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Aliases for ZNF197 Gene

Aliases for ZNF197 Gene

  • Zinc Finger Protein 197 2 3 5
  • Zinc Finger Protein With KRAB And SCAN Domains 9 3 4
  • PVHL-Associated KRAB Domain-Containing Protein 3 4
  • Zinc Finger Protein 166 2 3
  • ZKSCAN9 3 4
  • ZNF166 3 4
  • ZNF20 3 4
  • VHL-Associated KRAB-A Domain-Containing Protein 3
  • Zinc Finger Protein 20 3
  • D3S1363E 3
  • ZSCAN41 3
  • VHLaK 3
  • P18 3

External Ids for ZNF197 Gene

Previous HGNC Symbols for ZNF197 Gene

  • ZNF166

Previous GeneCards Identifiers for ZNF197 Gene

  • GC03P044135
  • GC03P043850
  • GC03P044416
  • GC03P044631
  • GC03P044558
  • GC03P044645
  • GC03P044674
  • GC03P044688
  • GC03P044716
  • GC03P044783
  • GC03P044676
  • GC03P044800
  • GC03P044827
  • GC03P044871
  • GC03P044935

Summaries for ZNF197 Gene

Entrez Gene Summary for ZNF197 Gene

  • This gene product belongs to the zinc finger protein superfamily, members of which are regulatory proteins characterized by nucleic acid-binding zinc finger domains. The encoded protein contains 20 tandemly arrayed C2H2-type zinc fingers, a Kruppel-associated box (KRAB) domain, and a SCAN box. This transcript turns over rapidly and contains 3' UTR AUUUA motifs, which are often a hallmark of rapid turnover. It is overexpressed in some thyroid papillary carcinomas. This gene is located in a cluster of zinc finger genes at 3p21. [provided by RefSeq, Apr 2016]

GeneCards Summary for ZNF197 Gene

ZNF197 (Zinc Finger Protein 197) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF208.

UniProtKB/Swiss-Prot for ZNF197 Gene

  • May be involved in transcriptional regulation.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF197 Gene

Genomics for ZNF197 Gene

Regulatory Elements for ZNF197 Gene

Enhancers for ZNF197 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G044624 1.1 ENCODE 34.8 +40.4 40446 2.1 PKNOX1 CREB3L1 ARNT ARID4B SIN3A YY1 ZNF766 CBX5 ZNF143 KLF13 ZNF197 KIAA1143 ZNF660 ZNF35 ZNF445 ZNF197-AS1
GH03G044532 1 ENCODE 24.8 -51.9 -51885 0.2 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF766 ZNF197 ZNF852 ZKSCAN7 ENSG00000235845 TGM4 ZNF445 ZNF660 ZNF501 CLEC3B RNU5B-3P
GH03G044438 1.6 Ensembl ENCODE dbSUPER 14.2 -144.7 -144701 3.5 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF660 ZNF197 LINC00694 GC03M044441
GH03G044468 1.3 Ensembl ENCODE 16.5 -115.8 -115811 1.0 HDGF ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 ZNF207 FOS ZNF660 ZNF197 ZNF445 GC03M044441
GH03G044509 1 ENCODE 18.8 -74.2 -74189 2.6 HDGF ATF1 ARNT WRNIP1 ARID4B SIN3A ZNF2 ZNF48 YY1 TCF12 ZNF660 ZNF197 ZNF852 EI24P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF197 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF197 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000151591 182 2000 PKNOX1 CREB3L1 ARNT ARID4B SIN3A YY1 ZNF766 CBX5 ZNF143 KLF13

Transcription factor binding sites by QIAGEN in the ZNF197 gene promoter:

Genomic Location for ZNF197 Gene

Chromosome:
3
Start:
44,584,888 bp from pter
End:
44,648,471 bp from pter
Size:
63,584 bases
Orientation:
Plus strand

Genomic View for ZNF197 Gene

Genes around ZNF197 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF197 Gene

Proteins for ZNF197 Gene

  • Protein details for ZNF197 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14709-ZN197_HUMAN
    Recommended name:
    Zinc finger protein 197
    Protein Accession:
    O14709
    Secondary Accessions:
    • B2RAH8
    • Q86VG0

    Protein attributes for ZNF197 Gene

    Size:
    1029 amino acids
    Molecular mass:
    118847 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF197 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF197 Gene

