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ZNF233 Gene

protein-coding   GIFtS: 47
GCID: GC19P044754

Zinc Finger Protein 233

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 2331 2

External Ids:    HGNC: 309461   Entrez Gene: 3533552   Ensembl: ENSG000001599157   UniProtKB: A6NK533   

Export aliases for ZNF233 gene to outside databases

Previous GC identifers: GC19U900205 GC19P049446 GC19P041196


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF233 Gene:
ZNF233 (zinc finger protein 233) is a protein-coding gene. Diseases associated with ZNF233 include rabies, and ataxia. An important paralog of this gene is ZNF229.

UniProtKB/Swiss-Prot: ZN233_HUMAN, A6NK53
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF233 gene promoter:
         STAT5B   TBP   STAT4   STAT1beta   STAT6   STAT5A   STAT1alpha   STAT2   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF233 promoter sequence
   Search Chromatin IP Primers for ZNF233

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF233


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.31   Ensembl cytogenetic band:  19q13.31   HGNC cytogenetic band: 19q13.31

ZNF233 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF233 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P044754:  view genomic region     (about GC identifiers)

Start:
44,754,318 bp from pter      End:
44,779,470 bp from pter
Size:
25,153 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ZN233_HUMAN, A6NK53 (See protein sequence)
Recommended Name: Zinc finger protein 233  
Size: 670 amino acids; 76861 Da
Secondary accessions: B2RN78 B2RN79 Q86WL8

Explore the universe of human proteins at neXtProt for ZNF233: NX_A6NK53

Explore proteomics data for ZNF233 at MOPED


See ZNF233 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_001193934.1  NP_861421.2  

ENSEMBL proteins: 
 ENSP00000468154   ENSP00000466781   ENSP00000465136   ENSP00000375820   ENSP00000465307  
 ENSP00000334957  
Reactome Protein details: A6NK53

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
ZNF: Zinc fingers, C2H2-type

4 InterPro protein domains:
 IPR001909 Krueppel-associated_box
 IPR015880 Znf_C2H2-like
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry A6NK53

ProtoNet protein and cluster: A6NK53

UniProtKB/Swiss-Prot: ZN233_HUMAN, A6NK53
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
Similarity: Contains 12 C2H2-type zinc fingers
Similarity: Contains 1 KRAB domain


ZNF233 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: ZN233_HUMAN, A6NK53
Function: May be involved in transcriptional regulation

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003676nucleic acid binding ----
GO:0003677DNA binding IEA--
GO:0046872metal ion binding IEA--
     
ZNF233 for ontologies           About GeneDecksing


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miRTarBase miRNAs that target ZNF233:
hsa-mir-122-5p (MIRT023276), hsa-mir-26a-5p (MIRT050055), hsa-mir-1260b (MIRT052683)

Block miRNA regulation of human, mouse, rat ZNF233 using miScript Target Protectors
1 qRT-PCR Assays for microRNA that regulate ZNF233:
hsa-miR-500a
SwitchGear 3'UTR luciferase reporter plasmidZNF233 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
ZN233_HUMAN, A6NK53: Nucleus (Probable)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus4
cytosol2

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----
GO:0005634nucleus IEA--

ZNF233 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for ZNF233 About    
See pathways by source

SuperPathContained pathways About
1Gene Expression
Generic Transcription Pathway0.40
Gene Expression0.40

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


1 Reactome Pathway for ZNF233
    Generic Transcription Pathway



ZNF233 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF233
Interactions:

    Search GeneGlobe Interaction Network for ZNF233

2 Interacting proteins for ZNF233 (A6NK533) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
CACNA1AO005553I2D: score=1 
SCHIP1Q9P0W53I2D: score=1 
About this table

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--
GO:0006355regulation of transcription, DNA-templated IEA--

ZNF233 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for ZNF233 (ZN233)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for ZNF233 gene (2 alternative transcripts): 
NM_001207005.1  NM_181756.2  

Unigene Cluster for ZNF233:

Zinc finger protein 233
Hs.466891  [show with all ESTs]
Unigene Representative Sequence: AK055310
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000592581 ENST00000590668 ENST00000588489 ENST00000391958(uc021uvi.1 uc002oyy.2 uc002oyz.2)
ENST00000589522 ENST00000334152
miRNA
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hsa-miR-500a
SwitchGear 3'UTR luciferase reporter plasmidZNF233 3' UTR sequence
Inhib. RNA
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  QuantiFast Probe-based Assays in human, mouse, rat ZNF233

Additional mRNA sequence: 

