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ZNF22 Gene

protein-coding   GIFtS: 50
GCID: GC10P045496

Zinc Finger Protein 22

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 221 2     ZNF4222
KOX152 3 5     Zfp4222
Zinc Finger Protein KOX152 3     Krox-26 Protein2
Zinc Finger Protein Krox-262 3     Zinc Finger Protein 22 (KOX 15)2
HKR-T12     KROX263

External Ids:    HGNC: 130121   Entrez Gene: 75702   Ensembl: ENSG000001655127   OMIM: 1945295   UniProtKB: P170263   

Export aliases for ZNF22 gene to outside databases

Previous GC identifers: GC10P044785 GC10P044964 GC10P045271 GC10P044779 GC10P044815 GC10P042021


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF22 Gene:
ZNF22 (zinc finger protein 22) is a protein-coding gene.

UniProtKB/Swiss-Prot: ZNF22_HUMAN, P17026
Function: Binds DNA through the consensus sequence 5'-CAATG-3'. May be involved in transcriptional regulation and
may play a role in tooth formation (By similarity)

Gene Wiki entry for ZNF22 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF22 gene promoter:
         Bach1   RFX1   p53   ATF-2   Tal-1beta   c-Rel   FOXJ2 (long isoform)   HFH-1   FOXJ2   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZNF22 promoter sequence
   Search Chromatin IP Primers for ZNF22

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF22


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q11   Ensembl cytogenetic band:  10q11.21   HGNC cytogenetic band: 10q11

ZNF22 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF22 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P045496:  view genomic region     (about GC identifiers)

Start:
45,495,923 bp from pter      End:
45,500,777 bp from pter
Size:
4,855 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZNF22_HUMAN, P17026 (See protein sequence)
Recommended Name: Zinc finger protein 22  
Size: 224 amino acids; 25915 Da
Secondary accessions: Q5T741 Q96FM4

Explore the universe of human proteins at neXtProt for ZNF22: NX_P17026

Explore proteomics data for ZNF22 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF22 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_008894.2  
    ENSEMBL proteins: 
     ENSP00000298299  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P17026

    ProtoNet protein and cluster: P17026

    UniProtKB/Swiss-Prot: ZNF22_HUMAN, P17026
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 5 C2H2-type zinc fingers


    Find genes that share domains with ZNF22           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZNF22_HUMAN, P17026
    Function: Binds DNA through the consensus sequence 5'-CAATG-3'. May be involved in transcriptional regulation and
    may play a role in tooth formation (By similarity)

         Genatlas biochemistry entry for ZNF22:
    zinc finger protein 22 (KOX15) (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding ISS--
    GO:0008270zinc ion binding TAS1946370
    GO:0046872metal ion binding ----
         
    Find genes that share ontologies with ZNF22           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZNF22:
     Decreased viability  Increased cell number in S 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF22

    miRNA
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    hsa-miR-1283 hsa-miR-3120-3p hsa-miR-1179 hsa-miR-3160-3p hsa-miR-374c hsa-miR-3675-3p hsa-miR-655 hsa-miR-3613-3p
    SwitchGear 3'UTR luciferase reporter plasmidZNF22 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZNF22_HUMAN, P17026: Nucleus (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    plasma membrane4
    cytosol2

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ISS--
    GO:0005730NOT nucleolus IDA--
    GO:0005886plasma membrane ----

    Find genes that share ontologies with ZNF22           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF22
    Interactions:

        Search GeneGlobe Interaction Network for ZNF22

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated NAS14630903
    GO:0042476odontogenesis NAS14630903

    Find genes that share ontologies with ZNF22           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF22



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF22 gene: 
    NM_006963.4  

    Unigene Clusters for ZNF22:

    Zinc finger protein 22
    Hs.462693  [show with all ESTs], Hs.655124  [show with all ESTs]
    Unigene Representative Sequences: BC041139, BC026193
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000298299(uc001jbw.3)
    miRNA
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    hsa-miR-1283 hsa-miR-3120-3p hsa-miR-1179 hsa-miR-3160-3p hsa-miR-374c hsa-miR-3675-3p hsa-miR-655 hsa-miR-3613-3p
    SwitchGear 3'UTR luciferase reporter plasmidZNF22 3' UTR sequence
    Inhib. RNA
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF22
      QuantiFast Probe-based Assays in human, mouse, rat ZNF22

    Additional mRNA sequence: BC026193.1 

    9 DOTS entries:

    DT.418040  DT.100792834  DT.100792833  DT.100800733  DT.100792837  DT.121228393  DT.121228411  DT.121228425 
    DT.100792831 

    Selected AceView cDNA sequences (see all 221):

    F08396 BU681909 BM893887 AA807887 BM799873 CA447313 BG504549 W77876 
    X52346 AL711382 AI801026 AI468783 AL539503 AA235950 AI095573 AA642645 
    F03193 BI755879 BX418799 AA731647 BM454615 AA975044 AA903307 AA748323 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF22 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAAAACTAGG
    ZNF22 Expression
    About this image

