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ZNF277 Gene

protein-coding   GIFtS: 48
GCID: GC07P111846

Zinc Finger Protein 277

(Previous names: zinc finger protein (C2H2 type) 277, zinc finger protein...)
(Previous symbol: ZNF277P)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 2771 2
ZNF277P1 2 3
Zinc Finger Protein (C2H2 Type) 2771 2
Zinc Finger Protein 277 Pseudogene1 2
Nuclear Receptor-Interacting Factor 42 3
NRIF42 3

External Ids:    HGNC: 130701   Entrez Gene: 111792   Ensembl: ENSG000001988397   OMIM: 6054655   UniProtKB: Q9NRM23   

Export aliases for ZNF277 gene to outside databases

Previous GC identifers: GC07P110330 GC07P111393 GC07P111407 GC07P111440 GC07P111633 GC07P106214


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF277 Gene:
ZNF277 (zinc finger protein 277) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity.

UniProtKB/Swiss-Prot: ZN277_HUMAN, Q9NRM2
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF277 (ZNF277P) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000007.13  NT_007933.16  NC_018918.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF277 gene promoter:
         STAT5B   Olf-1   IRF-1   Evi-1   Egr-4   CREB   AREB6   Chx10   TGIF   Pax-4a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZNF277 promoter sequence
   Search Chromatin IP Primers for ZNF277

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF277


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q31.1   Ensembl cytogenetic band:  7q31.1   HGNC cytogenetic band: 7q31.1

ZNF277 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF277 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P111846:  view genomic region     (about GC identifiers)

Start:
111,846,643 bp from pter      End:
111,983,989 bp from pter
Size:
137,347 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 111,215,182-111,352,524     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZN277_HUMAN, Q9NRM2 (See protein sequence)
Recommended Name: Zinc finger protein 277  
Size: 450 amino acids; 52788 Da
Sequence caution: Sequence=AAF85941.1; Type=Erroneous initiation; Sequence=AAS07413.1; Type=Erroneous initiation;
Secondary accessions: Q75MZ2 Q75MZ3 Q8WY14

Explore the universe of human proteins at neXtProt for ZNF277: NX_Q9NRM2

Explore proteomics data for ZNF277 at MOPED


See ZNF277 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_068834.2  
ENSEMBL proteins: 
 ENSP00000354501   ENSP00000355043   ENSP00000410538   ENSP00000402846   ENSP00000390359  
 ENSP00000402292   ENSP00000415735  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR015880 Znf_C2H2-like
 IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q9NRM2

ProtoNet protein and cluster: Q9NRM2

UniProtKB/Swiss-Prot: ZN277_HUMAN, Q9NRM2
Similarity: Belongs to the ZNF277 family
Similarity: Contains 2 C2H2-type zinc fingers


Find genes that share domains with ZNF277           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: ZN277_HUMAN, Q9NRM2
Function: May be involved in transcriptional regulation

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0003700sequence-specific DNA binding transcription factor activity ----
GO:0046872metal ion binding IEA--
     
Find genes that share ontologies with ZNF277           About GenesLikeMe


Phenotypes:
     1 MGI mutant phenotype (inferred from 1 allele(MGI details for Zfp277):
 cellular 

Find genes that share phenotypes with ZNF277           About GenesLikeMe

Animal Models:
     MGI mouse knock-out Zfp277tm1Aiwa for ZNF277

   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF277
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   genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for ZNF277

miRNA
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5 qRT-PCR Assays for microRNAs that regulate ZNF277:
hsa-miR-498 hsa-miR-607 hsa-miR-197 hsa-miR-3182 hsa-miR-103a-2*
SwitchGear 3'UTR luciferase reporter plasmidZNF277 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat ZNF277

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
ZN277_HUMAN, Q9NRM2: Nucleus (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol2
plasma membrane1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF277
Interactions:

    Search GeneGlobe Interaction Network for ZNF277

STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

Selected Interacting proteins for ZNF277 (Q9NRM23 ENSP000003545014) via UniProtKB, MINT, STRING, and/or I2D (see all 13)
InteractantInteraction Details
GeneCardExternal ID(s)
ACOT2P497533, ENSP000002386514I2D: score=2 STRING: ENSP00000238651
COILP384323, ENSP000002403164I2D: score=2 STRING: ENSP00000240316
ZNF768Q9H5H43, ENSP000003697774I2D: score=1 STRING: ENSP00000369777
GPRC5CQ9NQ843, ENSP000003405954I2D: score=1 STRING: ENSP00000340595
DDB1Q165313, ENSP000003017644I2D: score=1 STRING: ENSP00000301764
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Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--
GO:0006355regulation of transcription, DNA-templated IEA--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for ZNF277 (ZN277)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for ZNF277 gene: 
NM_021994.2  

Unigene Cluster for ZNF277:

Zinc finger protein 277
Hs.655904  [show with all ESTs]
Unigene Representative Sequence: NM_021994
7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000361822(uc003vge.2 uc003vgf.2) ENST00000361946 ENST00000421043(uc003vgc.3)
ENST00000457808 ENST00000425229 ENST00000450657(uc003vgd.3) ENST00000421864

miRNA
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5 qRT-PCR Assays for microRNAs that regulate ZNF277:
hsa-miR-498 hsa-miR-607 hsa-miR-197 hsa-miR-3182 hsa-miR-103a-2*
SwitchGear 3'UTR luciferase reporter plasmidZNF277 3' UTR sequence
Inhib. RNA
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Primer
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  QuantiTect SYBR Green Assays in human, mouse, rat ZNF277
  QuantiFast Probe-based Assays in human, mouse, rat ZNF277

Additional mRNA sequence: 

