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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ZNF160 Gene

protein-coding GIFtS: 54
GCID: GC19M053569

Zinc Finger Protein 160

1 related disease
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Zinc Finger Protein 160¹ ²		HZF5²
Zinc Finger Protein HZF5² ³		KR18²
Zinc Finger Protein Kr18² ³		KRAB Zinc Finger Protein KR18²
HKr18² ³		Zinc Finger Protein 5²
F11²		KIAA1611³

External Ids:	HGNC: 12948¹	Entrez Gene: 90338²	Ensembl: ENSG00000170949⁷	OMIM: 600398⁵	UniProtKB: Q9HCG1³

Export aliases for ZNF160 gene to outside databases

Previous GC identifers: GC19U990141 GC19M058102 GC19M058260 GC19M049897

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ZNF160 Gene:

The protein encoded by this gene is a Kruppel-related zinc finger protein which is characterized by the presence

of an N-terminal repressor domain, the Kruppel-associated box (KRAB). The KRAB domain is a potent repressor of

transcription; thus this protein may function in transcription regulation. Three alternative transcripts encoding

the same protein have been described. (provided by RefSeq, Jul 2008)

GeneCards Summary for ZNF160 Gene:

ZNF160 (zinc finger protein 160) is a protein-coding gene. Diseases associated with ZNF160 include gastric cancer, and among its related super-pathways are Gene Expression. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZNF616.

UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1

Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF160 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000019.9 NT_011109.16 NC_018930.2

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ZNF160 gene promoter:
HTF Ik-1 ATF6
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZNF160 promoter sequence

Search SABiosciences Chromatin IP Primers for ZNF160

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF160

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.42 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.42

ZNF160 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF160 gene location

GeneLoc information about chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19M053569: view genomic region (about GC identifiers)

Start:	53,569,859 bp from pter	End:	53,606,689 bp from pter
Size:	36,831 bases	Orientation:	minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1 (See protein sequence)

Recommended Name: Zinc finger protein 160

Size: 818 amino acids; 94112 Da

Subcellular location: Nucleus (Probable)

Sequence caution: Sequence=CAA55528.1; Type=Miscellaneous discrepancy; Note=Dubious alternative splicing;

Secondary accessions: Q14589 Q504Q8 Q96JC5 Q9H7N6

Explore the universe of human proteins at neXtProt for ZNF160: NX_Q9HCG1

Explore proteomics data for ZNF160 at MOPED

Post-translational modifications:

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_Q9HCG1

ZNF160 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins (3 alternative transcripts):

NP_001096073.1 NP_150630.2 NP_942596.1

ENSEMBL proteins:

ENSP00000470961 ENSP00000470573 ENSP00000469393 ENSP00000470305 ENSP00000347273

ENSP00000472387 ENSP00000406201 ENSP00000409597

Reactome Protein details: Q9HCG1
Human Recombinant Protein Products for ZNF160:

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	--	--
GO:0005634	nucleus	NAS	--

ZNF160 for ontologies About GeneDecksing

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

ZNF: Zinc fingers, C2H2-type

4 InterPro protein domains:

IPR015880 Znf_C2H2-like

IPR001909 Krueppel-associated_box

IPR013087 Znf_C2H2/integrase_DNA-bd

IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q9HCG1

ProtoNet protein and cluster: Q9HCG1

2 Blocks protein domains:

IPB001909 KRAB box

IPB007086 C2H2-type zinc finger signature

UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1

Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family

Similarity: Contains 20 C2H2-type zinc fingers

Similarity: Contains 1 KRAB domain

ZNF160 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: ZN160_HUMAN, Q9HCG1

Function: May be involved in transcriptional regulation

Genatlas biochemistry entry for ZNF160:

zinc finger protein 160 (C2H2 type,Kruppel-like)

Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	--	--
GO:0003677	DNA binding	IEA	--
GO:0008270	zinc ion binding	--	--
GO:0046872	metal ion binding	IEA	--

ZNF160 for ontologies About GeneDecksing

Phenotypes:
3 GenomeRNAi human phenotypes for ZNF160:

Decreased number of cells in m

Decreased viability

Lamellipodia and high actin ra

Animal Models:

inGenious Targeting Laboratory - Custom generated mouse model solutions for ZNF160

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In Situ Assay
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for ZNF160 About

