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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ZNF204P Gene

pseudogene GIFtS: 27
GCID: GC06M027326

zinc finger protein 204, pseudogene

(Previous names: zinc finger protein 204, zinc finger protein 204 (pseudogene),...)
(Previous symbols: ZNF204, ZNF315P)

Search for ZNF204P
in

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 5

Aliases
Zinc Finger Protein 204, Pseudogene¹ ²		Zinc Finger Protein 204¹
ZNF204¹ ² ⁵		Zinc Finger Protein 204 (Pseudogene)¹
ZNF184-Lp¹ ²		Zinc Finger Protein 315 (Pseudogene)¹
ZNF315P¹ ²		Zinc Finger Protein 315 Pseudogene¹
B24o18.1¹		Zinc Finger Protein 315, Pseudogene¹

External Ids:	HGNC: 12995¹	Entrez Gene: 7754²	Ensembl: ENSG00000204789⁷	OMIM: 603282⁵

ORGUL members:	fRNAdb¹⁰:FR030463
	NCBI:AF033199
	NONCODE:n407059 n405566
	RNAdb:LIT2063

Export aliases for ZNF204P gene to outside databases

Previous GC identifers: GC06M027437 GC06M027133

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ZNF204P:

This locus represents a transcribed pseudogene, possibly of ZNF79 (GeneID 7633). The protein encoded by this locus

would have significant N-terminal truncation, and would lack the KRAB domain and the C2H2 type zinc finger domain,

compared to ZNF79. (provided by RefSeq, Jun 2011)

fRNAdb sequence ontology for ZNF204P:
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.1 NT_007592.15

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for ZNF204P
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF204P

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p22.1 HGNC cytogenetic band: 6p21.3

ZNF204P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF204P gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M027326: view genomic region (about GC identifiers)

Start:	27,325,602 bp from pter	End:	27,343,153 bp from pter
Size:	17,552 bases	Orientation:	minus strand

ORGUL member locations:
Legend (see complete legend)

n405566
n407059
FR0030463

lncRNA
Full Legend

27325601 27334377 27343153 chr6

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB: --

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ZNF204P

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

Unigene Cluster for ZNF204P:

Zinc finger protein 204, pseudogene

Hs.8198 [show with all ESTs]

Unigene Representative Sequence: NR_002722

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000416749 ENST00000377448(uc011dkv.1)

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Additional cDNA sequence:

AF033199.1 AK296042.1 AL832571.1 AL833520.1 BC067282.1 NR_002722.2 NR_024553.1

9 DOTS entries:

DT.434461 DT.100747331 DT.99954492 DT.91737674 DT.100662364 DT.121344389 DT.121344394 DT.121344401

DT.91682442

24/32 AceView cDNA sequences (see all 32):

BX098442 AI650923 CK902341 CB241909 BU633043 BC067282 BQ881078 BU173489

T40438 CD511209 BI480654 BQ786889 AW896074 CB963212 CK902342 AL044664

BX390102 AL833520 M78301 BI463942 AF033199 AL521912 BQ028251 CD677819

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZNF204P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GATCTCAATC

About this image
Genevestigator expression for ZNF204P

SOURCE GeneReport for Unigene cluster: Hs.8198

SABiosciences Custom PCR Arrays for ZNF204P

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for ZNF204P (if available)
TreeFam Gene Tree for ZNF204P (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs191395929^1,2		--	27325228(+)	`ATGGCC/TTTTAC`	2	--	int¹		0	--	--	--	--
rs182918460^1,2		--	27325374(+)	`CAAGAC/TTGGGC`	2	--	int¹		0	--	--	--	--
rs72839475^1,2	C,	--	27325396(+)	`CCAGGT/CAACTT`	2	--	int¹		1		NA	120
rs146701666^1,2		--	27325480(+)	`GATCTA/CAAACC`	2	--	int¹		0	--	--	--	--
rs186882679^1,2		--	27325639(+)	`CTACTA/GCAAGC`	2	--	nc-transcript-variant		0	--	--	--	--
rs16898089^1,2	C,	--	27325649(+)	`CTCACT/CTGTGA`	2	--	nc-transcript-variantese³		3		NA	142
rs149881159^1,2		--	27325735(+)	`ATAATG/TGAGGA`	2	--	nc-transcript-variant		0	--	--	--	--
rs191773362^1,2		--	27325914(+)	`GATCAC/TTCTAA`	2	--	nc-transcript-variant		0	--	--	--	--
rs182650001^1,2		--	27325941(+)	`ACGATC/TCTCCT`	2	--	nc-transcript-variant		0	--	--	--	--
rs12212389^1,2	C,F,	--	27326397(+)	`GCTTTT/CCCACA`	2	--	nc-transcript-variantese³		1		NA	120

HapMap Linkage Disequilibrium report for ZNF204P (27325602 - 27343153 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZNF204P: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ZNF204P for disorders About MalaCards

ZNF204P for disorders About GeneDecksing

OMIM gene information: 603282 OMIM disorders: --

Export disorders for ZNF204P gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZNF204P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF204P)

Utopia: connect your pdf to the dynamic
world of online information

Cloning and molecular characterization of a cross-homologous zinc finger locus ZNF204. (PubMed id 9628832)^{1, 3} Partridge J....Walker A.P. (1998)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
(PubMed id 15608161)¹⁰

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 7754	HGNC: 12995	AceView: ZNF204	Ensembl:ENSG00000204789	euGenes: HUgn7754
ECgene: ZNF204P	H-InvDB: ZNF204P

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ZNF204P	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZNF204P gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for ZNF204P gene:
Search GeneIP for patents involving ZNF204P

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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ZNF204P Gene

zinc finger protein 204, pseudogene

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ZNF204P Gene

zinc finger protein 204, pseudogene

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