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ZNF232 Gene

protein-coding   GIFtS: 48
GCID: GC17M005008

Zinc Finger Protein 232

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 2321 2
Zinc Finger And SCAN Domain-Containing Protein 112 3
ZSCAN112 3

External Ids:    HGNC: 130261   Entrez Gene: 77752   Ensembl: ENSG000001678407   UniProtKB: Q9UNY53   

Export aliases for ZNF232 gene to outside databases

Previous GC identifers: GC17M005428 GC17M004953 GC17M005209 GC17M004949 GC17M004899


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF232 Gene:
ZNF232 (zinc finger protein 232) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF446.

UniProtKB/Swiss-Prot: ZN232_HUMAN, Q9UNY5
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NT_010718.17  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF232 gene promoter:
         GR   PPAR-alpha   AP-2alpha isoform 3   GR-beta   AP-2alpha isoform 2   GR-alpha   AP-2alpha   YY1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZNF232 promoter sequence
   Search Chromatin IP Primers for ZNF232

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF232


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.2   Ensembl cytogenetic band:  17p13.2   HGNC cytogenetic band: 17p13.2

ZNF232 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF232 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M005008:  view genomic region     (about GC identifiers)

Start:
5,008,836 bp from pter      End:
5,026,411 bp from pter
Size:
17,576 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN232_HUMAN, Q9UNY5 (See protein sequence)
Recommended Name: Zinc finger protein 232  
Size: 417 amino acids; 47688 Da
Sequence caution: Sequence=AAH16039.2; Type=Erroneous initiation;
Alternative splicing: 2 isoforms:  Q9UNY5-1   Q9UNY5-2   

Explore the universe of human proteins at neXtProt for ZNF232: NX_Q9UNY5

Explore proteomics data for ZNF232 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF232 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_055334.2  
    ENSEMBL proteins: 
     ENSP00000461305   ENSP00000250076   ENSP00000461267   ENSP00000458387   ENSP00000458589  
     ENSP00000416430  

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    Cloud-Clone Corp. Proteins for ZNF232

     
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    antibodies-online proteins for ZNF232 (4 products) 

     
    antibodies-online peptides for ZNF232

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    antibodies-online antibodies for ZNF232 (26 products) 

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    antibodies-online kits for ZNF232 (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    5 InterPro protein domains:
     IPR008916 Retrov_capsid_C
     IPR003309 Tscrpt_reg_SCAN
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9UNY5

    ProtoNet protein and cluster: Q9UNY5

    1 Blocks protein domain: IPB003309 Transcriptional regulator SCAN

    UniProtKB/Swiss-Prot: ZN232_HUMAN, Q9UNY5
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 5 C2H2-type zinc fingers
    Similarity: Contains 1 SCAN box domain


    Find genes that share domains with ZNF232           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN232_HUMAN, Q9UNY5
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IEA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF232           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF232

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN232_HUMAN, Q9UNY5: Nucleus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF232           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF232
    Interactions:

        Search GeneGlobe Interaction Network for ZNF232

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    Selected Interacting proteins for ZNF232 (Q9UNY52, 3 ENSP000002500764) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ZNF446Q9NWS93, ENSP000003365654I2D: score=3 STRING: ENSP00000336565
    YY1P254903, ENSP000002622384I2D: score=1 STRING: ENSP00000262238
    ALBP027683, ENSP000002958974I2D: score=1 STRING: ENSP00000295897
    NR2E3Q9Y5X43I2D: score=1 
    ZSCAN30ENSP000003297384STRING: ENSP00000329738
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated ----

    Find genes that share ontologies with ZNF232           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF232 (ZN232)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF232 gene: 
    NM_014519.2  

    Unigene Cluster for ZNF232:

    Zinc finger protein 232
    Hs.279914  [show with all ESTs]
    Unigene Representative Sequence: NM_014519
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000575898 ENST00000250076(uc002gar.1 uc002gat.3) ENST00000574735
    ENST00000573015 ENST00000570486(uc010vsv.1) ENST00000572468 ENST00000575538
    ENST00000571076 ENST00000416429
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF232
      QuantiFast Probe-based Assays in human, mouse, rat ZNF232

    Additional mRNA sequence: 

    AK057506.1 AK225622.1 AK297835.1 AK298190.1 AK316369.1 BC016039.1 Y15067.1 

    10 DOTS entries:

    DT.110386  DT.100020080  DT.100017498  DT.95370872  DT.40295634  DT.110387  DT.97775979  DT.100814299 
    DT.95312150  DT.92422320 

    Selected AceView cDNA sequences (see all 82):