See pathways by source

SuperPath

Contained pathways About

Generic Transcription Pathway

Generic Transcription Pathway

0.47

Gene Expression

0.47

Pathways by source See SuperPaths
Show all pathways

2 Reactome Pathways for ZNF160

	Generic Transcription Pathway
	Gene Expression

ZNF160 for pathways About GeneDecksing

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ZNF160

Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006351	transcription, DNA-dependent	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	NAS	--
GO:0030097	hemopoiesis	NAS	11410164

ZNF160 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Browse Tocris compounds for ZNF160 (ZN160)

Search CenterWatch for drugs/clinical trials and news about ZNF160 / ZN160

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ZNF160 gene (3 alternative transcripts):

NM_001102603.1 NM_033288.3 NM_198893.2

Unigene Cluster for ZNF160:

Zinc finger protein 160

Hs.655967 [show with all ESTs]

Unigene Representative Sequence: NM_001102603

16 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000599056 ENST00000601421 ENST00000599247 ENST00000601982 ENST00000355147(uc002qas.4)

ENST00000599637 ENST00000599729 ENST00000597112 ENST00000602095 ENST00000596966

ENST00000594760 ENST00000600924 ENST00000599980 ENST00000596388 ENST00000429604(uc010eqk.3 uc002qaq.4)

ENST00000418871(uc002qar.4)

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Additional mRNA sequence:

AF027144.1 AF277623.1 AK024442.1 AK024789.1 BC000807.1 BC012054.1 BC094880.1 CR749613.1

X77744.1 X78928.1

14 DOTS entries:

DT.100049108 DT.70104669 DT.121462036 DT.100035462 DT.205688 DT.95267506 DT.121462325 DT.100655228

DT.91896755 DT.75187941 DT.121461946 DT.95316252 DT.99963014 DT.96085328

24/98 AceView cDNA sequences (see all 98):

BM703742 BM668494 CB998561 BQ007175 BP368213 BM741462 NM_033288 NM_198893

BC012054 CD634977 AW089035 BE734288 BM741934 BC000807 BQ028772 BQ061855

AL603285 BM722404 X77744 BX484526 BP364515 N30552 W56205 AK024789

GeneLoc Exon Structure

5/10 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF160 (see all 10) About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	^	2	^	3	^	4	^	5a	·	5b	^	6a	·	6b	^	7a	·	7b	·	7c	·	7d	·	7e	^	8a	·	8b	^	9	^	10a	·	10b	^	11
SP1:									-		-				-		-				-		-		-		-		-		-		-		-
SP2:									-		-						-				-		-		-		-		-		-		-		-
SP3:									-								-
SP4:									-		-						-				-
SP5:									-		-				-		-				-												-

ECgene alternative splicing isoforms for ZNF160

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZNF160 expression in normal human tissues (normalized intensities) ZNF160 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: CCTGTAAATC

About this image

ZNF160 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/2 selected tissues (see all 2) fully expand


Thymus (Hematopoietic System)
Double Positive Thymocytes Thymus

Blood (Cardiovascular System)
Double Positive Thymocytes Thymus

See ZNF160 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNF160

SOURCE GeneReport for Unigene cluster: Hs.655967

UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1

Tissue specificity: Ubiquitous

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for ZNF160 gene from 1/5 species (see all 5) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zfp160^{1 , 5}	zinc finger protein 160^{1, 5}	76.75(n)¹ 74.82(a)¹		17 (11.40 cM)⁵ 224585¹ NM_145483.2¹ NP_663458.2¹ 21008941⁵

ENSEMBL Gene Tree for ZNF160 (if available)
TreeFam Gene Tree for ZNF160 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for ZNF160 gene

ZNF616² ZNF473² ZNF546² ZNF99² ZNF836² ZNF717² ZNF594² ZNF600²

ZFP62² ZNF841² ZNF780B² ZNF197² ZNF585A² ZNF107² ZNF808² ZNF845²

ZNF658² ZNF624² ZNF268²

18/547 SIMAP similar genes for ZNF160 using alignment to 6 protein entries: ZN160_HUMAN (see all proteins) (see all similar genes):