Post-translational modifications for ZNF197 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF197 Gene

Domains & Families for ZNF197 Gene

Gene Families for ZNF197 Gene

Suggested Antigen Peptide Sequences for ZNF197 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O14709

UniProtKB/Swiss-Prot:

ZN197_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF197: view

Function for ZNF197 Gene

Molecular function for ZNF197 Gene

GENATLAS Biochemistry:
zinc finger protein 197
UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF197 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA,IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF197: view
genes like me logo Genes that share phenotypes with ZNF197: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF197 Gene

Localization for ZNF197 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF197 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF197 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for ZNF197 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF197: view

Pathways & Interactions for ZNF197 Gene

SuperPathways for ZNF197 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF197: view

Pathways by source for ZNF197 Gene

2 Reactome pathways for ZNF197 Gene

Gene Ontology (GO) - Biological Process for ZNF197 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF197: view

No data available for SIGNOR curated interactions for ZNF197 Gene

Drugs & Compounds for ZNF197 Gene

No Compound Related Data Available

Transcripts for ZNF197 Gene

Unigene Clusters for ZNF197 Gene

Zinc finger protein 197:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF197 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1:
SP2: -

Relevant External Links for ZNF197 Gene

GeneLoc Exon Structure for
ZNF197
ECgene alternative splicing isoforms for
ZNF197

Expression for ZNF197 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF197 Gene

Protein differential expression in normal tissues from HIPED for ZNF197 Gene

This gene is overexpressed in Breast (39.9) and Cerebrospinal fluid (29.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF197 Gene



Protein tissue co-expression partners for ZNF197 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF197 Gene:

ZNF197

SOURCE GeneReport for Unigene cluster for ZNF197 Gene:

Hs.157035
genes like me logo Genes that share expression patterns with ZNF197: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF197 Gene

Orthologs for ZNF197 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZNF197 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZNF197 34 35
  • 91.05 (n)
mouse
(Mus musculus)
Mammalia Zfp616 35
  • 32 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.4900 34
fruit fly
(Drosophila melanogaster)
Insecta CG6654 36
  • 39 (a)
CG10959 36
  • 37 (a)
CG6689 36
  • 33 (a)
zf30C 36
  • 33 (a)
CG11902 36
  • 24 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 42 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
-- 35
  • 32 (a)
ManyToMany
CSA.1668 35
  • 32 (a)
ManyToMany
Species where no ortholog for ZNF197 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF197 Gene

ENSEMBL:
Gene Tree for ZNF197 (if available)
TreeFam:
Gene Tree for ZNF197 (if available)

Paralogs for ZNF197 Gene

(306) SIMAP similar genes for ZNF197 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ZNF197: view

Variants for ZNF197 Gene

Sequence variations from dbSNP and Humsavar for ZNF197 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000221208 -- 44,639,006(+) ACTGT(A/G)CCTGG intron-variant
rs1000233234 -- 44,639,392(+) GTATT(A/C)TTTTA intron-variant
rs1000343534 -- 44,631,946(+) GCCAC(A/C)CACCT intron-variant
rs1000597474 -- 44,625,127(+) GGAGC(C/T)GCAGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000826160 -- 44,631,808(+) CCATT(C/T)TCCTG intron-variant

Variation tolerance for ZNF197 Gene

Residual Variation Intolerance Score: 15% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.71; 32.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF197 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF197

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF197 Gene

Disorders for ZNF197 Gene

Relevant External Links for ZNF197

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF197

No disorders were found for ZNF197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF197 Gene

Publications for ZNF197 Gene

  1. Identification of rapid turnover transcripts overexpressed in thyroid tumors and thyroid cancer cell lines: use of a targeted differential RNA display method to select for mRNA subsets. (PMID: 9380504) Gonsky R. … Fagin J.A. (Nucleic Acids Res. 1997) 2 3 4 22 64
  2. The VHL protein recruits a novel KRAB-A domain protein to repress HIF-1alpha transcriptional activity. (PMID: 12682018) Li Z. … Wu G. (EMBO J. 2003) 3 4 22 64
  3. YAC-assisted cloning of transcribed sequences from the human chromosome 3p21 region. (PMID: 8353497) Pengue G. … D'Urso M. (Hum. Mol. Genet. 1993) 2 3 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for ZNF197 Gene

Sources for ZNF197 Gene

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