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Aliases for ZNF200 Gene

Aliases for ZNF200 Gene

  • Zinc Finger Protein 200 2 3 5
  • ZNFMF 4

External Ids for ZNF200 Gene

Previous GeneCards Identifiers for ZNF200 Gene

  • GC16M003292
  • GC16M003272
  • GC16M003212

Summaries for ZNF200 Gene

GeneCards Summary for ZNF200 Gene

ZNF200 (Zinc Finger Protein 200) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF597.

UniProtKB/Swiss-Prot for ZNF200 Gene

  • Could have a role in spermatogenesis.

Additional gene information for ZNF200 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF200 Gene

Genomics for ZNF200 Gene

Regulatory Elements for ZNF200 Gene

Enhancers for ZNF200 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H003400 1.1 ENCODE 23.4 -165.1 -165075 2 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 ZNF597 CREBBP ZNF200 SRRM2 ZNF263 LOC105371055 ENSG00000261938 AMDHD2 ERVK13-1 NAA60
GH16H002602 2.4 ENCODE dbSUPER 10.7 +632.6 632605 1 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A PPARGC1A SSRP1 TBL3 ZNF597 AMDHD2 ENSG00000226890 SRRM2 ENSG00000200059 TIGD7 ZNF263 ENSG00000261240 ZNF598
GH16H002266 1.2 ENCODE 21.2 +968.0 968010 3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF263 UBE2I UNKL ENSG00000261505 TSC2 E4F1 ENSG00000260051 TBL3 CRAMP1 AMDHD2
GH16H002903 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +330.6 330614 3 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF548 CREBBP ZNF597 ZNF263 ZNF174 ENSG00000261938 TBL3 ZNF75A TSC2 FLYWCH2 E4F1
GH16H003442 1 ENCODE 23.4 -207.6 -207552 2 ATF1 ZFP64 SIN3A YY1 ETS1 ELK1 FOS RUNX3 SP3 CEBPZ ZNF597 ZNF200 CREBBP AMDHD2 ENSG00000261938 MEFV TIGD7 ZNF75A MTND1P8 ZNF263
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF200 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF200 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082628 1121 1401 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 CBX5

Genomic Location for ZNF200 Gene

Chromosome:
16
Start:
3,222,325 bp from pter
End:
3,236,221 bp from pter
Size:
13,897 bases
Orientation:
Minus strand

Genomic View for ZNF200 Gene

Genes around ZNF200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF200 Gene

Proteins for ZNF200 Gene

  • Protein details for ZNF200 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P98182-ZN200_HUMAN
    Recommended name:
    Zinc finger protein 200
    Protein Accession:
    P98182
    Secondary Accessions:
    • D3DUB7
    • D3DUB8
    • O15361
    • Q5XKM5
    • Q7Z5V1

    Protein attributes for ZNF200 Gene

    Size:
    395 amino acids
    Molecular mass:
    45534 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC70008.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH54005.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF200 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF200 Gene

Post-translational modifications for ZNF200 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF200 Gene

Domains & Families for ZNF200 Gene

Gene Families for ZNF200 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF200 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF200: view

No data available for UniProtKB/Swiss-Prot for ZNF200 Gene

Function for ZNF200 Gene

Molecular function for ZNF200 Gene

GENATLAS Biochemistry:
zinc finger protein 200,C2H2 type,predominantly expressed in testis
UniProtKB/Swiss-Prot Function:
Could have a role in spermatogenesis.

Phenotypes From GWAS Catalog for ZNF200 Gene

Gene Ontology (GO) - Molecular Function for ZNF200 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF200: view
genes like me logo Genes that share phenotypes with ZNF200: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ZNF200
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF200 Gene

Localization for ZNF200 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF200 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF200 gene
Compartment Confidence
nucleus 5
mitochondrion 3
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ZNF200 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with ZNF200: view

Pathways & Interactions for ZNF200 Gene

SuperPathways for ZNF200 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF200: view

Pathways by source for ZNF200 Gene

2 Reactome pathways for ZNF200 Gene

Gene Ontology (GO) - Biological Process for ZNF200 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZNF200: view

