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Aliases for ZNF213-AS1 Gene

Subcategory (RNA class) for ZNF213-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF213-AS1 Gene

  • ZNF213 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for ZNF213-AS1 Gene

Summaries for ZNF213-AS1 Gene

GeneCards Summary for ZNF213-AS1 Gene

ZNF213-AS1 (ZNF213 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF213-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF213-AS1 Gene

Genomics for ZNF213-AS1 Gene

Regulatory Elements for ZNF213-AS1 Gene

Enhancers for ZNF213-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H003156 1.7 FANTOM5 ENCODE dbSUPER 51.5 -23.9 -23912 3 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF207 ZNF75A ZNF213-AS1 ZNF205 E4F1 CREBBP ENSG00000261938 RNPS1 PDPK2P LOC652276 MTCO1P28
GH16H002147 2 FANTOM5 Ensembl ENCODE dbSUPER 42.5 +979.1 979092 17 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC CRAMP1 ENSG00000260051 ENSG00000261505 TELO2 TBL3 UNKL E4F1 TSC2 SRRM2 ZNF213-AS1
GH16H003148 1.7 Ensembl ENCODE dbSUPER 42.2 -16.3 -16304 4 MLX ZFP64 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D SSRP1 CREBBP E4F1 ZNF263 THOC6 ZNF597 ZNF213-AS1 SRRM2 ZNF205 AMDHD2 ENSG00000261938
GH16H003182 1.4 ENCODE dbSUPER 39.7 -48.6 -48589 1 PKNOX1 ARNT ARID4B SIN3A ZNF2 FOS ZHX2 MXD4 REST ZNF592 ZNF75A ZNF213-AS1 ENSG00000261938 E4F1 CREBBP RNPS1 PDPK2P ZNF597 LOC652276 ZSCAN32
GH16H003019 1.4 ENCODE dbSUPER 35.5 +112.6 112580 5 MLX DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 ZC3H11A NFYC MEF2D ENSG00000261938 ZNF263 ZNF75A E4F1 TSC2 ERVK13-1 SRRM2 CREBBP ZNF597 SNHG19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF213-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF213-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082609 82 2401 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3

Genomic Location for ZNF213-AS1 Gene

Chromosome:
16
Start:
3,110,460 bp from pter
End:
3,134,882 bp from pter
Size:
24,423 bases
Orientation:
Minus strand

Genomic View for ZNF213-AS1 Gene

Genes around ZNF213-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF213-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF213-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF213-AS1 Gene

Proteins for ZNF213-AS1 Gene

Post-translational modifications for ZNF213-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF213-AS1 Gene

Domains & Families for ZNF213-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF213-AS1 Gene

Function for ZNF213-AS1 Gene

Phenotypes From GWAS Catalog for ZNF213-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF213-AS1 Gene

Localization for ZNF213-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF213-AS1 Gene

Pathways & Interactions for ZNF213-AS1 Gene

SuperPathways for ZNF213-AS1 Gene

No Data Available

Interacting Proteins for ZNF213-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF213-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF213-AS1 Gene

Drugs & Compounds for ZNF213-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF213-AS1 Gene

mRNA/cDNA for ZNF213-AS1 Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF213-AS1 Gene

No ASD Table

Relevant External Links for ZNF213-AS1 Gene

GeneLoc Exon Structure for
ZNF213-AS1
ECgene alternative splicing isoforms for
ZNF213-AS1

Expression for ZNF213-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF213-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF213-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF213-AS1 Gene

Orthologs for ZNF213-AS1 Gene

Evolution for ZNF213-AS1 Gene

ENSEMBL:
Gene Tree for ZNF213-AS1 (if available)
TreeFam:
Gene Tree for ZNF213-AS1 (if available)

No data available for Orthologs for ZNF213-AS1 Gene

Paralogs for ZNF213-AS1 Gene

No data available for Paralogs for ZNF213-AS1 Gene

Variants for ZNF213-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF213-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000337643 -- 3,129,940(+) CACAT(G/T)GCAGA intron-variant
rs1000445393 -- 3,133,235(+) AAGTG(C/G)AAGTT intron-variant, upstream-variant-2KB
rs1000476568 -- 3,133,054(+) GCAGT(A/G)AGCCA intron-variant
rs1000486670 -- 3,134,851(+) AGCCT(C/T)GCCTT nc-transcript-variant, upstream-variant-2KB
rs1000570780 -- 3,134,575(+) GAGGC(C/T)AGAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF213-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv457355 CNV gain 19166990
nsv509589 CNV insertion 20534489
nsv571248 CNV loss 21841781
nsv571249 CNV gain 21841781
nsv833125 CNV loss 17160897

Relevant External Links for ZNF213-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF213-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF213-AS1 Gene

Disorders for ZNF213-AS1 Gene

Relevant External Links for ZNF213-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF213-AS1

No disorders were found for ZNF213-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF213-AS1 Gene

Publications for ZNF213-AS1 Gene

  1. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B … Boerwinkle E (Genetic epidemiology 2013) 3 60

Products for ZNF213-AS1 Gene

Sources for ZNF213-AS1 Gene

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