNF452  ZNF2352  ZNF2212  ENSG000002670222  ZNF2332  
    18/510 SIMAP similar genes for ZNF285 using alignment to 5 protein entries:     ZN285_HUMAN (see all proteins) (see all similar genes):
    ZNF285A    ZNF806    ZFS-4    ZNF224    ZNF56    MGC12518
    ZNF846    ZNF789    ZNF226    ZSCAN16    ZNF559    ZNF230
    DKFZp686M04222    ZNF    ZNF235    ZNF589    ZNF433    ZNF234

    ZNF285 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/540 NCBI SNPs in ZNF285 are shown (see all 540    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1474801271,2
    Cunknown44899532(+) CAGGAC/TACCAA 1 -- int10--------
    rs772627401,2
    C,F,--44889353(+) TGTTGG/CTCACT 1 -- ds50012Minor allele frequency- C:0.50NA CSA 4
    rs749191021,2
    C,--44889371(+) ATGTTG/AATTTT 1 -- ds50011Minor allele frequency- A:0.50NA 2
    rs750522091,2
    C,--44889372(+) TGTTGG/ATTTTA 1 -- ds50011Minor allele frequency- A:0.50NA 2
    rs2010684451,2
    C--44889423(-) AAATTA/GACTAG 1 -- ds50010--------
    rs1174750201,2
    F,--44889510(+) TCTTAC/TGTCGG 1 -- ds50011Minor allele frequency- T:0.03EA 120
    rs1143282391,2
    --44889550(+) ACAGCC/TATATC 1 -- ds50010--------
    rs1862889161,2
    --44889637(+) AGATGG/TTTGCA 1 -- ds50010--------
    rs27227571,2
    C,F,A,H,--44889660(+) GCCTTA/GAAGAT 1 -- ds500123Minor allele frequency- G:0.26NS EA NA WA CSA 2522
    rs1406070641,2
    --44889817(+) GAGACA/GCAATG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF285 (44886459 - 44905777 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ZNF285: --

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF285

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF285 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZNF285)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. (PubMed id 12743021)1 Shannon M.... Stubbs L. (2003)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 26974 HGNC: 13079 AceView: ZNF285 Ensembl:ENSG00000267508 euGenes: HUgn26974
    ECgene: ZNF285 H-InvDB: ZNF285

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF285 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZNF285 gene:
    Search GeneIP for patents involving ZNF285

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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    VWF
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    von Willebrand factor
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