No data available for SIGNOR curated interactions for ZNF200 Gene

Drugs & Compounds for ZNF200 Gene

No Compound Related Data Available

Transcripts for ZNF200 Gene

Unigene Clusters for ZNF200 Gene

Zinc finger protein 200:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ZNF200
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF200 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d
SP1: - - -
SP2: - - -
SP3: -
SP4: -
SP5: - -
SP6: - - - -
SP7:

Relevant External Links for ZNF200 Gene

GeneLoc Exon Structure for
ZNF200
ECgene alternative splicing isoforms for
ZNF200

Expression for ZNF200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF200 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF200 Gene

This gene is overexpressed in Testis (x5.1) and Whole Blood (x4.3).

Protein differential expression in normal tissues from HIPED for ZNF200 Gene

This gene is overexpressed in Esophagus (47.8) and Saliva (21.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF200 Gene



Protein tissue co-expression partners for ZNF200 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF200 Gene:

ZNF200

SOURCE GeneReport for Unigene cluster for ZNF200 Gene:

Hs.632222

mRNA Expression by UniProt/SwissProt for ZNF200 Gene:

P98182-ZN200_HUMAN
Tissue specificity: Highly expressed in testis, weakly expressed in spleen, thymus, prostate, ovary, small intestine colon and peripheral blood leukocytes.

Evidence on tissue expression from TISSUES for ZNF200 Gene

  • Liver(4.1)
  • Skin(4.1)
  • Eye(4)
genes like me logo Genes that share expression patterns with ZNF200: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF200 Gene

Orthologs for ZNF200 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF200 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF200 33 34
  • 99.41 (n)
cow
(Bos Taurus)
Mammalia ZNF200 33 34
  • 88.01 (n)
dog
(Canis familiaris)
Mammalia ZNF200 33 34
  • 87.44 (n)
oppossum
(Monodelphis domestica)
Mammalia ZNF200 34
  • 57 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CR352258.1 34
  • 35 (a)
OneToMany
Species where no ortholog for ZNF200 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF200 Gene

ENSEMBL:
Gene Tree for ZNF200 (if available)
TreeFam:
Gene Tree for ZNF200 (if available)

Paralogs for ZNF200 Gene

Paralogs for ZNF200 Gene

genes like me logo Genes that share paralogs with ZNF200: view

Variants for ZNF200 Gene

Sequence variations from dbSNP and Humsavar for ZNF200 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000144535 -- 3,229,527(+) AAGCA(A/C)CAGCC intron-variant
rs1000326461 -- 3,225,056(+) CACAC(C/T)ATTAT intron-variant
rs1000502312 -- 3,234,448(+) ATCAG(A/G)GAAGA intron-variant
rs1001046331 -- 3,226,130(+) TCACT(A/G)CAAGC intron-variant
rs1001072170 -- 3,236,807(+) AATTG(C/G)TCATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF200 Gene

Variant ID Type Subtype PubMed ID
nsv1036149 CNV gain 25217958
nsv1044147 CNV loss 25217958
nsv1070737 CNV deletion 25765185
nsv457355 CNV gain 19166990
nsv471074 CNV gain 18288195
nsv509592 CNV insertion 20534489
nsv516280 CNV gain 19592680
nsv571249 CNV gain 21841781
nsv833127 CNV gain+loss 17160897

Variation tolerance for ZNF200 Gene

Residual Variation Intolerance Score: 71.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.52; 64.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF200 Gene

Disorders for ZNF200 Gene

Relevant External Links for ZNF200

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF200

No disorders were found for ZNF200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF200 Gene

Publications for ZNF200 Gene

  1. Identification of two Krüppel-related zinc finger genes (ZNF200 and ZNF210) from human chromosome 16p13.3. (PMID: 9787081) Deng Z … Kastner DL (Genomics 1998) 2 3 4 60
  2. A candidate gene for familial Mediterranean fever. (PMID: 9288094) French FMF Consortium (Nature genetics 1997) 2 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J … Yang X (Molecular systems biology 2011) 3 60

Products for ZNF200 Gene

Sources for ZNF200 Gene

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