AK055310.1 AK095351.1 AY166792.1 BC047795.1 BC136734.1 BC136735.1 

4 DOTS entries:

DT.308852  DT.121501520  DT.100744221  DT.101965596 

22 AceView cDNA sequences:

AI370301 AA489742 AK095351 AW006620 CB410813 AI080496 NM_181756 AI640385 
Z43472 AA489639 Z39548 BC047795 BP872817 AY166792 BU567813 AK055310 
AI401435 BQ722370 AA193646 AA411912 AA092496 BE156860 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZNF233 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: ATCGTGACCT
ZNF233 Expression
About this image

ZNF233 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ZNF233 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.466891
    Custom PCR Arrays for ZNF233
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF233

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for ZNF233 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves --
Uncharacterized protein
41(a)
many ↔ many
16(478531-480245)
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
44(a)
many ↔ many
AAWZ02036909(6-9671)
zebrafish
(Danio rerio)
Actinopterygii zgc:1629726
zgc:162972
35(a)
many ↔ many
19(7518720-7523887) ENSDARG00000076134
fruit fly
(Drosophila melanogaster)
Insecta CG43606
--
23(a)
many ↔ many
3R(16149996-16153732)
worm
(Caenorhabditis elegans)
Secernentea tag-1466
C27A12.26
Protein C27A12.2 (C27A12.2) mRNA, complete cds
19(a)
16(a)
many ↔ many
many ↔ many
I(6038406-6041265) WBGene00006492
I(6041670-6046176) WBGene00016154
        Species with no ortholog for ZNF233

ENSEMBL Gene Tree for ZNF233 (if available)
TreeFam Gene Tree for ZNF233 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for ZNF233 gene
ZNF2292  ZNF2232  ZNF2302  ZNF1552  ZNF2272  ZNF2242  ZNF2342  ZNF2252  
ZNF2262  ZNF2142  ZNF2222  ZNF2842  ENSG000002671732  ZNF452  ZNF2352  ZNF2212  
ZNF2852  ENSG000002670222  ZNF1122  
Selected SIMAP similar genes for ZNF233 using alignment to 6 protein entries:     ZN233_HUMAN (see all proteins) (see all similar genes):
ZNF224    ZNF112    ZNF844    ZNF225    ZNF625    ZNF235
ZNF763    ZNF818P    ZNF234    ZNF226    ZNF556    ZNF439
ZNF230    ZFS-4    ZNF124    ZNF78L1    ZNF705A    ZNF177

ZNF233 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ZNF233 (see all 427)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs12334471,2
C--44762171(-) aaaatG/Atgtat 2 -- us2k111Minor allele frequency- A:0.27NA WA CSA EA 372
rs1818277681,2
--44762258(+) ATCTCA/GCGTAT 2 -- us2k10--------
rs1847987451,2
--44762263(+) ACGTAC/TCAACA 2 -- us2k10--------
rs1894092741,2
--44762398(+) GGGGAC/TAGAAG 2 -- us2k10--------
rs3745607011,2
C--44762560(+) CCCCCA/GAACTT 2 -- us2k10--------
rs1485154491,2
--44762613(+) AAACAA/GAGCCT 2 -- us2k10--------
rs1418923541,2
--44762653(+) ACAAGA/GCTGCT 2 -- us2k10--------
rs1506524671,2
--44762910(+) TTGCAA/GTTTTT 2 -- us2k10--------
rs1807128811,2
--44763192(+) TAACTA/GTAGTA 2 -- us2k10--------
rs3680355571,2
C--44763476(+) AAAAG-/CAATGAC 2 -- us2k10--------

HapMap Linkage Disequilibrium report for ZNF233 (44754318 - 44779470 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for ZNF233:    About this table    
Variant IDTypeSubtypePubMed ID
nsv521923CNV Loss19592680

Human Gene Mutation Database (HGMD): ZNF233
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing ZNF233
DNA2.0 Custom Variant and Variant Library Synthesis for ZNF233

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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2 diseases for ZNF233:    
About MalaCards
rabies    ataxia

1 disease from the University of Copenhagen DISEASES database for ZNF233:
Rabies

ZNF233 for disorders           About GeneDecksing


Export disorders for ZNF233 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ZNF233 gene integrated from 10 sources:
(articles sorted by number of sources associating them with ZNF233)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. (PubMed id 12743021)1, 2, 3 Shannon M.... Stubbs L. (Genome Res. 2003)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  3. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
  4. Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia. (PubMed id 21078624)1 Kahle J.J....Zoghbi H.Y. (Hum. Mol. Genet. 2011)
  5. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
  6. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  8. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
  9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 353355 HGNC: 30946 AceView: ZNF233 Ensembl:ENSG00000159915 euGenes: HUgn353355
ECgene: ZNF233 H-InvDB: ZNF233

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ZNF233 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ZNF233 gene:
Search GeneIP for patents involving ZNF233

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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