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ZNF28 Gene

protein-coding   GIFtS: 48
GCID: GC19M053300

Zinc Finger Protein 28

(Previous name: zinc finger protein 28 (KOX 24))
  Search for ZNF28
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 281 2
Zinc Finger Protein KOX242 3
KOX242 3
Zinc Finger Protein 28 (KOX 24)1
ARFGAP25
ZNF2895

External Ids:    HGNC: 130731   Entrez Gene: 75762   Ensembl: ENSG000001985387   OMIM: 6069085   UniProtKB: P170353   

Export aliases for ZNF28 gene to outside databases

Previous GC identifers: GC19U990097 GC19M053665 GC19M057981 GC19M057995 GC19M057992 GC19M049628


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF28 Gene:
ZNF28 (zinc finger protein 28) is a protein-coding gene. An important paralog of this gene is ZNF534.

UniProtKB/Swiss-Prot: ZNF28_HUMAN, P17035
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF28 gene promoter:
         Olf-1   FOXD1   FOXO3   CUTL1   RelA   NF-kappaB   FOXO3b   FOXO3a   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF28 promoter sequence
   Search Chromatin IP Primers for ZNF28

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF28


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.41   Ensembl cytogenetic band:  19q13.41   HGNC cytogenetic band: 19q13.41

ZNF28 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF28 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M053300:  view genomic region     (about GC identifiers)

Start:
53,300,661 bp from pter      End:
53,360,853 bp from pter
Size:
60,193 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZNF28_HUMAN, P17035 (See protein sequence)
Recommended Name: Zinc finger protein 28  
Size: 718 amino acids; 83658 Da
Sequence caution: Sequence=BAD18706.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: A8KAK9 B4E3G0 B9EIK7 Q5H9V1 Q5HYM9 Q6ZML9 Q6ZN56
Alternative splicing: 2 isoforms:  P17035-1   P17035-2   

Explore the universe of human proteins at neXtProt for ZNF28: NX_P17035

Explore proteomics data for ZNF28 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys636
  • Modification sites at PhosphoSitePlus

  • See ZNF28 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_008900.3  
    ENSEMBL proteins: 
     ENSP00000412143   ENSP00000397693   ENSP00000375661   ENSP00000471448   ENSP00000469381  
     ENSP00000344777   ENSP00000353410   ENSP00000444965  
    Reactome Protein details: P17035

    ZNF28 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for ZNF28

     
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P17035

    ProtoNet protein and cluster: P17035

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZNF28_HUMAN, P17035
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 18 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZNF28           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZNF28_HUMAN, P17035
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF28:
    zinc finger protein 28 (KOX24) (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IBA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF28           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF28:
     Increased HPV18 LCR reporter a 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF28
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    miRNA
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    miRTarBase miRNAs that target ZNF28:
    hsa-mir-155-5p (MIRT020991)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZNF28_HUMAN, P17035: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF28           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF28 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZNF28           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF28
        Generic Transcription Pathway


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF28
    Interactions:

        Search GeneGlobe Interaction Network for ZNF28

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for ZNF28 (ENSP000003976934) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IBA--

    Find genes that share ontologies with ZNF28           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF28



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF28 gene: 
    NM_006969.3  

    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000438150 ENST00000457749(uc002qac.3 uc002qad.3 uc010eqe.3)
    ENST00000391783 ENST00000596559 ENST00000594602 ENST00000339844 ENST00000464469
    ENST00000542421 ENST00000360272 ENST00000414252
    miRNA
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    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZNF28
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF28
      QuantiFast Probe-based Assays in human, mouse, rat ZNF28

    23 AceView cDNA sequences:

    X52355 AI865269 AA303124 AL710102 AK131368 AK091553 BU508362 AK092385 
    AI571977 BX502948 BQ432336 CD657347 BG679389 NM_006969 AX747056 AX747512 
    AK131574 BX640767 AA303125 AA999778 BE270108 AL708899 BX472366 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF28 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF28 Expression
    About this image

