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ZNF169 Gene

protein-coding   GIFtS: 52
GCID: GC09P097021

Zinc Finger Protein 169

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 1691 2
EC 2.1.1.438

External Ids:    HGNC: 129571   Entrez Gene: 1698412   Ensembl: ENSG000001757877   OMIM: 6034045   UniProtKB: Q149293   

Export aliases for ZNF169 gene to outside databases

Previous GC identifers: GC09U990077 GC09M088768 GC09P090320 GC09P092363 GC09P092382 GC09P094101 GC09P096061 GC09P066701


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF169 Gene:
ZNF169 (zinc finger protein 169) is a protein-coding gene. Diseases associated with ZNF169 include multiple self healing squamous epithelioma, and hereditary sensory neuropathy. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF432.

UniProtKB/Swiss-Prot: ZN169_HUMAN, Q14929
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000009.12  NC_018920.2  NT_008470.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF169 gene promoter:
         Elk-1   MAZR   RREB-1   LUN-1   Cdc5   HNF-3beta   NF-kappaB   MZF-1   CP2   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF169 promoter sequence
   Search Chromatin IP Primers for ZNF169

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF169


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q22.32   Ensembl cytogenetic band:  9q22.32   HGNC cytogenetic band: 9q22.32

ZNF169 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF169 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P097021:  view genomic region     (about GC identifiers)

Start:
97,021,578 bp from pter      End:
97,065,291 bp from pter
Size:
43,714 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ZN169_HUMAN, Q14929 (See protein sequence)
Recommended Name: Zinc finger protein 169  
Size: 603 amino acids; 68488 Da
Sequence caution: Sequence=AAH47702.1; Type=Erroneous initiation; Sequence=BAF82431.1; Type=Erroneous initiation;
Secondary accessions: A2AGP5 A8K127 Q6PI28

Explore the universe of human proteins at neXtProt for ZNF169: NX_Q14929

Explore proteomics data for ZNF169 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus
  • 2 DME Specific Peptides for ZNF169 (Q14929)
     CRECGRGF  HQRTHTGEKPY 


    See ZNF169 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_919301.2  
    ENSEMBL proteins: 
     ENSP00000378792   ENSP00000340711   ENSP00000474608   ENSP00000475038   ENSP00000364503  
    Reactome Protein details: Q14929

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q14929

    ProtoNet protein and cluster: Q14929

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN169_HUMAN, Q14929
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 13 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    ZNF169 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN169_HUMAN, Q14929
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF169:
    zinc finger protein 169 (C2H2,Kruppel-like)

         Enzyme Number (IUBMB): EC 2.1.1.432

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity ----
    GO:0046872metal ion binding IEA--
         
    ZNF169 for ontologies           About GeneDecksing


    Animal Models:
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    hsa-miR-513a-5p
    SwitchGear 3'UTR luciferase reporter plasmidZNF169 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN169_HUMAN, Q14929: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    ZNF169 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF169 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF169
        Generic Transcription Pathway



    ZNF169 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF169
    Interactions:

        Search GeneGlobe Interaction Network for ZNF169

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    ZNF169 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF169 (ZN169)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZNF169 gene: 
    NM_194320.2  

    Unigene Cluster for ZNF169:

    Zinc finger protein 169
    Hs.387623  [show with all ESTs]
    Unigene Representative Sequence: AK122832
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000395395(uc004aum.1) ENST00000492115 ENST00000340911(uc022bki.1)
    ENST00000481550(uc004aun.3) ENST00000480716(uc004auo.3) ENST00000375354

    miRNA
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    1 qRT-PCR Assays for microRNA that regulate ZNF169:
    hsa-miR-513a-5p
    SwitchGear 3'UTR luciferase reporter plasmidZNF169 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AK093956.1 AK122832.1 AK289742.1 BC011947.2 BC019228.3 BC035060.2 BC047702.2 

    9 DOTS entries:

    DT.101982918  DT.308788  DT.101966447  DT.95084953  DT.208216  DT.91935611  DT.75140696  DT.92003625 
    DT.95162694 

    Selected AceView cDNA sequences (see all 39):

    BX279717 CR608109 BP873364 AK122832 AA398957 BX338539 AI379532 AA399540 
    BC011947 AA255753 NM_194320 AA770358 R48755 AI095009 BC035060 BC047702 
    T88890 AK093956 T70255 BX111198 AW137410 AA805446 BC019228 N78397 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF169    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b
    SP1:              -                 -                 -               
    SP2:                                -                                 
    SP3:                                -                 -               
    SP4:                                -                                 
    SP5:                                                                  


