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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF16 Gene

protein-coding   GIFtS: 49
GCID: GC08M146155

Zinc Finger Protein 16

(Previous name: zinc finger protein 16 (KOX 9))
  Search for ZNF16
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Protein 161 2
KOX92 3 5
Zinc Finger Protein KOX92 3
Zinc Finger Protein 16 (KOX 9)1
HZF12
Zinc Finger Protein Kruppel Type 92

External Ids:    HGNC: 129471   Entrez Gene: 75642   Ensembl: ENSG000001706317   OMIM: 6012625   UniProtKB: P170203   

Export aliases for ZNF16 gene to outside databases

Previous GC identifers: GC08M143762 GC08M146192 GC08M145603 GC08M146004 GC08M146006 GC08M146126 GC08M141271


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ZNF16 Gene:
The protein encoded by this gene contains multiple tandem zinc finger motifs. The encoded protein is involved in
the differentiation of erythroid and megakaryocytic cells. This gene is located in a cluster of related genes on
chromosome 8 encoding zinc finger proteins. Alternative splicing results in multiple transcript variants.
(provided by RefSeq, Sep 2012)

GeneCards Summary for ZNF16 Gene: 
ZNF16 (zinc finger protein 16) is a protein-coding gene. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZNF420.

UniProtKB/Swiss-Prot: ZNF16_HUMAN, P17020
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF16 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NT_037704.5  NC_018919.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF16 gene promoter:
         PPAR-gamma1   PPAR-gamma2   GATA-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF16 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZNF16

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24   Ensembl cytogenetic band:  8q24.3   HGNC cytogenetic band: 8q24

ZNF16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF16 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M146155:  view genomic region     (about GC identifiers)

Start:
146,155,744 bp from pter      End:
146,176,274 bp from pter
Size:
20,531 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZNF16_HUMAN, P17020 (See protein sequence)
Recommended Name: Zinc finger protein 16  
Size: 682 amino acids; 76472 Da
Subcellular location: Nucleus (Potential)
Secondary accessions: B3KXM4 D3DWP2 Q96FG0

Explore the universe of human proteins at neXtProt for ZNF16: NX_P17020

Explore proteomics data for ZNF16 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P17020

  • ZNF16 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZNF16 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001025147.2  NP_008889.2  

    ENSEMBL proteins: 
     ENSP00000276816   ENSP00000378369   ENSP00000434321   ENSP00000432755  

    Human Recombinant Protein Products for ZNF16: 
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    Novus Biologicals ZNF16 Lysates
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    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for ZNF16 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA16628192

    ZNF16 for ontologies           About GeneDecksing



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    Cloud-Clone Corp. CLIAs for ZNF16


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P17020

    ProtoNet protein and cluster: P17020

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZNF16_HUMAN, P17020
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 17 C2H2-type zinc fingers


    ZNF16 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZNF16_HUMAN, P17020
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZNF16:
    zinc finger protein 16 (KOX9) (C2H2 type,Kruppel-like)

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding IPI--
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZNF16 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZNF16:
     Decreased influenza A virus in  Increased gamma-H2AX phosphory 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF16

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    3 Interacting proteins for ZNF16 (P170201 ENSP000002768164) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    INCA1Q0VD861EBI-3921553,EBI-6509505
    CBX3ENSP000003366874STRING: ENSP00000336687
    GORABENSP000003567374STRING: ENSP00000356737
    About this table

    Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--
    GO:0007049cell cycle IEA--
    GO:0008284positive regulation of cell proliferation IDA--
    GO:0033674positive regulation of kinase activity IDA--

    ZNF16 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZNF16

    Search CenterWatch for drugs/clinical trials and news about ZNF16

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZNF16 gene (2 alternative transcripts): 
    NM_001029976.2  NM_006958.2  

    Unigene Cluster for ZNF16:

    Zinc finger protein 16
    Hs.493225  [show with all ESTs]
    Unigene Representative Sequence: DQ117529
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000276816(uc003zet.3 uc003zeu.3) ENST00000394909 ENST00000532351
    ENST00000532811 ENST00000527512 ENST00000527811 ENST00000527427 ENST00000529378

    miRNA
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    Products:
         
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    Additional mRNA sequence: 

    AF024700.1 AF244088.1 AK127625.1 AK226016.1 AL834451.1 BC010996.2 DQ117529.1 X52340.1 

    4 DOTS entries:

    DT.211312  DT.92327154  DT.121474754  DT.99933493 

    24/54 AceView cDNA sequences (see all 54):

    BG746647 BE741789 AF244088 NM_006958 AA865317 AK127625 BG283656 AA913738 
    BM470181 BC010996 AL834451 CR623646 CK824650 T17349 BP344973 BI222242 
    BG746406 BG117671 AI377536 AI338277 AI803692 AI972589 CD672680 X52340 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF16 (see all 6)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d · 5e
    SP1:              -                       -     -                                 
    SP2:              -     -     -           -     -                                 
    SP3:              -     -     -                 -                                 
    SP4:                    -     -           -     -                                 
    SP5:                          -           -     -                                 


    ECgene alternative splicing isoforms for ZNF16

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZNF16 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATAGAGTTT
    ZNF16 Expression
    About this image


