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ZNF204P Gene

pseudogene   GIFtS: 26
GCID: GC06M027326

Zinc Finger Protein 204, Pseudogene

(Previous names: zinc finger protein 204, zinc finger protein 204 (pseudogene),...)
(Previous symbols: ZNF204, ZNF315P)
  Search for ZNF204P
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 5

Aliases
Zinc Finger Protein 204, Pseudogene1 2     Zinc Finger Protein 315 (Pseudogene)1
ZNF2041 2 5     Zinc Finger Protein 315 Pseudogene1
ZNF315P1 2     Zinc Finger Protein 315, Pseudogene1
Zinc Finger Protein 2041     ZNF184-Lp2
Zinc Finger Protein 204 (Pseudogene)1     b24o18.12

External Ids:    HGNC: 129951   Entrez Gene: 77542   Ensembl: ENSG000002047897   OMIM: 6032825   
ORGUL members:    fRNAdb10:FR030463      
NCBI13:AF033199    
NONCODE14:n407059 n346137 n405566    
RNAdb15:LIT2063    

Export aliases for ZNF204P gene to outside databases

Previous GC identifers: GC06M027437 GC06M027133


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ZNF204P Gene:
This locus represents a transcribed pseudogene, possibly of ZNF79 (GeneID 7633). The protein encoded by this locus
would have significant N-terminal truncation, and would lack the KRAB domain and the C2H2 type zinc finger
domain, compared to ZNF79. (provided by RefSeq, Jun 2011)

GeneCards Summary for ZNF204P Gene:
ZNF204P (zinc finger protein 204, pseudogene) is a pseudogene, and is affiliated with the lncRNA class.



fRNAdb sequence ontology for ZNF204P:
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000006.12  NC_018917.2  NT_007592.16  
Regulatory elements:
   Search for regulatory transcription factor binding sites for ZNF204P
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF204P


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3   Ensembl cytogenetic band:  6p22.1   HGNC cytogenetic band: 6p21.3

ZNF204P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF204P gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M027326:  view genomic region     (about GC identifiers)

Start:
27,325,602 bp from pter      End:
27,343,153 bp from pter
Size:
17,552 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for ZNF204P

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for ZNF204P

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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Unigene Cluster for ZNF204P:

Zinc finger protein 204, pseudogene
Hs.8198  [show with all ESTs]
Unigene Representative Sequence: NR_002722
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000416749 ENST00000377448(uc011dkv.1)
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Additional mRNA sequence: 

AF033199.1 AK296042.1 AL832571.1 AL833520.1 BC067282.1 NR_002722.2 NR_024553.1 

9 DOTS entries:

DT.434461  DT.100747331  DT.99954492  DT.91737674  DT.100662364  DT.121344389  DT.121344394  DT.121344401 
DT.91682442 

Selected AceView cDNA sequences (see all 32):

BX098442 AI650923 CK902341 BU633043 CB241909 BQ786889 AL833520 BU173489 
BC067282 T40438 AW896074 BI480654 CD511209 CB963212 BQ881078 BX390102 
CK902342 AL044664 AI453500 CD677819 BQ028251 AL521912 AF033199 AW338359 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZNF204P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GATCTCAATC
ZNF204P Expression
About this image


ZNF204P expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 2 entries
         Human embryonic stem cells (family)
 
 Blood (Hematopoietic System)    fully expand to see all 2 entries
         T-Cytotoxic Cells Peripheral Blood
ZNF204P Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.8198
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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ENSEMBL Gene Tree for ZNF204P (if available)
TreeFam Gene Tree for ZNF204P (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ZNF204P (see all 305)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1913959291,2
--27325228(+) ATGGCC/TTTTAC 2 -- int10--------
rs1829184601,2
--27325374(+) CAAGAC/TTGGGC 2 -- int10--------
rs728394751,2
C,F--27325396(+) CCAGGT/CAACTT 2 -- int11Minor allele frequency- C:0.01NA 120
rs1467016661,2
--27325480(+) GATCTA/CAAACC 2 -- int10--------
rs1868826791,2
--27325639(+) CTACTA/GCAAGC 2 -- nc-transcript-variant0--------
rs168980891,2
C,F--27325649(+) CTCACT/CTGTGA 2 -- nc-transcript-variantese33Minor allele frequency- C:0.01NA 142
rs1498811591,2
--27325735(+) ATAATG/TGAGGA 2 -- nc-transcript-variant0--------
rs1917733621,2
--27325914(+) GATCAC/TTCTAA 2 -- nc-transcript-variant0--------
rs1826500011,2
--27325941(+) ACGATC/TCTCCT 2 -- nc-transcript-variant0--------
rs122123891,2
C,F--27326397(+) GCTTTT/CCCACA 2 -- nc-transcript-variantese31Minor allele frequency- C:0.08NA 120

HapMap Linkage Disequilibrium report for ZNF204P (27325602 - 27343153 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for ZNF204P: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing ZNF204P
DNA2.0 Custom Variant and Variant Library Synthesis for ZNF204P

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 603282    OMIM disorders: --


ZNF204P for disorders           About GeneDecksing

Genetic Association Database (GAD): ZNF204P

Export disorders for ZNF204P gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ZNF204P gene integrated from 10 sources:
(articles sorted by number of sources associating them with ZNF204P)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Cloning and molecular characterization of a cross-homologous zinc finger locus ZNF204. (PubMed id 9628832)1, 3 Partridge J....Walker A.P. (Genomics 1998)
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  4. (PubMed id 15608161)10 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 7754 HGNC: 12995 AceView: ZNF204 Ensembl:ENSG00000204789 euGenes: HUgn7754
ECgene: ZNF204P H-InvDB: ZNF204P

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ZNF204P Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ZNF204P gene:
Search GeneIP for patents involving ZNF204P

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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