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ZNF212 Gene

protein-coding GIFtS: 52
GCID: GC07P148936

Zinc Finger Protein 212

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Zinc Finger Protein 212¹ ²
ZNFC150² ³ ⁵
Zinc Finger Protein C2H2-150² ³
ZNF182² ⁵
C2H2-150²

External Ids:	HGNC: 13004¹	Entrez Gene: 7988²	Ensembl: ENSG00000170260⁷	OMIM: 602386⁵	UniProtKB: Q9UDV6³

Export aliases for ZNF212 gene to outside databases

Previous GC identifers: GC07P147194 GC07P148251 GC07P148328 GC07P148374 GC07P148567 GC07P143014

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ZNF212 Gene:

This gene belongs to the C2H2-type zinc finger gene family. The zinc finger proteins are involved in gene

regulation and development, and are quite conserved throughout evolution. Like this gene product, a third of the

zinc finger proteins containing C2H2 fingers also contain the KRAB domain, which has been found to be involved in

protein-protein interactions. (provided by RefSeq, Jul 2008)

GeneCards Summary for ZNF212 Gene:

ZNF212 (zinc finger protein 212) is a protein-coding gene. GO annotations related to this gene include identical protein binding. An important paralog of this gene is ZNF282.

UniProtKB/Swiss-Prot: ZN212_HUMAN, Q9UDV6

Function: May be involved in transcriptional regulation

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:

NC_000007.13 NT_007933.16 NC_018918.2

Regulatory elements:

Regulatory transcription factor binding sites in the ZNF212 gene promoter:
AP-2alpha isoform 3 Lmo2 Nkx2-5 AP-2alpha isoform 2 STAT3 AP-2alpha isoform 4 AP-2alpha AP-2alphaA
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZNF212 promoter sequence

Search Chromatin IP Primers for ZNF212

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF212

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q36.1 Ensembl cytogenetic band: 7q36.1 HGNC cytogenetic band: 7q36.1

ZNF212 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF212 gene location

GeneLoc information about chromosome 7 GeneLoc Exon Structure

GeneLoc location for GC07P148936: view genomic region (about GC identifiers)

Start:	148,936,742 bp from pter	End:	148,952,700 bp from pter
Size:	15,959 bases	Orientation:	plus strand

1 alternative location:

Chr7+,CRA_TCAG 148,274,750-148,290,707

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN212_HUMAN, Q9UDV6 (See protein sequence)

Recommended Name: Zinc finger protein 212

Size: 495 amino acids; 55447 Da

Sequence caution: Sequence=AAC51296.1; Type=Erroneous initiation; Sequence=AAD45826.2; Type=Erroneous initiation;

Secondary accessions: B2RCF4 Q13396 Q8N664

Explore the universe of human proteins at neXtProt for ZNF212: NX_Q9UDV6

Explore proteomics data for ZNF212 at MOPED

Post-translational modifications:

Modification sites at neXtProt

Modification sites at PhosphoSitePlus

See ZNF212 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_036388.2

ENSEMBL proteins:

ENSP00000338572 ENSP00000418281 ENSP00000418167 ENSP00000419419 ENSP00000419261

Reactome Protein details: Q9UDV6

ZNF212 Human Recombinant Protein Products:

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:

ZNF: Zinc fingers, C2H2-type

5 InterPro protein domains:

IPR001909 Krueppel-associated_box

IPR015880 Znf_C2H2-like

IPR013087 Znf_C2H2/integrase_DNA-bd

IPR022137 DUF3669_Znf

IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q9UDV6

ProtoNet protein and cluster: Q9UDV6

1 Blocks protein domain: IPB001909 KRAB box

UniProtKB/Swiss-Prot: ZN212_HUMAN, Q9UDV6

Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family

Similarity: Contains 4 C2H2-type zinc fingers

Similarity: Contains 1 KRAB domain

Find genes that share domains with ZNF212 About GenesLikeMe

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: ZN212_HUMAN, Q9UDV6

Function: May be involved in transcriptional regulation

Genatlas biochemistry entry for ZNF212:

zinc finger protein 122,KRAB subfamily (C2H2 Kruppel-like)

Gene Ontology (GO): Selected molecular function terms (see all 6): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	--	--
GO:0003677	DNA binding	IEA	--
GO:0005515	protein binding	IPI	18255255
GO:0008270	zinc ion binding	NAS	7633419
GO:0042802	identical protein binding	IPI	18255255