AF209198.1 AF308819.1 AK027128.1 AK314630.1 AL713791.1 BC020626.1 

8 DOTS entries:

DT.100776590  DT.112863  DT.91677011  DT.95269735  DT.87011048  DT.121115903  DT.99992738  DT.121115930 

Selected AceView cDNA sequences (see all 142):

AF308819 T81532 CR606452 CB114668 BX460665 AI241170 CA396831 BM822099 
AF209198 CR604080 BX091635 AA486202 N24381 BM788257 AI638572 AI671325 
BF727443 BE645373 CR600080 AI635559 BC020626 CR605159 NM_021994 AL522105 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF277 (see all 6)    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1:                          -                                         -                                 
SP2:                          -                                                                           
SP3:                          -                                                                           
SP4:                          -     -                                   -                                 
SP5:                          -     -     -     -                       -                                 


ECgene alternative splicing isoforms for ZNF277

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZNF277 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TGGCAGTCTG
ZNF277 Expression
About this image

ZNF277 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ZNF277 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.655904
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF277

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for ZNF277 gene from Selected species (see all 18)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Zfp2771 , 5 zinc finger protein 2771, 5 84.37(n)1
88.17(a)1
  12 (18.06 cM)5
2461961  NM_178845.31  NP_849173.21 
 403150465 
chicken
(Gallus gallus)
Aves ZNF2771 zinc finger protein 277 75.31(n)
76.65(a)
  427859  NM_001195469.1  NP_001182398.1 
lizard
(Anolis carolinensis)
Reptilia ZNF2776
zinc finger protein 277
66(a)
1 ↔ 1
5(58378253-58427189)
African clawed frog
(Xenopus laevis)
Amphibia 480610842   -- 75.67(n)    48061084 
zebrafish
(Danio rerio)
Actinopterygii zgc664072 hypothetical protein MGC66407 73.84(n)   393402  BC054699.1 
fruit fly
(Drosophila melanogaster)
Insecta CG98901 , 3 CG98901 36(a)3
47.52(n)1
39.95(a)1
  59C33
376591  NM_137906.31  NP_611750.11 
worm
(Caenorhabditis elegans)
Secernentea F46B6.73
ztf-71
Zinc finger, C2H2 type3
ztf-71
37(a)3
50.7(n)1
42.37(a)1
  V(9790103-9792232)3
1793751  NM_073125.41  NP_505526.11 


ENSEMBL Gene Tree for ZNF277 (if available)
TreeFam Gene Tree for ZNF277 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for ZNF277 gene
1 SIMAP similar gene for ZNF277 using alignment to 10 protein entries:     ZN277_HUMAN (see all proteins):
DKFZp566A0447

Find genes that share paralogs with ZNF277           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ZNF277 (see all 2339)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
VAR_0355754
A breast cancer sample4--see VAR_0355752 L F mis40--------
VAR_0355744
A breast cancer sample4--see VAR_0355742 I L mis40--------
rs1840093331,2
--111848511(+) GTTTAA/GAAGTT 1 -- int10--------
rs78106361,2
C--111848585(+) CACAGT/CACCAC 1 -- int19Minor allele frequency- C:0.22NA WA CSA EA 369
rs1997281371,2
C--111848640(+) ACATA-/TTCTTCTT 1 -- int10--------
rs1125290221,2
C--111848651(+) TTCTTC/TTTTTT 1 -- int11Minor allele frequency- T:0.50CSA 2
rs1892329881,2
--111848654(+) TTCTTC/TTTTTT 1 -- int10--------
rs1117673371,2
F--111848678(+) AATCCA/C/GTATTC 1 -- int11CSA 1
rs20407261,2
C,F,A,H--111848705(+) TCTTAT/CATGAC 1 -- int110Minor allele frequency- C:0.09NS EA NA WA 796
rs1443499771,2
C--111848905(+) TAGTTA/TTTTGT 1 -- int10--------

HapMap Linkage Disequilibrium report for ZNF277 (111846643 - 111983989 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for ZNF277:    About this table    
Variant IDTypeSubtypePubMed ID
esv2656841CNV Deletion23128226
esv2422365CNV Duplication17116639
esv268074CNV Insertion20981092
nsv5902CNV Loss18451855
nsv464689CNV Gain19166990

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing ZNF277
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605465    OMIM disorders: --


Find genes that share disorders with ZNF277           About GenesLikeMe

Genetic Association Database (GAD): ZNF277

Export disorders for ZNF277 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ZNF277 gene, integrated from 10 sources (see all 20):
(articles sorted by number of sources associating them with ZNF277)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Chromosomal mapping and genomic organization of an evolutionarily conserved zinc finger gene ZNF277. (PubMed id 10860669)1, 2, 3 Liang H.... Nagarajan L. (Genomics 2000)
  2. Human-specific nonsense mutations identified by genome sequence comparisons. (PubMed id 16395595)1, 3 Hahn Y. and Lee B. (Hum. Genet. 2006)
  3. Finer delineation and transcript map of the 7q31 locus deleted in myeloid neoplasms. (PubMed id 16213364)1, 3 Liang H....Nagarajan L. (Cancer Genet. Cytogenet. 2005)
  4. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (Nature 2003)
  5. Genetic variants associated with breast size also influence breast cancer risk. (PubMed id 22747683)1 Eriksson N....Tung J.Y. (BMC Med. Genet. 2012)
  6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
  7. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
  8. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (Cell 2010)
  9. A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication. (PubMed id 19460752)1 Yeung M.L....Jeang K.T. (J. Biol. Chem. 2009)
  10. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (BMC Med. Genet. 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 11179 HGNC: 13070 AceView: ZNF277 Ensembl:ENSG00000198839 euGenes: HUgn11179
ECgene: ZNF277 H-InvDB: ZNF277

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ZNF277 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ZNF277 gene:
Search GeneIP for patents involving ZNF277

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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