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Aliases for ZNF223 Gene

Aliases for ZNF223 Gene

  • Zinc Finger Protein 223 2 3 5

External Ids for ZNF223 Gene

Previous GeneCards Identifiers for ZNF223 Gene

  • GC19U990143
  • GC19P044940
  • GC19P049224
  • GC19P049240
  • GC19P049248
  • GC19P044556
  • GC19P040988
  • GC19P044555

Summaries for ZNF223 Gene

Entrez Gene Summary for ZNF223 Gene

  • This gene encodes a protein containing a Kruppel-associated box domain and multiple zinc finger domains. The function of this protein has yet to be determined. [provided by RefSeq, Mar 2014]

GeneCards Summary for ZNF223 Gene

ZNF223 (Zinc Finger Protein 223) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ENSG00000267022.

UniProtKB/Swiss-Prot for ZNF223 Gene

  • May be involved in transcriptional regulation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF223 Gene

Genomics for ZNF223 Gene

Regulatory Elements for ZNF223 Gene

Enhancers for ZNF223 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F044206 0.4 ENCODE 27.7 +156.2 156216 1.4 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF302 CBX5 ZNF416 ZNF45 ZNF180 ZNF234 ZNF225 ZNF224 ZNF284 XRCC1 ZNF223 ZNF230 NECTIN2
GH19F043773 1.2 FANTOM5 Ensembl ENCODE 27.1 -271.7 -271682 12.9 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YBX1 ZNF2 ZNF302 ZNF45 ZNF180 ZNF225 ZNF284 ZNF224 ZNF234 KCNN4 XRCC1 ZNF223 LOC100505715
GH19F043702 0.7 Ensembl 27.1 -348.5 -348467 0.2 ATF1 SIN3A ZNF2 GLIS2 ZNF302 KLF7 REST ZNF623 ZNF518A ZFP41 ZNF45 ZNF225 ZNF180 ZNF284 ZNF224 ZNF223 ZNF234 PINLYP ZNF230 CEACAM19
GH19F044093 0.5 ENCODE 25 +43.4 43392 2.1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF302 ZNF143 SP3 ZNF180 ZNF45 ZNF224 ZNF234 ZNF155 ZNF225 ZNF284 ZNF223 XRCC1 BCAM
GH19F043618 1.2 FANTOM5 ENCODE 22.9 -431.7 -431709 2.6 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF45 ZNF180 ZNF224 ZNF234 ZNF284 ZNF225 XRCC1 ZNF223 ZNF230 CEACAMP10
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF223 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF223 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001419397 534 2600 PKNOX1 CREB3L1 WRNIP1 ZFP64 SIN3A ARID4B ZNF2 YY1 ZNF302 ZNF416

Transcription factor binding sites by QIAGEN in the ZNF223 gene promoter:

Genomic Location for ZNF223 Gene

Chromosome:
19
Start:
44,051,367 bp from pter
End:
44,067,994 bp from pter
Size:
16,628 bases
Orientation:
Plus strand

Genomic View for ZNF223 Gene

Genes around ZNF223 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF223 Gene

Proteins for ZNF223 Gene

  • Protein details for ZNF223 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UK11-ZN223_HUMAN
    Recommended name:
    Zinc finger protein 223
    Protein Accession:
    Q9UK11
    Secondary Accessions:
    • Q15736
    • Q8TBJ3
    • Q9HCA9

    Protein attributes for ZNF223 Gene

    Size:
    482 amino acids
    Molecular mass:
    55763 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAB03531.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ZNF223 Gene

Post-translational modifications for ZNF223 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF223 Gene

No data available for DME Specific Peptides for ZNF223 Gene

Domains & Families for ZNF223 Gene

Gene Families for ZNF223 Gene

Protein Domains for ZNF223 Gene

Suggested Antigen Peptide Sequences for ZNF223 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UK11

UniProtKB/Swiss-Prot:

ZN223_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 10 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 10 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF223: view

Function for ZNF223 Gene

Molecular function for ZNF223 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF223 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 10449920
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF223: view
genes like me logo Genes that share phenotypes with ZNF223: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF223 Gene

Localization for ZNF223 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF223 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF223 Gene COMPARTMENTS Subcellular localization image for ZNF223 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF223 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA,IBA --
genes like me logo Genes that share ontologies with ZNF223: view

Pathways & Interactions for ZNF223 Gene

SuperPathways for ZNF223 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF223: view

Pathways by source for ZNF223 Gene

2 Reactome pathways for ZNF223 Gene

Gene Ontology (GO) - Biological Process for ZNF223 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IBA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZNF223: view

No data available for SIGNOR curated interactions for ZNF223 Gene

Transcripts for ZNF223 Gene

Unigene Clusters for ZNF223 Gene

Zinc finger protein 223:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF223 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b
SP1: - - -
SP2: -
SP3:
SP4: - - - -
SP5:

Relevant External Links for ZNF223 Gene

GeneLoc Exon Structure for
ZNF223
ECgene alternative splicing isoforms for
ZNF223

Expression for ZNF223 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF223 Gene

Protein differential expression in normal tissues from HIPED for ZNF223 Gene

This gene is overexpressed in Heart (34.7) and Monocytes (34.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF223 Gene



Protein tissue co-expression partners for ZNF223 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF223 Gene:

ZNF223

SOURCE GeneReport for Unigene cluster for ZNF223 Gene:

Hs.720813
genes like me logo Genes that share expression patterns with ZNF223: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF223 Gene

Orthologs for ZNF223 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ZNF223 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF223 34
  • 99.37 (n)
-- 35
  • 99 (a)
OneToMany
Species where no ortholog for ZNF223 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF223 Gene

ENSEMBL:
Gene Tree for ZNF223 (if available)
TreeFam:
Gene Tree for ZNF223 (if available)

Paralogs for ZNF223 Gene

(511) SIMAP similar genes for ZNF223 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZNF223: view

Variants for ZNF223 Gene

Sequence variations from dbSNP and Humsavar for ZNF223 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10164312 -- 44,054,675(+) ccccc(A/G)gttgg intron-variant
rs10164320 -- 44,055,069(+) GCCAC(A/C)CTTTC intron-variant
rs10404112 -- 44,054,217(+) accca(C/G)gctgg intron-variant
rs11083737 -- 44,059,084(+) tttgg(C/G)tgttc intron-variant
rs111340000 -- 44,065,795(+) CTGGT(C/T)CCGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF223 Gene

Variant ID Type Subtype PubMed ID
nsv833840 CNV gain 17160897
nsv963058 CNV duplication 23825009

Variation tolerance for ZNF223 Gene

Residual Variation Intolerance Score: 61.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.02; 50.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF223 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF223

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF223 Gene

Disorders for ZNF223 Gene

Relevant External Links for ZNF223

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF223

No disorders were found for ZNF223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF223 Gene

Publications for ZNF223 Gene

  1. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. (PMID: 12743021) Shannon M. … Stubbs L. (Genome Res. 2003) 3 4 64
  2. Comparative analysis of a conserved zinc finger gene cluster on human chromosome 19q and mouse chromosome 7. (PMID: 8617494) Shannon M. … Stubbs L. (Genomics 1996) 3 4 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3 64
  5. Next-generation sequencing to generate interactome datasets. (PMID: 21516116) Yu H. … Vidal M. (Nat. Methods 2011) 3 64

Products for ZNF223 Gene

Sources for ZNF223 Gene

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