Find genes that share ontologies with ZNF212 About GenesLikeMe

Animal Models:

genOway: Develop your customized and physiologically relevant rodent model for ZNF212

miRNA Products:		miRTarBase miRNAs that target ZNF212: hsa-mir-125b-5p (MIRT045981), hsa-mir-744-5p (MIRT037645)

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		Selected qRT-PCR Assays for microRNAs that regulate ZNF212 (see all 13):
		hsa-miR-4324 hsa-miR-3184 hsa-miR-185* hsa-miR-449c* hsa-miR-1258 hsa-miR-944 hsa-miR-3914 hsa-miR-7

		SwitchGear 3'UTR luciferase reporter plasmid: ZNF212 3' UTR sequence

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In Situ Assay
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

ZN212_HUMAN, Q9UDV6: Nucleus (Potential)

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
nucleus	5
cytosol	2

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Gene Ontology (GO): 2 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	--	--
GO:0005634	nucleus	IEA	--

Find genes that share ontologies with ZNF212 About GenesLikeMe

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for ZNF212 About

See pathways by source

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SuperPath

Contained pathways About

Gene Expression

Generic Transcription Pathway

0.40

Gene Expression

0.40

Find genes that share SuperPaths with ZNF212 About GenesLikeMe

Pathways by source See SuperPaths
Show all pathways

1 Reactome Pathway for ZNF212

Generic Transcription Pathway

Custom Pathway & Disease-focused RT² Profiler PCR Arrays for ZNF212
Interactions:

Search GeneGlobe Interaction Network for ZNF212

STRING Interaction Network Preview (showing 5 interactants - click image to see 19)

Selected Interacting proteins for ZNF212 (Q9UDV6^{1, 3} ENSP00000338572⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 27)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
GNL1	P36915³, ENSP00000365806⁴	I2D: score=1 STRING: ENSP00000365806
ENSG00000206492	P36915³	I2D: score=1
ENSG00000226882	P36915³	I2D: score=1
ENSG00000228581	P36915³	I2D: score=1
ENSG00000229470	P36915³	I2D: score=1

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Gene Ontology (GO): 2 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006351	transcription, DNA-templated	IEA	--
GO:0006355	regulation of transcription, DNA-templated	NAS	7633419

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

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Browse Tocris compounds for ZNF212 (ZN212)

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for ZNF212 gene:

NM_012256.3

Unigene Cluster for ZNF212:

Zinc finger protein 212

Hs.490510 [show with all ESTs]

Unigene Representative Sequence: NM_012256

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000335870(uc003wfp.3) ENST00000486371 ENST00000462724 ENST00000481584

ENST00000488917

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Additional mRNA sequence:

AK074821.1 AK315086.1 BC022785.2 U38864.1

14 DOTS entries:

DT.446324 DT.91950902 DT.121050997 DT.102834071 DT.91683890 DT.95096988 DT.95268179 DT.100804303

DT.121050913 DT.95268177 DT.97845530 DT.40240589 DT.95134411 DT.99935364

3 AceView cDNA sequences:

BV186394 CB988192 CF593491

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF212 (see all 9) About this scheme

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5a	·	5b	·	5c	^	6a	·	6b	^	7a	·	7b	^	8a	·	8b	^	9a	·	9b	^	10a	·	10b	·	10c
SP1:																									-				-
SP2:																									-		-		-
SP3:																													-
SP4:			-		-				-
SP5:			-				-		-

ECgene alternative splicing isoforms for ZNF212

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZNF212 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TCTTCCCACG

About this image

ZNF212 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

ZNF212 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.490510

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for ZNF212 gene from Selected species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zfp212^{1 , 5}	Zinc finger protein 212^{1, 5}	82.21(n)¹ 80.04(a)¹		6 (22.94 cM)⁵ 232784¹ NM_145576.2¹ NP_663551.2¹ 47920476⁵
chicken (Gallus gallus)	Aves	--	Uncharacterized protein	24(a)	many ↔ many	2(482598-491135)
lizard (Anolis carolinensis)	Reptilia	ZNF212⁶	zinc finger protein 212	29(a)	1 ↔ 1	AAWZ02037767(3896-11046)

ENSEMBL Gene Tree for ZNF212 (if available)
TreeFam Gene Tree for ZNF212 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for ZNF212 gene

