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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF239 Gene

protein-coding   GIFtS: 55
GCID: GC10M044051

Zinc Finger Protein 239

Alzheimer's & Parkinson's Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 2391 2     HOK-22
MOK22 3 5     Zinc Finger Protein (C2H2) Homologous To Mouse MOK-22
Zinc Finger Protein HOK-22 3     HOK23
Zinc Finger Protein MOK-22 3     

External Ids:    HGNC: 130311   Entrez Gene: 81872   Ensembl: ENSG000001967937   OMIM: 6010695   UniProtKB: Q166003   

Export aliases for ZNF239 gene to outside databases

Previous GC identifers: GC10M043340 GC10M043520 GC10M043826 GC10M043335 GC10M043371 GC10M040579


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ZNF239 Gene:
MOK2 proteins are DNA- and RNA-binding proteins that are mainly associated with nuclear RNP components, including
the nucleoli and extranucleolar structures (Arranz et al., 1997 (PubMed 9121460)).(supplied by OMIM, Mar 2008)

GeneCards Summary for ZNF239 Gene: 
ZNF239 (zinc finger protein 239) is a protein-coding gene. Diseases associated with ZNF239 include rabies, and alzheimer's disease. GO annotations related to this gene include RNA binding and DNA binding. An important paralog of this gene is ZNF664.

UniProtKB/Swiss-Prot: ZN239_HUMAN, Q16600
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF239 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NT_033985.7  NC_018921.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF239 gene promoter:
         IRF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF239 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF239

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF239


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q11.22-q11.23   Ensembl cytogenetic band:  10q11.21   HGNC cytogenetic band: 10q11.22-q11.23

ZNF239 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF239 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M044051:  view genomic region     (about GC identifiers)

Start:
44,051,792 bp from pter      End:
44,070,066 bp from pter
Size:
18,275 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZN239_HUMAN, Q16600 (See protein sequence)
Recommended Name: Zinc finger protein 239  
Size: 458 amino acids; 51591 Da
Subcellular location: Nucleus (Potential)
Secondary accessions: Q5T1G9 Q8TAS5

Explore the universe of human proteins at neXtProt for ZNF239: NX_Q16600

Explore proteomics data for ZNF239 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q16600

  • ZNF239 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF239 Protein Expression
    REFSEQ proteins (4 alternative transcripts): 
    NP_001092752.1  NP_001092753.1  NP_001092754.1  NP_005665.2  

    ENSEMBL proteins: 
     ENSP00000307774   ENSP00000363569   ENSP00000398202   ENSP00000443907  

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    Cloud-Clone Corp. Proteins for ZNF239 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    ZNF239 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q16600

    ProtoNet protein and cluster: Q16600

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZN239_HUMAN, Q16600
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 9 C2H2-type zinc fingers


    ZNF239 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN239_HUMAN, Q16600
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF239:
    Kruppel zinc finger protein 239,murine Mok2 homolog

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0003723RNA binding TAS9121460
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZNF239 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZNF239:
     Increased 8N DNA content  Increased number of mitotic ce 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for ZNF239 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for ZNF239

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    miRNA
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    3 QIAGEN miScript miRNA Assays for microRNAs that regulate ZNF239:
    hsa-miR-142-5p hsa-miR-3919 hsa-miR-4276
    SwitchGear 3'UTR luciferase reporter plasmidZNF239 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ZNF239

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    5 Interacting proteins for ZNF239 (Q166003 ENSP000003077744) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    LMNAP025453, ENSP000003572834I2D: score=2 STRING: ENSP00000357283
    AURKAO149653I2D: score=1 
    MAPK10P537793I2D: score=1 
    SPAG9O602713I2D: score=1 
    HDAC2ENSP000003813314STRING: ENSP00000381331
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    ZNF239 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF239 (ZN239)

    Search CenterWatch for drugs/clinical trials and news about ZNF239 / ZN239

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF239 gene (4 alternative transcripts): 
    NM_001099282.1  NM_001099283.1  NM_001099284.1  NM_005674.2  

    Unigene Cluster for ZNF239:

    Zinc finger protein 239
    Hs.25040  [show with all ESTs]
    Unigene Representative Sequence: NM_005674
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000306006(uc001jaw.4) ENST00000374446 ENST00000491188 ENST00000426961(uc009xmj.3)
    ENST00000535642(uc009xmk.3)

    miRNA
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    3 QIAGEN miScript miRNA Assays for microRNAs that regulate ZNF239:
    hsa-miR-142-5p hsa-miR-3919 hsa-miR-4276
    SwitchGear 3'UTR luciferase reporter plasmidZNF239 3' UTR sequence
    Inhib. RNA
    Products:
         
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF239

    Additional mRNA sequence: 

    AK292013.1 BC026030.1 X82125.1 X82128.1 

    11 DOTS entries:

    DT.309913  DT.97776276  DT.100753492  DT.121218197  DT.100669685  DT.121218204  DT.95357990  DT.121218194 
    DT.121218201  DT.75135280  DT.75172408 

    24/34 AceView cDNA sequences (see all 34):

    BC026030 BQ889598 AA402531 AI282397 BU151286 BX341529 BX401287 BM142454 
    CR605759 BF972892 CK820209 AL709847 BX376467 BX376466 BM801682 AI002289 
    CK820210 BX341530 X82125 BM354154 NM_005674 BM263150 BM273186 BX283348 