DKFZp686B16128 ZNF78L1 kr-znf3 HZF30 ZFS-1 ZNF665

ZNF616 DKFZp686M04222 HZF36 ZFS-4 ZNF213 ZNF702P

ZNF826P ZNF420 ZNF721 HZF16 ZNF146 ZNF232

ZNF160 for paralogs About GeneDecksing

2 Pseudogenes.org Pseudogenes for ZNF160
PGOHUM00000262842 PGOHUM00000248805

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 19 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs143020086^1,2	C	--	53569428(+)	`CCTCCC/TAAAGT`	3	--	ds500¹		0	--	--	--	--
rs148204745^1,2		--	53569458(+)	`GCCACC/TGTGCC`	3	--	ds500¹		0	--	--	--	--
rs142751042^1,2		--	53569484(+)	`TTCTCA/GCATTC`	3	--	ds500¹		0	--	--	--	--
rs79583183^1,2	C,F	--	53569523(+)	`CAAGAT/GGCAAA`	3	--	ds500¹		3		CSA WA NA	240
rs329737^1,2	C,H	--	53569527(-)	`ATGCTA/TTGCAT`	3	--	ds500¹		20		MN NS EA NA WA CSA	877
rs112465102^1,2	C,F	--	53569712(+)	`AAATGC/TGGTTA`	3	--	ds500¹		2		CSA WA	120
rs192964521^1,2		--	53569787(+)	`CCTAGC/TGGTGT`	3	--	ds500¹		0	--	--	--	--
rs147379475^1,2		--	53569806(+)	`TGTGTC/TATGGA`	3	--	ds500¹		0	--	--	--	--
rs138445044^1,2	C	--	53569922(+)	`ATTCTA/GAATAA`	3	--	ut3¹		0	--	--	--	--
rs77938394^1,2	C	--	53569968(+)	`AGTTCT/CACTAA`	3	--	ut3¹		2		CSA WA	120

HapMap Linkage Disequilibrium report for ZNF160 (53569859 - 53606689 bp)

Structural Variations
Database of Genomic Variants (DGV) 10/17 variations for ZNF160 (see all 17): About this table

Variant ID	Type	Subtype	PubMed ID
esv2718787	CNV	Deletion	23290073
esv2488809	CNV	Deletion	19546169
nsv435700	CNV	Deletion	17901297
esv2718810	CNV	Deletion	23290073
esv8151	CNV	Loss	19470904
nsv428370	CNV	Loss	18775914
nsv912345	CNV	Loss	21882294
nsv470153	CNV	Loss	18288195
nsv912343	CNV	Loss	21882294
dgv429n27	CNV	Gain	19166990

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

OMIM gene information: 600398 OMIM disorders: --

2 diseases for ZNF160: About MalaCards

gastric cancer

ZNF160 for disorders About GeneDecksing

Export disorders for ZNF160 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZNF160 gene, integrated from 9 sources (see all 15):
(articles sorted by number of sources associating them with ZNF160)

Utopia: connect your pdf to the dynamic
world of online information

Isolation of cDNA clones for 42 different Kruppel-related zinc finger proteins expressed in the human monoblast cell line U-937. (PubMed id 7865130)^{1, 2, 3} Abrink M.... Hellman L. (1995)
Molecular cloning and preliminary functional analysis of two novel human KRAB zinc finger proteins, HKr18 and HKr19. (PubMed id 11410164)^{1, 2} Mark C.... Hellman L. (2001)
Characterization of long cDNA clones from human adult spleen. (PubMed id 11214971)^{1, 2} Hattori A.... Ohara O. (2000)
Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)^{1, 2} Nagase T.... Ohara O. (2000)
A novel C2H2 zinc-finger protein gene (ZNF160) maps to human chromosome 19q13.3-q13.4. (PubMed id 7774943)^{1, 3} Halford S....Scambler P.J. (1995)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
Toward an understanding of the protein interaction net work of the human liver. (PubMed id 21988832)¹ Wang J....Yang X. (2011)
Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)¹ Danielsen J.M....Nielsen M.L. (2011)
Epigenetic regulation of TLR4 gene expression in inte stinal epithelial cells for the maintenance of intestinal homeostasis. (PubMed id 19846881)¹ Takahashi K....Kaminogawa S. (2009)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 90338	HGNC: 12948	AceView: ZNF160	Ensembl:ENSG00000170949	euGenes: HUgn90338
ECgene: ZNF160	H-InvDB: ZNF160

(According to HUGE)
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HUGE: KIAA1611

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for ZNF160	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZNF160 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for ZNF160 gene:
Search GeneIP for patents involving ZNF160

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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ZNF160 Gene

Zinc Finger Protein 160

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ZNF160 Gene

Zinc Finger Protein 160

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