ZNF282² ZNF777² ZNF746² ZNF398² ZNF783²

Selected SIMAP similar genes for ZNF212 using alignment to 4 protein entries: ZN212_HUMAN (see all proteins) (see all similar genes):

ZNF767 EML2 CLUL1 DCTN5 FAM175A NF2

AURA2 BTBD2 CHID1 FAM3A RNF217 RUFY1

TMEM14B ZNF564 ZNF585B ZNF74 LYRM4 TNFRSF17

Find genes that share paralogs with ZNF212 About GenesLikeMe

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 7 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs183459455^1,2	C	--	148934745(+)	`GTATAA/CATGTG`	1	--	us2k¹		0	--	--	--	--
rs12534309^1,2	C,F,H	--	148934783(+)	`CAGAAG/ACTACC`	1	--	us2k¹ tfbs³		5		NS EA NA	536
rs187803947^1,2	C	--	148934788(+)	`GCTACC/GTGGCA`	1	--	us2k¹		0	--	--	--	--
rs148769583^1,2		--	148934881(+)	`TCAGCA/CTCCTA`	1	--	us2k¹		0	--	--	--	--
rs192968520^1,2		--	148934884(+)	`GCATCC/TTATGT`	1	--	us2k¹		0	--	--	--	--
rs12540255^1,2	H	--	148935039(+)	`aacctC/Tttgag`	1	--	us2k¹		0	--	--	--	--
rs142418081^1,2		--	148935065(+)	`GTGTGA/CACCAC`	1	--	us2k¹		0	--	--	--	--
rs138078229^1,2	C	--	148935083(+)	`GGCTC-/ATTTTA ATTTT`	1	--	us2k¹		0	--	--	--	--
rs185245215^1,2		--	148935104(+)	`TAATTC/TTGTAG`	1	--	us2k¹		0	--	--	--	--
rs151321811^1,2	C	--	148935116(+)	`GACAGG/TGTCTG`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for ZNF212 (148936742 - 148952700 bp)

Structural Variations
Database of Genomic Variants (DGV) 3 variations for ZNF212: About this table

Variant ID	Type	Subtype	PubMed ID
nsv465196	CNV	Loss	19166990
nsv889402	CNV	Loss	21882294
nsv819456	CNV	Gain	19587683

Site Specific Mutation Identification with PCR Assays

SeqTarget long-range PCR primers for resequencing ZNF212

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 602386 OMIM disorders: --

Find genes that share disorders with ZNF212 About GenesLikeMe

Genetic Association Database (GAD): ZNF212

Export disorders for ZNF212 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for ZNF212 gene, integrated from 10 sources (see all 11):
(articles sorted by number of sources associating them with ZNF212)

Utopia: connect your pdf to the dynamic
world of online information

Molecular cloning and mapping of a novel human KRAB domain-containing C2H2-type zinc finger to chromosome 7q36.1. (PubMed id 9169157)^{1, 2, 3} Becker K.G.... Drew P.D. (Genomics 1997)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
The DNA sequence of human chromosome 7. (PubMed id 12853948)^{1, 2} Hillier L.W.... Wilson R.K. (Nature 2003)
Rapid isolation and characterization of 118 novel C2H2-type zinc finger cDNAs expressed in human brain. (PubMed id 7633419)^{1, 2} Becker K.G....Drew P.D. (Hum. Mol. Genet. 1995)
A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)¹ Weimann M.... Stelzl U. (Nat. Methods 2013)
An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)¹ Ravasi T....Hayashizaki Y. (Cell 2010)
A protein-protein interaction network of transcription factors acting during liver cell proliferation. (PubMed id 18255255)¹ Gao J....Yu Y. (Genomics 2008)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)² Ota T.... Sugano S. (Nat. Genet. 2004)
Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)¹ Scherer S.W.... Tsui L.-C. (Science 2003)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 7988	HGNC: 13004	AceView: ZNF212.1	Ensembl:ENSG00000170260	euGenes: HUgn7988
ECgene: ZNF212	H-InvDB: ZNF212

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for ZNF212	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZNF212 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for ZNF212 gene:
Search GeneIP for patents involving ZNF212

GeneCards and IP:
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(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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ZNF212 Gene

Zinc Finger Protein 212

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ZNF212 Gene

Zinc Finger Protein 212

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