    GeneLoc Exon Structure

    5/14 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF239 (see all 14)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d · 7e · 7f · 7g · 7h · 7i · 7j · 7k
    SP1:                                -           -     -     -     -     -           -     -                                                                     
    SP2:                                -           -     -     -     -     -           -     -                                                                     
    SP3:                                            -     -     -     -     -           -     -                                                                     
    SP4:                                            -     -                 -           -     -                                                                     
    SP5:                                -     -     -     -     -     -     -           -     -                                                                     


    ECgene alternative splicing isoforms for ZNF239

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF239 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF239 Expression
    About this image


    See ZNF239 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF239

    SOURCE GeneReport for Unigene cluster: Hs.25040
        SABiosciences Custom PCR Arrays for ZNF239
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZNF239 gene from 4/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp2391 , 5 zinc finger protein 2391, 5 86.13(n)1
    94.92(a)1
      6 (55.62 cM)5
    226851  NM_008616.21  NP_032642.21 
     1178621005 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 4)
    --
    31(a)
    26(a)
    (see all 4)
    1 ↔ many
    possible ortholog
    (see all 4)
    GL343884.1(112712-114268)
    AAWZ02037965(878-9727)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1005369471 zinc finger protein 180-like 59.58(n)
    56.34(a)
      100536947  XM_003198491.1  XP_003198539.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG21203   -- 35(a)   7D15   --


    ENSEMBL Gene Tree for ZNF239 (if available)
    TreeFam Gene Tree for ZNF239 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF239 gene
    ZNF6642  
    18/487 SIMAP similar genes for ZNF239 using alignment to 1 protein entry:     ZN239_HUMAN(see all similar genes):
    HZF36    ZNF664    ZFP41    ZNF211    ZNF78L1    zf30
    DKFZp666C237    ZNF132    ZNF300    ZNF436    ZNF782    ZNF251
    ZNF271    ZNF286B    ZNF418    ZNF484    ZNF709    ZNF81

    ZNF239 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZNF239
    PGOHUM00000259560


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/416 SNPs in ZNF239 are shown (see all 416)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2001482641,2
    Cuntested144053482(+) CCCTCA/GATGAT 8 R * stg10--------
    rs1907684551,2
    --44051329(+) CTGTGC/GCAGCA 4 -- ds50010--------
    rs1161317721,2
    C,F--44051399(+) GTCACG/AAACTC 4 -- ds50011Minor allele frequency- A:0.04WA 118
    rs1416402101,2
    --44051465(+) TGGACA/CCTTCC 4 -- ds50010--------
    rs1806768711,2
    --44051646(+) CTATTA/TTATCT 4 -- ds50010--------
    rs1853460461,2
    --44051707(+) TCTTGA/GCCTAA 4 -- ds50010--------
    rs1900999951,2
    --44051808(+) ACCAGA/GGTTTC 4 -- ut310--------
    rs107934421,2
    C,F,A,H--44051819(+) AATTTA/CTCAGA 4 -- ut31 ese336Minor allele frequency- N:0.00EA NA NS WA CSA 3596
    rs29992771,2
    C,F,O,A,H--44051901(+) GAACAA/TGTAGT 4 -- ut31 ese322Minor allele frequency- N:0.00EA NA NS WA CSA 1360
    rs1827469261,2
    --44052086(+) AGAGTC/GATACT 4 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF239 (44051792 - 44070066 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ZNF239: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF239
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF239

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 601069    OMIM disorders: --

    2 diseases for ZNF239:    About MalaCards
    rabies    alzheimer's disease

    1 disease from the University of Copenhagen DISEASES database for ZNF239:
    Rabies

    ZNF239 for disorders           About GeneDecksing


    Congresses - knowledge worth sharing:  
    Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015
    Genetic Association Database (GAD): ZNF239
    Human Genome Epidemiology (HuGE) Navigator: ZNF239 (5 documents)

    Export disorders for ZNF239 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF239 gene, integrated from 9 sources (see all 16):
    (articles sorted by number of sources associating them with ZNF239)
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    1. Human and mouse Kruppel-like (MOK2) orthologue genes encode two different zinc finger proteins. (PubMed id 8587123)1, 2, 3 Ernoult-Lange M.... Kress M. (1995)
    2. Polymorphisms in predicted miRNA binding sites and os teoporosis. (PubMed id 20641033)1, 4 Lei S.F....Deng H.W. (2011)
    3. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451)1, 4 Grupe A....Goate A. (2006)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
    7. Localization of zinc finger Mok2 gene to mouse chromosome 6, a new region of homology with human chromosome 19. (PubMed id 8903737)1, 3 Arranz V....Ernoult-Lange M. (1996)
    8. Human and mouse MOK2 proteins are associated with nuclear ribonucleoprotein components and bind specifically to RNA and DNA through their zinc finger domains. (PubMed id 9121460)1, 9 Arranz V....Ernoult-Lange M. (1997)
    9. Mislocalization of human transcription factor MOK2 in the presence of pathogenic mutations of lamin A/C. (PubMed id 17760566)1, 9 Dreuillet C....Ernoult-Lange M. (2008)
    10. Functional dissection of lysine deacetylases reveals t hat HDAC1 and p300 regulate AMPK. (PubMed id 22318606)1 Lin Y.Y....Boeke J.D. (2012)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 8187 HGNC: 13031 AceView: ZNF239 Ensembl:ENSG00000196793 euGenes: HUgn8187
    ECgene: ZNF239 H-InvDB: ZNF239

    (According to HUGE)
    About This Section
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF239 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF239 gene:
    Search GeneIP for patents involving ZNF239

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