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ZNF223 Gene

protein-coding   GIFtS: 45
GCID: GC19P044555

Zinc Finger Protein 223

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Zinc Finger Protein 2231 2
Homo Sapiens Zinc Finger Protein 2232
KRAB A Domain2

External Ids:    HGNC: 130161   Entrez Gene: 77662   Ensembl: ENSG000001783867   UniProtKB: Q9UK113   
ORGUL members:         

Export aliases for ZNF223 gene to outside databases

Previous GC identifers: GC19U990143 GC19P044940 GC19P049224 GC19P049240 GC19P049248 GC19P044556 GC19P040988


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ZNF223 Gene:
This gene encodes a protein containing a Kruppel-associated box domain and multiple zinc finger domains. The
function of this protein has yet to be determined. (provided by RefSeq, Mar 2014)

GeneCards Summary for ZNF223 Gene:
ZNF223 (zinc finger protein 223) is a protein-coding gene. An important paralog of this gene is ZNF229.

UniProtKB/Swiss-Prot: ZN223_HUMAN, Q9UK11
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF223 gene promoter:
         NCX/Ncx   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZNF223 promoter sequence
   Search Chromatin IP Primers for ZNF223

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF223


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.31   HGNC cytogenetic band: 19q13.2

ZNF223 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF223 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P044555:  view genomic region     (about GC identifiers)

Start:
44,555,520 bp from pter      End:
44,572,144 bp from pter
Size:
16,625 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZN223_HUMAN, Q9UK11 (See protein sequence)
Recommended Name: Zinc finger protein 223  
Size: 482 amino acids; 55763 Da
Sequence caution: Sequence=AAB03531.1; Type=Erroneous gene model prediction;
Secondary accessions: Q15736 Q8TBJ3 Q9HCA9

Explore the universe of human proteins at neXtProt for ZNF223: NX_Q9UK11

Explore proteomics data for ZNF223 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF223 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_037493.3  
    ENSEMBL proteins: 
     ENSP00000401947   ENSP00000467561   ENSP00000468129   ENSP00000467647  
    Reactome Protein details: Q9UK11

    ZNF223 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for ZNF223

     
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    Cloud-Clone Corp. ELISAs for ZNF223
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    Search eBioscience for ELISAs for ZNF223 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9UK11

    ProtoNet protein and cluster: Q9UK11

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: ZN223_HUMAN, Q9UK11
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 10 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZNF223           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN223_HUMAN, Q9UK11
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding NAS10449920
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF223           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZNF223:
     Decreased Hepatitis C virus re  Increased homologous recombina 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF223
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for ZNF223
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for ZNF223

    miRNA
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    Block miRNA regulation of human, mouse, rat ZNF223 using miScript Target Protectors
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    SwitchGear 3'UTR luciferase reporter plasmidZNF223 3' UTR sequence
    Inhib. RNA
    Products:
        
    OriGene RNAi products in human, mouse, rat for ZNF223
    Predesigned siRNA for gene silencing in human, mouse, rat ZNF223

    Gene Editing
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    Clone
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    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZNF223
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF223

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF223


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN223_HUMAN, Q9UK11: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF223           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF223 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZNF223           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF223
        Generic Transcription Pathway


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF223
    Interactions:

        Search GeneGlobe Interaction Network for ZNF223

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for ZNF223 (ENSP000004019474) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--
    GO:0008150biological_process ND--

    Find genes that share ontologies with ZNF223           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF223 (ZN223)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF223 gene: 
    NM_013361.5  

    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000588518 ENST00000434772(uc002oyf.1) ENST00000585552 ENST00000593088
    ENST00000591850
    miRNA
    Products:
         
    Block miRNA regulation of human, mouse, rat ZNF223 using miScript Target Protectors
    Search for qRT-PCR Assays for microRNAs that regulate ZNF223
    SwitchGear 3'UTR luciferase reporter plasmidZNF223 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for ZNF223
    Predesigned siRNA for gene silencing in human, mouse, rat ZNF223
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    OriGene clones in human, mouse for ZNF223 (see all 6)
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    GenScript: all cDNA clones in your preferred vector: ZNF223 (NM_013361)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZNF223
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF223
    Primer
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    OriGene qPCR primer pairs and template standards for ZNF223
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat ZNF223
      QuantiTect SYBR Green Assays in human, mouse, rat ZNF223
      QuantiFast Probe-based Assays in human, mouse, rat ZNF223