    ZNF28 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF28 Protein Expression
        Custom PCR Arrays for ZNF28
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF28

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF28 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia --
    Uncharacterized protein
    53(a)
    many ↔ many
    1(104870859-104886591)
    African clawed frog
    (Xenopus laevis)
    Amphibia X70680.12   -- 74.9(n)    X70680.1 


    ENSEMBL Gene Tree for ZNF28 (if available)
    TreeFam Gene Tree for ZNF28 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF28 gene
    ZNF5342  ZNF321P2  ZNF4682  ZNF5782  ZNF8802  ZNF7662  ZNF3202  ZNF5252  
    ZNF8602  ZNF4152  ZNF6002  ZNF5282  ZNF6112  ZNF6772  ZNF832  ZNF8162  
    ZNF6102  ZNF7012  ZNF7652  ZNF4802  ZNF8132  
    Selected SIMAP similar genes for ZNF28 using alignment to 6 protein entries:     ZNF28_HUMAN (see all proteins) (see all similar genes):
    TNNT1    HC6    KIAA1651    ZNF468    LINC00999    ZFP57
    ZNF525    ZNF528    AVGR5    C12orf76    FOPNL    TBCB
    ZNF519    ZNF625-ZNF20    ZNF677    ZNF813    TMEM14B    kr-znf3

    Find genes that share paralogs with ZNF28           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for ZNF28
    PGOHUM00000235653


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF28 (see all 805)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1418080811,2
    C--53300255(+) CTAGCA/CAACTG 3 -- int10--------
    rs1899570041,2
    C--53300276(+) GATATA/TAAAAG 3 -- int10--------
    rs65096851,2
    C,F,A,H--53300454(+) ctaccC/Aaaaat 3 -- int118Minor allele frequency- A:0.08NS EA NA WA CSA 1211
    rs81025561,2
    C,F,A,H--53300487(+) caacaG/Atacaa 3 -- int17Minor allele frequency- A:0.07NS EA WA NA 656
    rs1816015541,2
    --53300550(+) TGCTTC/TTCCTG 3 -- int10--------
    rs1862741331,2
    --53300582(+) AATGCC/TCTCAC 3 -- int10--------
    rs1911521991,2
    --53300655(+) ACTCAC/TCCAAA 3 -- int10--------
    rs30875981,2
    C,F,H--53300717(-) gtgatA/Tttctt 3 -- nc-transcript-variantut3116Minor allele frequency- T:0.28MN NS EA NA WA CSA 974
    rs1823393471,2
    --53300729(+) GTCAAC/TCAAAA 3 -- nc-transcript-variantut310--------
    rs605162341,2
    C,F--53300730(+) TCAACC/TAAAAT 3 -- nc-transcript-variantut316Minor allele frequency- T:0.13NA WA EA 364

    HapMap Linkage Disequilibrium report for ZNF28 (53300661 - 53360853 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for ZNF28 (see all 44):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2718787CNV Deletion23290073
    dgv660e199CNV Deletion23128226
    esv2718796CNV Deletion23290073
    esv1009469CNV Deletion20482838
    esv1004256CNV Deletion20482838
    esv2676843CNV Deletion23128226
    esv1979870CNV Deletion18987734
    esv2013773CNV Deletion18987734
    esv2718799CNV Deletion23290073
    esv2445065CNV Deletion19546169

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 606908    OMIM disorders: --


    Find genes that share disorders with ZNF28           About GenesLikeMe


    Export disorders for ZNF28 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF28 gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with ZNF28)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Multiple genes encoding zinc finger domains are expressed in human T cells. (PubMed id 2288909)1, 2 Thiesen H.-J. (New Biol. 1990)
    3. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    5. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    6. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    7. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    8. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (BMC Genomics 2007)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    10. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7576 HGNC: 13073 AceView: ZNF28 Ensembl:ENSG00000198538 euGenes: HUgn7576
    ECgene: ZNF28 H-InvDB: ZNF28

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF28 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF28 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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