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ZNF160 Gene

protein-coding   GIFtS: 54
GCID: GC19M053569

Zinc Finger Protein 160

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 1601 2     HZF52
Zinc Finger Protein HZF52 3     KR182
Zinc Finger Protein Kr182 3     KRAB Zinc Finger Protein KR182
HKr182 3     Zinc Finger Protein 52
F112     KIAA16113

External Ids:    HGNC: 129481   Entrez Gene: 903382   Ensembl: ENSG000001709497   OMIM: 6003985   UniProtKB: Q9HCG13   

Export aliases for ZNF160 gene to outside databases

Previous GC identifers: GC19U990141 GC19M058102 GC19M058260 GC19M049897


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ZNF160 Gene:
The protein encoded by this gene is a Kruppel-related zinc finger protein which is characterized by the presence
of an N-terminal repressor domain, the Kruppel-associated box (KRAB). The KRAB domain is a potent repressor of
transcription; thus this protein may function in transcription regulation. Three alternative transcripts encoding
the same protein have been described. (provided by RefSeq, Jul 2008)

GeneCards Summary for ZNF160 Gene:
ZNF160 (zinc finger protein 160) is a protein-coding gene. An important paralog of this gene is ZNF616.

UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF160 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF160 gene promoter:
         HTF   Ik-1   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF160 promoter sequence
   Search Chromatin IP Primers for ZNF160

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF160


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.42   Ensembl cytogenetic band:  19q13.42   HGNC cytogenetic band: 19q13.42

ZNF160 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF160 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M053569:  view genomic region     (about GC identifiers)

Start:
53,569,859 bp from pter      End:
53,606,689 bp from pter
Size:
36,831 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1 (See protein sequence)
Recommended Name: Zinc finger protein 160  
Size: 818 amino acids; 94112 Da
Sequence caution: Sequence=CAA55528.1; Type=Miscellaneous discrepancy; Note=Dubious alternative splicing;
Secondary accessions: Q14589 Q504Q8 Q96JC5 Q9H7N6

Explore the universe of human proteins at neXtProt for ZNF160: NX_Q9HCG1

Explore proteomics data for ZNF160 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF160 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001096073.1  NP_150630.2  NP_942596.1  

    ENSEMBL proteins: 
     ENSP00000470961   ENSP00000470573   ENSP00000469393   ENSP00000470305   ENSP00000347273  
     ENSP00000472387   ENSP00000406201   ENSP00000409597  
    Reactome Protein details: Q9HCG1

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9HCG1

    ProtoNet protein and cluster: Q9HCG1

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 20 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZNF160           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN160_HUMAN, Q9HCG1
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF160:
    zinc finger protein 160 (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF160           About GenesLikeMe


    Phenotypes:
         3 GenomeRNAi human phenotypes for ZNF160:
     Decreased number of cells in m  Decreased viability  Lamellipodia and high actin ra 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF160

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    hsa-mir-122-5p (MIRT023315)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN160_HUMAN, Q9HCG1: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF160           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF160 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZNF160           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways

    3 Downloadable PowerPoint Slides of GeneGlobe Pathway Central Maps for ZNF160
        MSP-RON Signaling
    Blood Coagulation Cascade
    Intrinsic Prothrombin Activation Pathway

    1 Reactome Pathway for ZNF160
        Generic Transcription Pathway


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    Interactions:

        Search GeneGlobe Interaction Network for ZNF160

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--
    GO:0030097hemopoiesis NAS11410164

    Find genes that share ontologies with ZNF160           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF160 (ZN160)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF160 gene (3 alternative transcripts): 
    NM_001102603.1  NM_033288.3  NM_198893.2  

    Unigene Cluster for ZNF160:

    Zinc finger protein 160
    Hs.655967  [show with all ESTs]
    Unigene Representative Sequence: NM_001102603
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000599056 ENST00000601421 ENST00000599247 ENST00000601982 ENST00000355147(uc002qas.4)
    ENST00000599637 ENST00000599729 ENST00000597112 ENST00000602095 ENST00000596966
    ENST00000594760 ENST00000600924 ENST00000599980 ENST00000596388 ENST00000429604(uc010eqk.3 uc002qaq.4)
    ENST00000418871(uc002qar.4)
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      QuantiFast Probe-based Assays in human, mouse, rat ZNF160

    Additional mRNA sequence: 

    AF027144.1 AF277623.1 AK024442.1 AK024789.1 BC000807.1 BC012054.1 BC094880.1 CR749613.1 
    X77744.1 X78928.1 

    14 DOTS entries:

    DT.100049108  DT.70104669  DT.121462036  DT.100035462  DT.205688  DT.95267506  DT.121462325  DT.100655228 
    DT.91896755  DT.75187941  DT.121461946  DT.95316252  DT.99963014  DT.96085328 

    Selected AceView cDNA sequences (see all 98):

    BM722404 BQ061855 BM741462 BE734288 BM668494 BM741934 BC012054 AW089035 
    BQ028772 NM_033288 AL603285 BM703742 BP368213 NM_198893 BC000807 BQ007175 
    CB998561 CD634977 BU741456 AI863203 AW069273 AK024789 BE047954 AF026091 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF160 (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11
    SP1:                          -     -           -     -           -     -     -     -     -     -     -     -                           
    SP2:                          -     -                 -           -     -     -     -     -     -     -     -                           
    SP3:                          -                       -                                                                                 
    SP4:                          -     -                 -           -                                                                     
    SP5:                          -     -           -     -           -                                   -                                 