    ZNF22 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF22 Protein Expression

    SOURCE GeneReport for Unigene clusters: Hs.462693 Hs.655124

    UniProtKB/Swiss-Prot: ZNF22_HUMAN, P17026
    Tissue specificity: In the embryo, expressed in developing craniofacial structures including dental epithelium of
    maxillary molar tooth organs, tongue epithelium and muscle, and craniofacial bone osteoblasts. In the adult,
    expressed in mesoderm-derived tissues such as skeletal muscle, heart, kidney and liver. Intermediate expression
    in spleen, thymus and brain. Low levels in endoderm-derived tissues such as intestine and colon

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF22 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp4221 , 5 zinc finger protein 4221, 5 82.36(n)1
    86.55(a)1
      6 (53.83 cM)5
    672551  NM_026057.21  NP_080333.11 
     1166240165 
    chicken
    (Gallus gallus)
    Aves ZNF226
    zinc finger protein 22
    18(a)
    1 ↔ 1
    4(70157581-70166972)
    lizard
    (Anolis carolinensis)
    Reptilia ZNF226
    zinc finger protein 22
    29(a)
    1 ↔ 1
    GL344573.1(52125-52946)


    ENSEMBL Gene Tree for ZNF22 (if available)
    TreeFam Gene Tree for ZNF22 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF22 gene
    Selected SIMAP similar genes for ZNF22 using alignment to 1 protein entry:     ZNF22_HUMAN(see all similar genes):
    kr-znf3    DKFZp686N14223    ZNF286A    ZNF286B    ZNF78L1    ZFP41
    ZNF773    ZNF3    ZNF530    ZNF549    ZNF569    ZNF658B
    ZNF761    ZNF    DKFZp686O111    ZNF268    ZNF667    ZNF7

    Find genes that share paralogs with ZNF22           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF22 (see all 82)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0355664
    A breast cancer sample4--see VAR_0355662 H L mis40--------
    rs1899331601,2
    --45498598(+) TTTGCA/GTTTAT 1 -- int10--------
    rs1821455371,2
    --45498631(+) TGCAAG/TTTTGG 1 -- int10--------
    rs1511215611,2
    C--45498875(+) GGCCTA/GTGAGA 2 Y C mis10--------
    rs2010026721,2
    --45498905(+) GCAGCA/GGCAGA 2 Q R mis10--------
    rs1880125641,2
    C--45498909(+) CGGCAA/GAAGTG 2 Q syn10--------
    rs3712083641,2
    C--45498950(+) CAGTAA/GACTCA 2 K R mis10--------
    rs37400931,2,,4
    C,F,H--45499009(-) CTGACT/CGAAAC 2 /S /G mis119Minor allele frequency- C:0.04NS EA NA EU 7644
    rs1463349811,2
    C,F--45499122(+) CATCGA/GCGGAT 2 R syn12Minor allele frequency- G:0.00NA EU 5841
    rs1395039981,2
    C--45499137(+) ACGGGG/AGAAAA 2 /G syn11Minor allele frequency- A:0.00NA 4542

    HapMap Linkage Disequilibrium report for ZNF22 (45495923 - 45500777 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for ZNF22:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv831846CNV Loss17160897
    nsv831848CNV Gain17160897

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing ZNF22
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF22

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 194529    OMIM disorders: --

    1 disease from the University of Copenhagen DISEASES database for ZNF22:
    Tooth agenesis

    Find genes that share disorders with ZNF22           About GenesLikeMe


    Export disorders for ZNF22 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF22 gene, integrated from 10 sources (see all 18):
    (articles sorted by number of sources associating them with ZNF22)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human KROX-26/ZNF22 gene is expressed at sites of tooth formation and maps to the locus for permanent tooth agenesis (He-Zhao deficiency). (PubMed id 14630903)1, 2, 9 Gao Y.... Ganss B. (J. Dent. Res. 2003)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Isolation of a cDNA clone encoding a zinc finger protein highly expressed in T-leukemia lines. (PubMed id 1421376)1, 2 Wu B.Y.... Nabel G.J. (Blood 1992)
    4. Characterization and mapping of human genes encoding zinc finger proteins. (PubMed id 1946370)1, 2 Bray P.L.... Dawid I.B. (Proc. Natl. Acad. Sci. U.S.A. 1991)
    5. Multiple genes encoding zinc finger domains are expressed in human T cells. (PubMed id 2288909)1, 2 Thiesen H.-J. (New Biol. 1990)
    6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    7. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
    8. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    9. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7570 HGNC: 13012 AceView: ZNF22 Ensembl:ENSG00000165512 euGenes: HUgn7570
    ECgene: ZNF22 H-InvDB: ZNF22

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF22 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF22 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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