    See ZNF16 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZNF16

    SOURCE GeneReport for Unigene cluster: Hs.493225
        SABiosciences Custom PCR Arrays for ZNF16
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZNF16 gene from 4/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ZSCAN26
    Uncharacterized protein
    49(a)
    1 → many
    1(60057410-60059657)
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 7)
    Uncharacterized protein
    (see all 7)
    57(a)
    55(a)
    (see all 7)
    many ↔ many
    many ↔ many
    (see all 7)
    GL343312.1(8265-9200)
    AAWZ02041495(3704-5129)
    zebrafish
    (Danio rerio)
    Actinopterygii CR792418.16
    BX842593.26
    (see all 11)
    Uncharacterized protein
    (see all 11)
    48(a)
    47(a)
    (see all 11)
    many ↔ many
    many ↔ many
    (see all 11)
    4(33542000-33543552)
    5(54699992-54700939)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG147113   -- 47(a)
    (best of 9)
      86E16   --
            Species with no ortholog for ZNF16

    ENSEMBL Gene Tree for ZNF16 (if available)
    TreeFam Gene Tree for ZNF16 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZNF16 gene
    ZNF4202  ZNF780A2  ZNF6652  ZNF724P2  ZNF72  ZNF232  ZNF4322  ZNF33A2  
    ZNF2342  ZNF302  ZNF5732  ZNF4292  ZNF5402  ZNF2512  ZNF6052  ZNF842  
    ZNF1892  ZNF5712  ZNF6302  ZNF932  ZNF2832  ZNF3472  ZNF4842  ZNF1352  
    ZNF1842  ZNF585B2  ZNF412  ZNF6152  ZNF5692  ZNF4702  
    18/506 SIMAP similar genes for ZNF16 using alignment to 4 protein entries:     ZNF16_HUMAN (see all proteins) (see all similar genes):
    DKFZp547L155    ZFP41    ZNF391    ZNF436    HZF36    ZNF146
    ZNF852    ZNF331    DKFZp666C237    GLI4    ZNF696    ZNF883
    DKFZp686H10254    DKFZp686L0787    ZNF662    ZNF75A    ZSCAN21    ZSCAN22

    ZNF16 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/683 SNPs in ZNF16 are shown (see all 683)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs126814291,2
    H--146155492(+) GGGGCC/TTAAGT 2 -- ds50014Minor allele frequency- T:0.00NS EA 420
    rs24719251,2
    C,H--146155589(-) TTCCAG/AAATTT 2 -- ds50015Minor allele frequency- A:0.00NS EA NA 528
    rs1408737791,2
    --146155723(+) ACAAAA/GAATTC 2 -- ds50010--------
    rs1172382661,2
    C,F--146155731(+) TTCACG/ACCACA 2 -- ds50011Minor allele frequency- A:0.03EA 120
    rs1910500301,2
    --146155747(+) CATTAA/CCAATC 2 -- ut310--------
    rs32071,2
    C,F--146155874(+) ACAAAT/CGTGCA 2 -- ut31 ese32Minor allele frequency- C:0.39MN NA 304
    rs1448341521,2
    --146155875(+) CAAACA/GTGCAG 2 -- ut310--------
    rs32081,2
    C,F--146155978(+) CAAAGA/GAGGGT 2 -- ut31 ese30--------
    rs1115580601,2
    C--146155996(+) TATGTA/GGCCAC 2 -- ut310--------
    rs1998425321,2
    --146156081(+) AGTTGA/GAGAGG 2 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF16 (146155744 - 146176274 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/13 variations for ZNF16 (see all 13):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2080072CNV Deletion18987734
    esv2669134CNV Deletion23128226
    esv2664252CNV Deletion23128226
    esv990431CNV Insertion20482838
    esv1592346CNV Insertion17803354
    esv1336384CNV Insertion17803354
    esv1750274CNV Insertion17803354
    nsv469809CNV Loss16826518
    nsv519737CNV Loss19592680
    dgv7986n71CNV Gain21882294

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZNF16 for disorders           About MalaCards
    OMIM gene information: 601262    OMIM disorders: --


    ZNF16 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZNF16

    Export disorders for ZNF16 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZNF16 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with ZNF16)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Multiple genes encoding zinc finger domains are expressed in human T cells. (PubMed id 2288909)1, 2 Thiesen H.-J. (1990)
    4. Identification of HZF1 as a novel target gene of the MEF2 transcription factor. (PubMed id 21468593)1 Liu X....Li X.Q. (2011)
    5. Toward an understanding of the protein interaction net work of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (2011)
    6. Zinc finger protein HZF1 promotes K562 cell prolifera tion by interacting with and inhibiting INCA1. (PubMed id 21874239)1 Li X.B....Zhang J.W. (2011)
    7. Identification of the trans-activation domain and the nuclear location signals of human zinc finger protein HZF1 (ZNF16). (PubMed id 19763908)1 Deng M.J....Zhang J.W. (2010)
    8. The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution as sociated with unique expression profiles in human tissues. (PubMed id 20346131)1 Lorenz P....Thiesen H.J. (2010)
    9. Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861)2 Choudhary C.... Mann M. (2009)
    10. Identification and characterization of a novel zinc finger protein (HZF1) gene and its function in erythroid and megakaryocytic differentiation of K562 cells. (PubMed id 16628192)1 Peng H....Zhang J.W. (2006)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7564 HGNC: 12947 AceView: ZNF16 Ensembl:ENSG00000170631 euGenes: HUgn7564
    ECgene: ZNF16 H-InvDB: ZNF16

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZNF16 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF16 gene:
    Search GeneIP for patents involving ZNF16

    GeneCards and IP:
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