    ECgene alternative splicing isoforms for ZNF160

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF160 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTGTAAATC
    ZNF160 Expression
    About this image


    ZNF160 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Thymus (Hematopoietic System)
             Double Positive Thymocytes Thymus
     
     Blood (Cardiovascular System)
             Double Positive Thymocytes Thymus
    ZNF160 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF160 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.655967

    UniProtKB/Swiss-Prot: ZN160_HUMAN, Q9HCG1
    Tissue specificity: Ubiquitous

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for ZNF160 gene from Selected species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp1605 zinc finger protein 160   --   17 (11.40 cM) 21008941 


    ENSEMBL Gene Tree for ZNF160 (if available)
    TreeFam Gene Tree for ZNF160 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF160 gene
    ZNF6162  ZNF4732  ZNF4932  ZNF5462  ZNF992  ZNF8362  ZNF7212  ZNF5942  
    ZFP622  ZNF8412  ZNF432  ZNF780B2  ZNF1972  ZNF1072  ZNF585A2  ZNF8082  
    ZNF3472  ZNF8452  ZNF585B2  ZNF6582  ZNF6292  ZNF6242  ZNF2682  ZNF8142  
    Selected SIMAP similar genes for ZNF160 using alignment to 6 protein entries:     ZN160_HUMAN (see all proteins) (see all similar genes):
    DKFZp686B16128    ZNF78L1    kr-znf3    ZNF616    HZF30    ZFS-1
    ZNF702P    ZNF665    DKFZp686M04222    HZF36    ZFS-4    ZNF213
    ZNF826P    ZNF146    ZNF818P    ZNF420    HZF16    ZNF232

    Find genes that share paralogs with ZNF160           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for ZNF160
    PGOHUM00000262842 PGOHUM00000248805


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF160 (see all 961)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1430200861,2
    C--53569428(+) CCTCCC/TAAAGT 3 -- ds50010--------
    rs1482047451,2
    --53569458(+) GCCACC/TGTGCC 3 -- ds50010--------
    rs1427510421,2
    --53569484(+) TTCTCA/GCATTC 3 -- ds50010--------
    rs795831831,2
    C,F--53569523(+) CAAGAT/GGCAAA 3 -- ds50013Minor allele frequency- G:0.13CSA WA NA 240
    rs3297371,2
    C,H--53569527(-) ATGCTA/TTGCAT 3 -- ds500120Minor allele frequency- T:0.00MN NS EA NA WA CSA 877
    rs1124651021,2
    C,F--53569712(+) AAATGC/TGGTTA 3 -- ds50012Minor allele frequency- T:0.02CSA WA 120
    rs1929645211,2
    --53569787(+) CCTAGC/TGGTGT 3 -- ds50010--------
    rs1473794751,2
    --53569806(+) TGTGTC/TATGGA 3 -- ds50010--------
    rs1384450441,2
    C--53569922(+) ATTCTA/GAATAA 3 -- ut310--------
    rs779383941,2
    C--53569968(+) AGTTCT/CACTAA 3 -- ut312Minor allele frequency- C:0.09CSA WA 120

    HapMap Linkage Disequilibrium report for ZNF160 (53569859 - 53606689 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for ZNF160 (see all 17):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2718787CNV Deletion23290073
    esv2488809CNV Deletion19546169
    nsv435700CNV Deletion17901297
    esv2718810CNV Deletion23290073
    esv8151CNV Loss19470904
    nsv428370CNV Loss18775914
    nsv912345CNV Loss21882294
    nsv470153CNV Loss18288195
    nsv912343CNV Loss21882294
    dgv429n27CNV Gain19166990

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 600398    OMIM disorders: --


    Find genes that share disorders with ZNF160           About GenesLikeMe


    Export disorders for ZNF160 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF160 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with ZNF160)
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    1. Isolation of cDNA clones for 42 different Kruppel-related zinc finger proteins expressed in the human monoblast cell line U-937. (PubMed id 7865130)1, 2, 3 Abrink M.... Hellman L. (DNA Cell Biol. 1995)
    2. Molecular cloning and preliminary functional analysis of two novel human KRAB zinc finger proteins, HKr18 and HKr19. (PubMed id 11410164)1, 2 Mark C.... Hellman L. (DNA Cell Biol. 2001)
    3. Characterization of long cDNA clones from human adult spleen. (PubMed id 11214971)1, 2 Hattori A.... Ohara O. (DNA Res. 2000)
    4. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)1, 2 Nagase T.... Ohara O. (DNA Res. 2000)
    5. A novel C2H2 zinc-finger protein gene (ZNF160) maps to human chromosome 19q13.3-q13.4. (PubMed id 7774943)1, 3 Halford S....Scambler P.J. (Genomics 1995)
    6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    7. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    8. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    9. Epigenetic regulation of TLR4 gene expression in intestinal epithelial cells for the maintenance of intestinal homeostasis. (PubMed id 19846881)1 Takahashi K....Kaminogawa S. (J. Immunol. 2009)
    10. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 90338 HGNC: 12948 AceView: ZNF160 Ensembl:ENSG00000170949 euGenes: HUgn90338
    ECgene: ZNF160 H-InvDB: ZNF160

    (According to HUGE)
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    HUGE: KIAA1611

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF160 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF160 gene:
    Search GeneIP for patents involving ZNF160

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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