    ECgene alternative splicing isoforms for ZNF169

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF169 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF169 Expression
    About this image

    ZNF169 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF169 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.387623

    UniProtKB/Swiss-Prot: ZN169_HUMAN, Q14929
    Tissue specificity: Highly expressed in kidney, weakly expressed in heart, liver, spleen, and small intestine. Not
    expressed in adult brain or spinal cord

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for ZNF169 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp1691 , 5 zinc finger protein 1691, 5 72.26(n)1
    63.56(a)1
      13 (24.81 cM)5
    679111  NM_001164575.11  NP_001158047.11 
     484876475 


    ENSEMBL Gene Tree for ZNF169 (if available)
    TreeFam Gene Tree for ZNF169 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF169 gene
    ZNF4322  ZNF5892  PRDM92  ZNF1332  ENSG000002565662  ZNF3432  HKR12  
    Selected SIMAP similar genes for ZNF169 using alignment to 7 protein entries:     ZN169_HUMAN (see all proteins) (see all similar genes):
    FAM175A    C16orf89    COL24A1    ZNF324B    EML2    TMEM44
    ZNF229    ZNF225    FLJ00301    ZNF420    ZNF577    ZNF419
    ZNF300P1    ZNF669    ZNF529    ZNF155    ZNF337    ZNF350

    ZNF169 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF169 (see all 1029)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1840513861,2
    --97019678(+) TATGAC/TTTGGA 1 -- us2k10--------
    rs1885882901,2
    --97019756(+) TGTCAA/GATGTC 1 -- us2k10--------
    rs788508421,2
    C--97019782(+) TATTTT/CGTCCT 1 -- us2k12Minor allele frequency- C:0.09NA 122
    rs1809964801,2
    --97019832(+) TGTTAC/TTTCAT 1 -- us2k10--------
    rs101142091,2
    C,F,H--97019920(+) TTGCAA/GAGACT 1 -- us2k18Minor allele frequency- G:0.22NS EA WA CSA 534
    rs563408131,2
    C--97020082(+) AATCTC/TCTTCT 1 -- us2k10--------
    rs800598091,2
    F--97020144(+) CATACA/GCACTG 1 -- us2k11Minor allele frequency- G:0.02NA 120
    rs1160016091,2
    F--97020277(+) ACCAAA/GAATCA 1 -- us2k11Minor allele frequency- G:0.06WA 118
    rs1852774551,2
    C--97020324(+) GACTGA/CAAGAG 1 -- us2k10--------
    rs1442081401,2
    --97020329(+) AAAGAA/GGCACT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF169 (97021578 - 97065291 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for ZNF169:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1152524CNV Insertion17803354
    nsv831655CNV Gain17160897
    nsv893592CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 603404    OMIM disorders: --

    4 diseases for ZNF169:    About MalaCards
    multiple self healing squamous epithelioma    hereditary sensory neuropathy    richter's syndrome    neuropathy


    ZNF169 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZNF169
    Human Genome Epidemiology (HuGE) Navigator: ZNF169 (1 document)

    Export disorders for ZNF169 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF169 gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with ZNF169)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of a YAC contig containing the NBCCS locus and a novel Kruppel-type zinc finger sequence on chromosome segment 9q22.3. (PubMed id 9071574)1, 2, 3 Chidambaram A.... Dean M. (Genes Chromosomes Cancer 1997)
    2. Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations. (PubMed id 22344221)1, 4 Okada Y....Tanaka T. (Nat. Genet. 2012)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Pulsed-field gel electrophoresis and FISH mapping of chromosome 9q22: placement of a novel zinc finger gene within the NBCCS and ESS1 region. (PubMed id 9186526)1, 3 Levanat S....Bale A.E. (Cytogenet. Cell Genet. 1997)
    5. A variant of the LRP4 gene affects the risk of chronic lymphocytic leukaemia transformation to Richter syndrome. (PubMed id 21121903)4 Rasi S....Rossi D. (Br. J. Haematol. 2011)
    6. Distinct class of putative &quot;non-conserved&quot; promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PubMed id 17567985)1 Tsuritani K....Suzuki Y. (Genome Res. 2007)
    7. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (Nature 2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 169841 HGNC: 12957 AceView: ZNF169 Ensembl:ENSG00000175787 euGenes: HUgn169841
    ECgene: ZNF169 H-InvDB: ZNF169

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF169 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF169 gene:
    Search GeneIP for patents involving ZNF169

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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