    Selected AceView cDNA sequences (see all 26):

    BX097098 BU146103 BX280816 CB153355 BX482115 CB529561 AY166789 CB154437 
    AI922807 BI820977 BM837673 BG714477 NM_013361 BC022466 BM008659 CB854629 
    BE645380 BX483259 AA318797 BX491847 AW296104 AF187989 BF760198 AI949871 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF223    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b
    SP1:                                                  -     -     -               
    SP2:                                                  -                           
    SP3:                                                                              
    SP4:        -     -     -           -                                             
    SP5:                                                                              


    ECgene alternative splicing isoforms for ZNF223

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF223 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF223 Expression
    About this image

    ZNF223 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF223 Protein Expression
        Custom PCR Arrays for ZNF223
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF223

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and chimp.

    Orthologs for ZNF223 gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chimpanzee
    (Pan troglodytes)
    Mammalia ZNF2231 zinc finger protein 223 99.37(n)
    98.95(a)
      456404  XM_003316434.2  XP_003316482.1 


    ENSEMBL Gene Tree for ZNF223 (if available)
    TreeFam Gene Tree for ZNF223 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF223 gene
    ZNF2292  ZNF2302  ZNF1552  ZNF2272  ZNF2242  ZNF2342  ZNF2252  ZNF2262  
    ZNF2142  ZNF2222  ZNF2842  ENSG000002671732  ZNF452  ZNF2352  ZNF2212  ZNF2852  
    ENSG000002670222  ZNF1122  ZNF2332  
    Selected SIMAP similar genes for ZNF223 using alignment to 5 protein entries:     ZN223_HUMAN (see all proteins) (see all similar genes):
    ZNF222    ZNF155    ZNF224    ZNF230    ZNF625-ZNF20    ZNF225
    ZNF221    ZNF177    ZNF226    ZNF112    MGC12518    ZNF596
    ZNF78L1    ZNF669    ZNF625    LOC101928664    ZNF234    ZNF83

    Find genes that share paralogs with ZNF223           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF223 (see all 394)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs767972411,2
    F--44554289(+) ACCAAG/CAAATG 1 -- us2k11Minor allele frequency- C:0.02NA 120
    rs1400693841,2
    --44554384(+) GTGTCA/CGATTG 1 -- us2k10--------
    rs1853809501,2
    --44554387(+) TCAGAC/TTGATA 1 -- us2k10--------
    rs48036721,2
    C,F,A--44554532(+) gaggaG/Cacagc 1 -- us2k1 tfbs310Minor allele frequency- C:0.32NA WA CSA EA 371
    rs558526491,2
    C,F--44554600(+) CTGGAC/TTAGGG 1 -- us2k13Minor allele frequency- T:0.16WA 122
    rs118783171,2
    C,F,H--44554673(+) tccctT/Cagttc 1 -- us2k16Minor allele frequency- C:0.17NA WA 128
    rs1455881141,2
    --44554774(+) GTGTGC/TTCCAA 1 -- us2k10--------
    rs1891142641,2
    --44554804(+) ATTAAC/TAGTCA 1 -- us2k10--------
    rs118813551,2
    C,F,H--44554821(+) aaactA/Gaagca 1 -- us2k18Minor allele frequency- G:0.07NS EA WA NA 544
    rs1473258531,2
    --44554836(+) GGCCTC/TTGAAC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF223 (44555520 - 44572144 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF223:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv833840CNV Gain17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF223
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF223

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF223 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF223)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. (PubMed id 12743021)1, 2 Shannon M.... Stubbs L. (Genome Res. 2003)
    2. Comparative analysis of a conserved zinc finger gene cluster on human chromosome 19q and mouse chromosome 7. (PubMed id 8617494)1, 2 Shannon M....Stubbs L. (Genomics 1996)
    3. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    7. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    9. Coding region intron/exon organization, alternative splicing and X- chromosome inactivation of the KRAB/FPB-domain-containing human zinc finger gene ZNF41. (PubMed id 10449920)1 Rosati M.... Grimaldi G. (Cytogenet. Cell Genet. 1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7766 HGNC: 13016 AceView: ZNF223 Ensembl:ENSG00000178386 euGenes: HUgn7766
    ECgene: ZNF223 H-InvDB: ZNF223

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF223 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF223 gene:
    Search GeneIP for patents involving ZNF223

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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