    BQ071478 BQ187614 CR620901 M77876 BQ184519 CA307374 CA449335 F03577 
    AI972858 T87696 CA415387 BE513403 CR592276 NM_014519 AV718209 AI400917 
    AI565571 AI690915 Z44500 AW629085 Y15067 AA974380 AA315122 BP338103 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF232 (see all 9)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b · 9c
    SP1:                                                  -     -                       -                           
    SP2:                                                  -     -                       -           -               
    SP3:                                                  -     -     -                                             
    SP4:                                                                                                            
    SP5:                                                              -                                             


    ECgene alternative splicing isoforms for ZNF232

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF232 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCAGAAAAGA
    ZNF232 Expression
    About this image

    ZNF232 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF232 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.279914

    UniProtKB/Swiss-Prot: ZN232_HUMAN, Q9UNY5
    Tissue specificity: Ubiquitous. Higher expression seen in the liver, testis and ovary

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of mammals.

    Orthologs for ZNF232 gene from Selected species (see all 3)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia --
    --
    Uncharacterized protein
    51(a)
    29(a)
    1 ↔ many
    1 ↔ many
    35(25410439-25411047)
    35(25263532-25268139)


    ENSEMBL Gene Tree for ZNF232 (if available)
    TreeFam Gene Tree for ZNF232 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF232 gene
    ZNF4462  ZSCAN92  ZKSCAN12  ZNF3972  ZNF5002  ZNF2132  ZSCAN302  ZNF1742  
    ZNF32  ZKSCAN42  ZNF3962  ZSCAN122  ZNF3942  ZSCAN212  ZSCAN232  ZNF1652  
    ZSCAN162  ZKSCAN82  ZSCAN222  ZSCAN312  ZNF242  ZKSCAN32  ZNF182  
    Selected SIMAP similar genes for ZNF232 using alignment to 4 protein entries:     ZN232_HUMAN (see all proteins) (see all similar genes):
    ZNF78L1    kr-znf3    ZNF107    ZNF383    ZNF519    ZNF682
    ZFP90    ZNF28    ZNF283    ZNF347    ZNF429    ZNF790
    ZNF813    ZNF93    ZNF83    DKFZp686L0787    LOC100128510    ZNF132

    Find genes that share paralogs with ZNF232           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for ZNF232
    PGOHUM00000259355 PGOHUM00000260156


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF232 (see all 442)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0355734
    A colorectal cancer sample4--see VAR_0355732 A V mis40--------
    rs1834641641,2
    --5008600(+) ATCACA/GAGGTC 1 -- int10--------
    rs1465988731,2
    --5008619(+) GAGAAC/TAGCCT 1 -- int10--------
    rs1859026181,2
    --5008754(+) GGAGGC/TTGCAG 1 -- int10--------
    rs1413385801,2
    --5008799(+) CGACAC/GAGCAA 1 -- int10--------
    rs1137489091,2
    F--5008811(+) ACTCCG/ATCTCA 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs1512725271,2
    C--5008834(+) AACAAA/CATTCT 1 -- int10--------
    rs600186051,2
    F--5008847(+) TGAGGC/TAGACA 1 -- int10--------
    rs116578271,2
    C,F,H--5008957(+) CAGAGG/AACATG 1 -- int1 ese323Minor allele frequency- A:0.12NS EA NA WA 2764
    rs1503910861,2
    C--5009043(+) ACTTAA/TAACTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF232 (5008836 - 5026411 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for ZNF232:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv907624CNV Loss21882294
    nsv907620CNV Loss21882294
    nsv907623CNV Loss21882294
    esv25210CNV Gain19812545

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease from the University of Copenhagen DISEASES database for ZNF232:
    Asperger syndrome

    Find genes that share disorders with ZNF232           About GenesLikeMe


    Export disorders for ZNF232 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF232 gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with ZNF232)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ZNF232: structure and expression analysis of a novel human C(2)H(2) zinc finger gene, member of the SCAN/LeR domain subfamily. (PubMed id 11311944)1, 2, 3 Mavrogiannis L.A.... Moschonas N.K. (Biochim. Biophys. Acta 2001)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    4. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (Cell 2010)
    5. The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (Science 2006)
    6. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)2 Zody M.C.... Nusbaum C. (Nature 2006)
    7. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
    8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    9. An investigation into the human serum &quot;interactome&quot;. (PubMed id 15174051)1 Zhou M....Conrads T.P. (Electrophoresis 2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7775 HGNC: 13026 AceView: ZNF232 Ensembl:ENSG00000167840 euGenes: HUgn7775
    ECgene: ZNF232 H-InvDB: ZNF232

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for ZNF232 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF232 gene:
    Search GeneIP for patents involving ZNF232

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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